Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 0.0e+00 1084.3 612 100.0
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 1.8e-217 759.6 622 75.6
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 2.9e-215 752.3 628 75.8
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 2.9e-210 735.7 559 78.9
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 3.9e-191 672.2 630 67.5
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 1.6e-181 640.2 535 71.6
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.3e-178 630.6 638 66.0
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.1e-177 627.5 633 62.7
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 5.1e-175 618.6 645 62.2
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 9.0e-172 607.8 631 63.5
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 1.7e-170 603.6 632 60.9
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 1.2e-168 597.4 630 62.4
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 7.9e-168 594.7 637 61.1
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 1.0e-167 594.3 634 64.8
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.7e-167 591.7 637 61.1
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.7e-167 591.7 637 60.9
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.5e-166 590.5 629 60.4
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 2.5e-166 589.7 649 59.9
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 3.3e-166 589.3 635 61.1
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 1.6e-165 587.0 635 60.5
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 8.1e-165 584.7 626 58.8
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 1.1e-164 584.3 634 59.9
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 1.1e-164 584.3 631 59.6
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.2e-163 580.9 624 58.0
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 4.5e-163 578.9 557 63.6
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 7.6e-163 578.2 629 59.0
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 9.9e-163 577.8 638 59.7
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.6e-160 570.5 630 57.5
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 2.1e-160 570.1 634 58.5
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 4.6e-160 568.9 688 54.8
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 8.7e-159 564.7 546 63.6
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 2.5e-158 563.1 543 62.8
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.1e-157 560.1 628 59.9
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.8e-156 557.0 518 64.3
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.8e-156 557.0 649 57.8
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 3.1e-156 556.2 627 57.4
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 3.1e-156 556.2 634 58.7
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 4.0e-156 555.8 394 78.4
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 4.2e-153 545.8 627 57.9
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 5.5e-153 545.4 502 64.7
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 6.0e-152 542.0 547 62.9
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 8.2e-149 531.6 538 62.6
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 2.4e-148 530.0 603 58.4
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 2.4e-148 530.0 522 61.9
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 4.1e-148 529.3 624 57.9
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 3.4e-147 526.2 579 59.9
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 3.4e-147 526.2 642 55.8
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 4.5e-147 525.8 547 61.6
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 5.9e-147 525.4 532 62.4
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 1.3e-146 524.2 629 56.6
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 8.5e-146 521.5 433 70.0
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 3.2e-145 519.6 517 63.6
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 4.2e-145 519.2 438 69.4
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 7.2e-145 518.5 563 60.9
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 1.2e-144 517.7 685 53.4
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 2.1e-144 516.9 629 56.3
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 2.7e-144 516.5 472 66.3
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 6.1e-144 515.4 469 65.5
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 1.0e-143 514.6 659 56.3
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.3e-143 514.2 630 56.2
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.3e-143 514.2 654 55.8
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 3.9e-143 512.7 447 68.2
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 8.7e-143 511.5 438 68.9
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 2.2e-141 506.9 556 59.0
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.8e-141 506.5 558 59.9
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 1.8e-140 503.8 636 56.4
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 2.4e-140 503.4 441 67.3
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 5.3e-140 502.3 656 53.2
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 9.1e-140 501.5 413 70.2
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 7.7e-139 498.4 627 54.7
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 1.9e-137 493.8 551 60.1
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 3.2e-137 493.0 556 58.3
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 2.1e-136 490.3 555 58.6
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 3.6e-136 489.6 634 54.4
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 3.0e-135 486.5 505 61.6
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 5.1e-135 485.7 523 59.5
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 1.1e-134 484.6 502 61.2
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 2.8e-133 479.9 547 58.1
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 3.1e-132 476.5 666 51.1
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 6.9e-132 475.3 630 53.2
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.9e-130 469.9 481 63.4
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 8.5e-130 468.4 575 55.0
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 1.6e-128 464.2 427 65.1
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 2.7e-128 463.4 419 65.4
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 6.1e-128 462.2 553 55.9
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 2.2e-125 453.8 555 55.3
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 1.4e-124 451.1 550 52.7
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.8e-124 450.7 531 54.2
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 4.1e-124 449.5 526 57.4
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 1.2e-123 448.0 557 52.2
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 2.6e-118 430.3 530 52.6
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 3.3e-118 429.9 545 53.4
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 5.7e-118 429.1 531 52.9
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 5.7e-118 429.1 531 52.9
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 3.7e-117 426.4 355 66.5
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.2e-115 421.4 640 49.8
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 1.6e-115 421.0 641 49.3
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.0e-115 420.6 496 55.4
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 1.0e-114 418.3 543 51.7
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 1.7e-114 417.5 593 49.2
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 1.1e-113 414.8 537 51.6
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.9e-113 414.1 531 53.9
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 9.4e-113 411.8 370 66.8
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 1.8e-111 407.5 566 51.8
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 2.8e-109 400.2 533 53.5
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 7.2e-105 385.6 544 48.5
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 2.1e-104 384.0 642 47.4
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.3e-101 374.8 526 49.4
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 5.6e-97 359.4 506 49.4
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-96 358.2 370 59.5
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-96 358.2 370 59.5
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.8e-96 357.1 370 59.5
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.8e-95 354.4 370 58.9
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 4.1e-92 343.2 311 66.6
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.0e-90 338.6 370 55.1
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 3.4e-86 323.6 369 52.3
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 6.0e-83 312.8 451 51.7
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 7.8e-83 312.4 353 51.3
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 1.3e-82 311.6 348 52.6
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 2.3e-82 310.8 340 54.1
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 1.2e-67 261.9 385 44.7
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 9.0e-63 245.7 471 42.9
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 2.0e-62 244.6 386 43.5
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 4.9e-61 240.0 535 39.4
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.4e-54 217.2 564 37.9
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 2.2e-53 214.5 336 42.9
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 2.1e-51 208.0 255 49.8
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 4.5e-46 190.3 267 53.6
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 2.7e-43 181.0 213 54.0
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 7.9e-43 179.5 105 86.7
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.5e-41 175.3 268 45.5
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.3e-40 172.2 202 52.0
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.8e-40 171.0 135 74.1
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.1e-25 122.5 274 36.5
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 3.1e-23 114.4 352 30.7
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 5.5e-20 103.6 234 31.6
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 1.0e-18 99.4 152 48.0
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.0e-17 95.1 484 28.9
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 7.0e-15 86.7 87 51.7
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.2e-14 85.9 53 77.4
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 4.5e-14 84.0 136 47.1
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 1.0e-13 82.8 62 71.0
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 9.7e-09 66.2 146 39.7
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 1.2e-06 59.3 39 74.4


User provided reference genes

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