Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 0.0e+00 1088.9 561 100.0
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 9.6e-197 690.6 608 62.3
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 1.5e-178 630.2 611 60.6
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 9.1e-171 604.4 605 55.2
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 3.6e-167 592.4 625 54.4
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.3e-156 557.4 627 52.0
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.7e-156 557.0 627 51.8
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 1.0e-153 547.7 582 53.4
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 5.2e-150 535.4 576 52.6
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 3.5e-146 522.7 575 52.2
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 4.5e-146 522.3 561 51.9
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 1.9e-144 516.9 576 50.9
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 2.1e-143 513.5 573 51.7
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 2.8e-143 513.1 560 53.2
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 2.8e-143 513.1 637 49.5
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 8.0e-143 511.5 638 48.9
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 1.8e-142 510.4 612 48.7
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 4.0e-142 509.2 561 52.2
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 6.8e-142 508.4 603 50.2
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 2.6e-141 506.5 661 47.5
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 2.6e-141 506.5 531 54.0
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 4.9e-140 502.3 561 50.6
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 8.3e-140 501.5 628 47.8
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 1.1e-139 501.1 626 47.8
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 1.1e-139 501.1 556 51.3
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.6e-138 497.3 623 48.8
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 3.5e-138 496.1 571 50.8
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 7.8e-138 495.0 623 47.8
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 1.0e-137 494.6 633 48.2
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 3.0e-137 493.0 558 50.0
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 3.0e-137 493.0 566 50.9
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 8.6e-137 491.5 578 49.3
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 1.5e-136 490.7 611 47.6
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 4.3e-136 489.2 582 49.8
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.6e-135 486.1 560 50.4
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 1.0e-134 484.6 550 50.5
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 1.0e-134 484.6 626 47.4
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 1.4e-134 484.2 569 49.0
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 6.8e-134 481.9 561 48.7
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 8.9e-134 481.5 526 52.9
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 8.9e-134 481.5 626 47.8
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 1.5e-133 480.7 565 48.5
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 1.5e-133 480.7 571 49.0
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 9.8e-133 478.0 563 47.8
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 9.8e-133 478.0 599 47.1
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 1.3e-132 477.6 574 49.3
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 1.7e-132 477.2 587 47.7
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 3.7e-132 476.1 624 47.3
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 3.2e-131 473.0 525 50.5
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 4.1e-131 472.6 586 48.5
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 1.2e-130 471.1 571 48.5
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 2.7e-130 469.9 606 47.7
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 4.6e-130 469.2 566 47.7
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 1.3e-129 467.6 644 44.7
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 1.7e-129 467.2 527 49.9
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 3.0e-129 466.5 503 52.5
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 5.0e-129 465.7 592 48.1
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 8.6e-129 464.9 553 48.6
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 8.6e-129 464.9 557 49.4
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 8.6e-129 464.9 546 47.6
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 1.5e-128 464.2 566 48.9
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 1.5e-128 464.2 583 47.3
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 7.3e-128 461.8 578 48.1
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 9.5e-128 461.5 590 46.1
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 2.1e-127 460.3 569 47.8
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 2.8e-127 459.9 581 47.8
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 1.1e-126 458.0 561 48.1
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 1.1e-126 458.0 562 47.7
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 1.1e-126 458.0 521 49.5
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 1.4e-126 457.6 567 47.4
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 6.8e-126 455.3 569 47.5
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 2.0e-125 453.8 551 47.5
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 4.4e-125 452.6 561 48.3
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 5.8e-125 452.2 564 46.8
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 6.4e-124 448.7 555 48.6
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 5.4e-123 445.7 505 48.5
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 7.8e-122 441.8 627 44.3
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 7.8e-122 441.8 563 46.9
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 6.6e-121 438.7 554 47.7
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 2.5e-120 436.8 571 46.1
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 5.6e-120 435.6 555 47.7
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 4.7e-119 432.6 626 44.9
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 8.1e-119 431.8 585 46.0
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 4.4e-117 426.0 629 42.6
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 9.9e-117 424.9 542 47.4
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 1.7e-116 424.1 462 52.4
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 2.2e-116 423.7 622 43.2
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 6.4e-116 422.2 581 44.1
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 2.3e-113 413.7 489 48.3
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 4.7e-111 406.0 569 44.8
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 1.8e-110 404.1 511 45.2
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 2.0e-109 400.6 573 43.3
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 2.9e-108 396.7 559 43.5
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 6.6e-105 385.6 424 50.9
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 1.9e-104 384.0 588 41.8
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 6.7e-97 359.0 403 46.7
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 4.3e-96 356.3 529 43.7
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 2.2e-71 274.2 487 35.5
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 2.2e-71 274.2 450 40.7
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 5.0e-68 263.1 502 35.7
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 4.2e-67 260.0 540 34.6
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 4.2e-67 260.0 455 36.9
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.0e-49 200.7 193 56.5
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 8.8e-49 199.1 189 59.8
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 3.1e-46 190.7 271 45.0
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 4.1e-46 190.3 319 38.9
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 2.7e-29 134.4 535 26.2
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 4.6e-21 107.1 467 25.5
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 9.5e-19 99.4 354 27.1
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.2e-17 93.6 109 49.5
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.2e-17 93.6 109 49.5
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 8.9e-17 92.8 109 49.5
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 8.9e-17 92.8 109 49.5
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 1.2e-16 92.4 213 37.6
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 8.6e-12 76.3 372 23.7
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 1.1e-11 75.9 298 25.8
Nitab4.5_0003551g0050 Nicotiana tabacum HOM05D004977 ORTHO05D006454 7.3e-11 73.2 318 23.3
Nitab4.5_0002611g0110 Nicotiana tabacum HOM05D004977 ORTHO05D006454 1.6e-10 72.0 324 22.2
Solyc07g005880.3 Solanum lycopersicum HOM05D004977 ORTHO05D006454 1.6e-10 72.0 318 23.6
Sopen07g001990 Solanum pennellii HOM05D004977 ORTHO05D006454 1.6e-10 72.0 318 23.6
CAN.G160.14 Capsicum annuum HOM05D004977 ORTHO05D006454 2.1e-10 71.6 308 23.7
HPP92_002246 Vanilla planifolia HOM05D004977 ORTHO05D006454 4.7e-10 70.5 307 24.1
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 8.1e-10 69.7 116 35.3
MCO13G571 Micromonas commoda HOM05D001470 ORTHO05D006756 2.3e-09 68.2 247 23.1
Peaxi162Scf00401g00211 Petunia axillaris HOM05D004977 ORTHO05D006454 5.2e-09 67.0 330 20.6
TAR628G0775 Trochodendron aralioides HOM05D001470 ORTHO05D006756 5.2e-09 67.0 235 24.3
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 6.8e-09 66.6 330 24.8
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 8.9e-09 66.2 334 24.6
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 8.9e-09 66.2 329 24.9
SEGI_11240 Sequoiadendron giganteum HOM05D001470 ORTHO05D006756 1.5e-08 65.5 235 25.5
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 2.0e-08 65.1 302 24.8
EL10Ac1g01041 Beta vulgaris HOM05D001470 ORTHO05D006756 2.0e-08 65.1 235 23.0
CDE05G0645 Ceratophyllum demersum HOM05D004977 ORTHO05D006454 2.0e-08 65.1 307 21.5
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 2.0e-08 65.1 69 58.0
Phvul.011G100500 Phaseolus vulgaris HOM05D004977 ORTHO05D006454 2.0e-08 65.1 312 22.1
Sc07g0004500 Simmondsia chinensis HOM05D001470 ORTHO05D006756 2.0e-08 65.1 249 24.5
GSVIVG01008841001 Vitis vinifera HOM05D001470 ORTHO05D006756 2.6e-08 64.7 235 24.3
Cfa018570 Carpinus fangiana HOM05D001470 ORTHO05D006756 3.4e-08 64.3 236 24.2
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 3.4e-08 64.3 70 52.9
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 3.4e-08 64.3 323 22.9
Lsat_1_v5_gn_3_34541 Lactuca sativa HOM05D001470 ORTHO05D006756 4.4e-08 63.9 236 23.3
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 5.8e-08 63.5 269 24.5
Nn5g28359 Nelumbo nucifera HOM05D001470 ORTHO05D006756 5.8e-08 63.5 235 23.4
SMO329G0082 Selaginella moellendorffii HOM05D001470 ORTHO05D006756 5.8e-08 63.5 226 24.8
ATR0709G002 Amborella trichopoda HOM05D001470 ORTHO05D006756 7.5e-08 63.2 237 23.6
Pp3c22_21030 Physcomitrium patens HOM05D004977 ORTHO05D006454 9.9e-08 62.8 304 23.4
SGA_v2.0_scaffold7G04011 Striga asiatica HOM05D004977 ORTHO05D006454 9.9e-08 62.8 313 22.7
unitig_699.g19732 Utricularia gibba HOM05D004977 ORTHO05D006454 9.9e-08 62.8 351 22.2
Aqoxy6G00254 Aquilegia oxysepala HOM05D001470 ORTHO05D006756 1.3e-07 62.4 243 22.6
CBR_g49986 Chara braunii HOM05D001470 ORTHO05D006430 1.3e-07 62.4 233 25.8
MBI06_g04545_MAGBIO Magnolia biondii HOM05D001470 ORTHO05D006756 1.3e-07 62.4 226 23.5
Os02g0775200 Oryza sativa ssp. japonica HOM05D001470 ORTHO05D006756 1.3e-07 62.4 240 24.6
TAR633G0771 Trochodendron aralioides HOM05D004977 ORTHO05D006454 1.3e-07 62.4 307 21.8
Cc10_g12180 Coffea canephora HOM05D001470 ORTHO05D006756 1.7e-07 62.0 233 24.0
Gohir.D05G238900 Gossypium hirsutum HOM05D001470 ORTHO05D006756 1.7e-07 62.0 307 23.1
Gorai.009G247600 Gossypium raimondii HOM05D001470 ORTHO05D006756 1.7e-07 62.0 307 23.1
Oeu037225.1 Olea europaea HOM05D001470 ORTHO05D006756 1.7e-07 62.0 235 24.3
CSS0043529 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 2.2e-07 61.6 250 22.4
Mapoly0014s0096 Marchantia polymorpha HOM05D001470 ORTHO05D006430 2.9e-07 61.2 237 24.5
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 2.9e-07 61.2 269 25.3
AagrBONN_evm.TU.Sc2ySwM_344.153 Anthoceros agrestis HOM05D001470 ORTHO05D006756 3.7e-07 60.8 240 23.3
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 3.7e-07 60.8 290 22.8
Lj1g0008455 Lotus japonicus HOM05D001470 ORTHO05D006756 3.7e-07 60.8 235 23.0
Atru.chr13.1511 Acer truncatum HOM05D001470 ORTHO05D006756 4.9e-07 60.5 238 23.5
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 4.9e-07 60.5 272 24.3
MCO16G356 Micromonas commoda HOM05D004977 ORTHO05D006454 4.9e-07 60.5 305 25.6
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 6.4e-07 60.1 259 24.3
PSO170G0410 Papaver somniferum HOM05D001470 ORTHO05D006756 8.3e-07 59.7 227 23.3
CANSAT25G1662 Cannabis sativa HOM05D001470 ORTHO05D006756 1.1e-06 59.3 236 23.3
Lj2C831G4 Lonicera japonica HOM05D004977 ORTHO05D006454 1.1e-06 59.3 320 22.2
SGA_v2.0_scaffold52G18953 Striga asiatica HOM05D001470 ORTHO05D006756 1.1e-06 59.3 232 22.8
Actinidia04910 Actinidia chinensis HOM05D004977 ORTHO05D006454 2.4e-06 58.2 306 22.5
Eucgr.F04342 Eucalyptus grandis HOM05D001470 ORTHO05D006756 2.4e-06 58.2 246 24.0
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 3.2e-06 57.8 303 23.1
Pp3c13_4510 Physcomitrium patens HOM05D001470 ORTHO05D006756 3.2e-06 57.8 226 23.0
SGA_v2.0_scaffold24G10439 Striga asiatica HOM05D001470 ORTHO05D006756 5.4e-06 57.0 244 22.1
Ah.05g170940 Amaranthus hybridus HOM05D001470 ORTHO05D006756 7.1e-06 56.6 235 22.1
C02p34910 Brassica napus HOM05D004094 ORTHO05D004601 7.1e-06 56.6 212 26.4
Zm00001eb114240 Zea mays HOM05D004977 ORTHO05D006454 7.1e-06 56.6 273 21.6
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 9.2e-06 56.2 308 22.7
VMungo0647G1825 Vigna mungo HOM05D004094 ORTHO05D004601 9.2e-06 56.2 267 23.2


User provided reference genes

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