Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.9e-96 355.9 189 100.0
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.2e-68 262.7 189 76.2
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 2.2e-68 262.7 193 76.2
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 3.5e-66 255.4 184 77.2
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 3.5e-66 255.4 188 76.6
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 4.6e-66 255.0 188 76.6
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.0e-65 253.8 180 79.4
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 5.0e-65 251.5 181 78.5
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 4.3e-64 248.4 189 73.5
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 5.6e-64 248.1 188 75.0
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 7.3e-64 247.7 187 73.3
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 9.5e-64 247.3 188 76.1
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 9.5e-64 247.3 194 71.6
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 9.5e-64 247.3 194 71.6
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 2.8e-63 245.7 189 74.6
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 2.8e-63 245.7 188 72.3
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 3.6e-63 245.4 189 72.5
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 4.7e-63 245.0 189 72.5
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.7e-63 245.0 189 72.5
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.7e-63 245.0 189 72.5
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 4.7e-63 245.0 189 73.0
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 4.7e-63 245.0 189 74.1
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.4e-62 243.4 184 73.9
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.8e-62 243.0 189 72.5
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 2.3e-62 242.7 184 73.9
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 4.0e-62 241.9 189 70.9
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 5.2e-62 241.5 188 67.6
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 5.2e-62 241.5 187 71.7
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 6.8e-62 241.1 178 73.6
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 8.9e-62 240.7 190 69.5
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 8.9e-62 240.7 189 69.8
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 8.9e-62 240.7 189 71.4
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 8.9e-62 240.7 180 73.3
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 8.9e-62 240.7 186 71.5
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.2e-61 240.4 178 71.9
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 1.5e-61 240.0 184 70.7
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 2.6e-61 239.2 189 69.3
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 3.4e-61 238.8 184 73.4
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.4e-61 238.8 180 72.8
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.4e-61 238.4 179 73.7
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.4e-61 238.4 188 70.7
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 4.4e-61 238.4 186 71.0
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 5.8e-61 238.0 188 69.7
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 7.5e-61 237.7 178 72.5
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 7.5e-61 237.7 184 72.8
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 7.5e-61 237.7 188 66.0
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 9.8e-61 237.3 189 69.8
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.3e-60 236.9 189 70.4
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.3e-60 236.9 184 74.5
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.7e-60 236.5 192 68.8
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 2.9e-60 235.7 192 69.3
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 4.9e-60 235.0 188 69.1
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 6.4e-60 234.6 184 73.4
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 6.4e-60 234.6 181 72.4
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 8.3e-60 234.2 149 83.2
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 8.3e-60 234.2 186 68.3
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 1.1e-59 233.8 160 78.8
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.1e-59 233.8 187 70.6
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.9e-59 233.0 182 70.3
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 2.4e-59 232.6 192 67.7
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 2.4e-59 232.6 184 72.3
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 4.1e-59 231.9 160 76.2
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 9.2e-59 230.7 154 78.6
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 9.2e-59 230.7 184 70.1
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.2e-58 230.3 188 65.4
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 1.6e-58 229.9 186 67.7
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.1e-58 229.6 180 71.1
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.1e-58 229.6 180 71.1
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 4.6e-58 228.4 186 68.8
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 4.6e-58 228.4 186 67.7
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 4.6e-58 228.4 186 67.7
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 4.6e-58 228.4 184 68.5
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 6.0e-58 228.0 204 66.2
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 7.8e-58 227.6 145 82.1
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.0e-57 227.3 193 65.8
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.3e-57 226.9 182 65.9
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 1.7e-57 226.5 145 81.4
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 2.3e-57 226.1 190 67.9
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 8.6e-57 224.2 192 64.1
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 8.6e-57 224.2 184 69.0
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.1e-56 223.8 171 74.3
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.5e-56 223.4 160 76.2
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.5e-56 222.6 143 81.1
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 2.5e-56 222.6 136 83.8
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 2.5e-56 222.6 190 66.3
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 3.3e-56 222.2 186 66.7
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 3.3e-56 222.2 187 67.9
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 3.3e-56 222.2 187 67.9
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 3.3e-56 222.2 187 67.9
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 3.3e-56 222.2 187 67.9
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 3.3e-56 222.2 141 81.6
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 3.3e-56 222.2 182 68.1
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 3.3e-56 222.2 186 69.4
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 4.3e-56 221.9 177 70.6
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 4.3e-56 221.9 186 66.7
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 4.3e-56 221.9 161 72.7
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 5.6e-56 221.5 171 71.3
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 5.6e-56 221.5 196 67.9
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 7.3e-56 221.1 143 81.1
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 7.3e-56 221.1 143 81.1
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 7.3e-56 221.1 154 74.7
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.6e-55 219.9 188 68.1
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.6e-55 219.9 188 68.1
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 1.6e-55 219.9 136 85.3
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 2.1e-55 219.5 179 68.7
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.8e-55 219.2 147 79.6
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 2.8e-55 219.2 149 77.2
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 4.7e-55 218.4 156 76.3
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 6.2e-55 218.0 127 85.0
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.1e-54 217.2 212 59.9
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 1.4e-54 216.9 129 86.8
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.8e-54 216.5 169 72.2
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 1.8e-54 216.5 225 59.1
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 2.3e-54 216.1 149 75.8
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 2.3e-54 216.1 174 67.2
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.3e-54 216.1 136 83.8
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 2.3e-54 216.1 172 68.6
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 3.1e-54 215.7 183 67.2
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 5.2e-54 214.9 126 85.7
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 6.8e-54 214.5 124 88.7
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 4.4e-53 211.8 125 88.0
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 3.5e-50 202.2 147 76.9
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 4.6e-50 201.8 139 77.0
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 7.8e-50 201.1 168 66.1
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 1.0e-49 200.7 152 72.4
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.7e-49 199.9 152 72.4
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 2.3e-49 199.5 152 72.4
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 3.0e-49 199.1 188 61.7
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 8.6e-49 197.6 189 61.4
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.1e-48 197.2 153 70.6
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.5e-48 196.8 135 73.3
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 4.3e-48 195.3 193 58.5
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 7.3e-48 194.5 135 73.3
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 1.6e-47 193.4 143 76.9
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 2.1e-47 193.0 148 73.6
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.6e-47 192.2 187 60.4
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.6e-47 192.2 135 72.6
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.4e-46 189.5 158 68.4
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-42 176.8 194 55.7
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 7.8e-42 174.5 189 57.1
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.7e-41 173.3 152 61.8
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 8.7e-41 171.0 147 64.6
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.9e-40 169.9 181 56.9
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.9e-40 169.9 185 54.1
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 3.3e-40 169.1 147 63.9
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.4e-38 163.7 124 66.1
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 2.4e-38 162.9 171 56.7
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 3.1e-38 162.5 125 64.8
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 9.9e-37 157.5 183 54.1
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.1e-35 154.1 127 60.6
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 3.2e-35 152.5 175 54.3
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 3.5e-34 149.1 138 62.3
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.1e-32 144.1 102 67.6
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.8e-31 139.4 105 62.9
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 2.8e-31 139.4 96 78.1
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 3.1e-30 136.0 77 89.6
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.2e-29 134.0 103 62.1
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.3e-28 130.6 147 53.7
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.6e-26 122.1 69 88.4
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.0e-25 120.9 115 62.6
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 7.4e-24 114.8 68 85.3
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.6e-23 113.6 134 51.5
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.8e-23 112.8 68 83.8
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 5.3e-22 108.6 122 56.6
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.7e-18 96.3 57 82.5
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 4.6e-18 95.5 54 85.2
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 1.8e-17 93.6 87 57.5
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.8e-17 93.6 58 81.0
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 3.9e-17 92.4 58 79.3
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 3.3e-16 89.4 124 41.9
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.3e-15 87.4 121 45.5
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.6e-15 87.0 47 87.2
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.1e-15 86.7 121 45.5
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 5.1e-09 65.5 63 55.6
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 8.7e-09 64.7 63 55.6
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.5e-08 63.9 120 40.8
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 5.7e-08 62.0 85 42.4
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 1.3e-07 60.8 63 52.4
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 1.8e-06 57.0 31 87.1


User provided reference genes

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