Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 1.8e-182 642.5 335 100.0
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 3.1e-150 535.4 323 85.1
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 2.5e-147 525.8 331 82.8
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 3.7e-143 511.9 327 81.7
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 1.3e-135 486.9 333 75.4
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 2.4e-134 482.6 329 75.1
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 9.1e-134 480.7 334 75.1
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 2.3e-129 466.1 323 73.7
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 3.0e-129 465.7 323 73.7
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.3e-128 462.2 324 74.4
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.7e-128 461.5 324 74.7
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 9.7e-128 460.7 323 73.1
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 3.7e-127 458.8 299 77.3
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.5e-125 453.4 333 71.5
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 3.8e-124 448.7 326 72.7
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 5.0e-124 448.4 358 67.9
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 6.5e-124 448.0 323 71.8
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.4e-123 446.8 294 76.2
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.2e-123 445.7 304 73.0
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 5.5e-123 444.9 332 69.6
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 5.5e-123 444.9 323 70.9
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.2e-122 443.7 316 71.2
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.4e-121 440.3 324 70.1
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 3.9e-121 438.7 331 68.9
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 5.2e-121 438.3 299 74.6
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.7e-119 433.3 333 68.8
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 2.8e-119 432.6 317 71.9
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 3.7e-119 432.2 323 69.7
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 3.7e-119 432.2 307 69.7
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.3e-119 431.4 333 68.2
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.8e-118 429.9 328 69.5
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.4e-118 429.5 333 68.5
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 3.1e-118 429.1 336 67.9
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 2.0e-117 426.4 315 67.9
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 2.0e-117 426.4 328 69.2
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.5e-117 425.6 328 68.3
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 7.7e-117 424.5 316 68.0
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.7e-116 423.3 323 67.8
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 2.2e-116 422.9 322 68.6
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 1.1e-115 420.6 323 67.8
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 5.5e-115 418.3 320 65.9
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 7.2e-115 417.9 332 65.4
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.2e-114 417.2 335 66.3
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 1.6e-114 416.8 307 68.7
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.6e-114 416.8 296 69.6
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 4.7e-114 415.2 334 64.4
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 6.1e-114 414.8 324 67.0
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 8.0e-114 414.5 331 65.0
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 1.0e-113 414.1 323 67.2
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 2.3e-113 412.9 396 60.1
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 3.0e-113 412.5 332 66.9
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 4.0e-113 412.1 331 64.7
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 6.7e-113 411.4 322 66.8
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 8.8e-113 411.0 317 68.1
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 8.8e-113 411.0 322 66.8
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 8.8e-113 411.0 322 66.8
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 8.8e-113 411.0 335 65.7
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 1.2e-112 410.6 326 66.9
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.2e-112 410.6 344 64.8
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 1.5e-112 410.2 322 66.8
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.5e-112 410.2 311 69.1
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 3.3e-112 409.1 314 66.9
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.4e-112 408.7 322 66.5
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 5.7e-112 408.3 333 64.9
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 5.7e-112 408.3 337 63.8
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 9.7e-112 407.5 318 64.5
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 3.7e-111 405.6 331 65.3
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 3.7e-111 405.6 333 63.7
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 3.7e-111 405.6 323 65.0
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 8.2e-111 404.4 325 65.2
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.4e-110 403.7 335 63.0
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 3.1e-110 402.5 343 63.0
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 2.0e-109 399.8 308 66.6
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 2.0e-109 399.8 316 64.9
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.5e-109 399.1 290 69.3
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 4.5e-109 398.7 406 53.9
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 5.9e-109 398.3 327 63.0
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.0e-108 397.5 288 69.4
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.3e-108 397.1 322 65.5
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 2.9e-108 396.0 331 62.5
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.1e-107 394.0 336 61.9
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.5e-107 393.7 331 61.9
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 3.2e-107 392.5 322 63.0
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.2e-106 390.6 319 63.9
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 3.6e-106 389.0 315 64.4
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 8.0e-106 387.9 322 61.8
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 1.0e-105 387.5 292 65.8
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.0e-105 387.5 331 61.3
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 6.8e-105 384.8 294 64.6
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 8.8e-105 384.4 294 66.0
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 5.7e-104 381.7 319 63.3
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 9.8e-104 380.9 312 62.8
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 9.8e-104 380.9 312 62.8
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 2.8e-103 379.4 307 63.5
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 2.8e-103 379.4 314 63.4
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 3.7e-103 379.0 333 61.3
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 4.8e-103 378.6 329 61.1
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 8.3e-103 377.9 318 62.3
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 1.1e-102 377.5 312 62.8
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.1e-102 377.5 331 59.5
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.1e-102 377.5 313 62.0
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.1e-102 377.5 313 62.0
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 1.8e-102 376.7 307 63.2
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 5.4e-102 375.2 312 62.2
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 5.4e-102 375.2 307 63.2
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 5.4e-102 375.2 304 62.2
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.6e-101 373.6 307 62.9
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 1.6e-101 373.6 292 64.4
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.7e-101 372.9 328 58.2
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.3e-100 370.5 260 71.5
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.3e-100 370.5 375 55.5
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.7e-100 370.2 330 63.0
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 2.3e-100 369.8 301 62.1
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 3.8e-100 369.0 312 62.5
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 5.0e-100 368.6 325 60.0
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 5.0e-100 368.6 316 61.4
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 3.2e-99 365.9 299 64.5
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 1.6e-98 363.6 317 59.9
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 3.6e-98 362.5 307 62.2
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.6e-98 362.5 299 63.9
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 2.3e-97 359.8 288 62.2
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 6.8e-97 358.2 325 58.8
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 2.6e-96 356.3 316 60.1
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.1e-90 336.7 391 52.2
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 3.6e-90 335.9 350 54.6
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 1.8e-86 323.6 328 51.5
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 1.6e-85 320.5 315 56.2
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 5.2e-81 305.4 337 51.3
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 6.8e-81 305.1 322 53.1
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 8.3e-79 298.1 320 50.6
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.4e-78 297.4 321 52.0
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 7.0e-78 295.0 167 88.6
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 1.6e-77 293.9 314 53.8
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 2.0e-77 293.5 317 52.4
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 7.8e-77 291.6 292 55.1
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 3.3e-75 286.2 313 52.4
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.0e-72 276.9 252 56.3
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 1.3e-68 264.2 327 51.4
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 1.1e-67 261.2 306 50.3
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 5.6e-67 258.8 326 47.9
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 6.8e-65 251.9 269 53.2
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-62 244.2 223 60.5
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 4.1e-62 242.7 173 69.9
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 8.7e-60 235.0 258 54.3
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.2e-56 224.6 190 68.9
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 3.4e-56 223.0 239 55.2
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 2.1e-53 213.8 150 67.3
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.1e-49 199.9 135 75.6
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 2.1e-45 187.2 179 60.3
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.5e-43 181.0 310 39.0
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.5e-43 181.0 172 59.3
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 9.9e-40 168.3 141 66.0
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.2e-38 162.9 118 75.4
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 7.9e-29 132.1 348 32.2
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 3.0e-28 130.2 140 53.6
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.4e-25 121.3 310 31.6
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 6.5e-23 112.5 79 64.6
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-20 104.8 73 64.4
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 7.4e-19 99.0 99 56.6
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 2.0e-16 90.9 77 54.5
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 2.9e-15 87.0 61 73.8
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.8e-15 86.7 90 52.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 7.4e-11 72.4 43 74.4
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.0e-08 64.3 107 43.9
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.5e-08 63.2 38 84.2
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 5.0e-07 59.7 59 50.8
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 8.5e-07 58.9 52 55.8
Lsat_1_v5_gn_7_76440 Lactuca sativa HOM05D000009 ORTHO05D000008 1.1e-06 58.5 70 54.3
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 3.2e-06 57.0 100 42.0


User provided reference genes

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