Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 9.0e-102 373.6 194 100.0
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 8.8e-81 303.9 194 83.5
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.2e-79 299.3 194 82.5
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.2e-77 293.5 194 79.4
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.2e-77 293.5 194 79.4
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 2.2e-76 289.3 186 80.6
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 2.9e-76 288.9 194 78.9
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.9e-76 288.9 193 78.2
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.2e-74 283.5 184 79.9
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.6e-74 283.1 197 76.1
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.6e-74 283.1 194 77.8
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 2.1e-74 282.7 195 78.5
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 3.6e-74 282.0 194 78.4
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 3.6e-74 282.0 194 76.8
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 4.7e-74 281.6 194 76.3
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 6.1e-74 281.2 194 77.8
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 6.1e-74 281.2 194 76.8
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.4e-73 280.0 193 76.2
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.3e-73 279.3 194 77.8
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.3e-73 279.3 194 76.8
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 2.3e-73 279.3 188 77.7
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 6.7e-73 277.7 194 76.3
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.1e-72 276.9 194 76.3
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.1e-72 276.9 185 81.1
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.5e-72 276.6 194 75.8
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 2.0e-72 276.2 184 78.3
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 2.0e-72 276.2 195 76.9
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 2.6e-72 275.8 194 76.3
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.6e-72 275.8 194 76.3
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.6e-72 275.8 194 76.3
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 5.7e-72 274.6 196 77.0
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 2.2e-71 272.7 194 76.3
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 8.2e-71 270.8 182 78.6
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 8.2e-71 270.8 195 75.4
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.1e-70 270.4 194 75.3
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 2.4e-70 269.2 197 75.1
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.4e-70 269.2 195 75.4
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 2.4e-70 269.2 184 77.2
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 2.4e-70 269.2 184 76.1
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.1e-70 268.9 194 74.7
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 4.1e-70 268.5 194 75.8
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 5.3e-70 268.1 194 74.2
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 7.0e-70 267.7 195 76.4
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 7.0e-70 267.7 194 74.7
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 9.1e-70 267.3 183 76.0
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.6e-69 266.5 194 74.2
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 5.9e-69 264.6 177 79.1
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.9e-69 264.6 182 78.6
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 5.9e-69 264.6 182 78.0
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 7.7e-69 264.2 194 73.7
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 7.7e-69 264.2 195 74.9
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 1.0e-68 263.8 184 73.9
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 1.3e-68 263.5 182 79.1
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.2e-68 262.7 182 78.0
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 2.2e-68 262.7 184 76.1
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.9e-68 262.3 184 74.5
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 5.0e-68 261.5 185 77.8
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 8.5e-68 260.8 195 75.4
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 1.1e-67 260.4 195 73.8
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 1.1e-67 260.4 187 75.4
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.1e-67 260.4 184 75.0
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.5e-67 259.2 188 76.6
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 2.5e-67 259.2 183 74.9
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.5e-67 259.2 194 73.2
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 5.5e-67 258.1 185 74.6
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 5.5e-67 258.1 184 75.5
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 7.2e-67 257.7 189 72.5
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 7.2e-67 257.7 189 75.7
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 9.4e-67 257.3 186 75.8
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 9.4e-67 257.3 198 70.7
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 3.6e-66 255.4 189 74.6
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 8.0e-66 254.2 210 67.1
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 8.0e-66 254.2 187 73.8
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 8.0e-66 254.2 186 74.2
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 5.2e-65 251.5 194 71.6
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 8.8e-65 250.8 211 65.9
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 8.8e-65 250.8 184 73.9
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 8.8e-65 250.8 183 74.3
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 8.8e-65 250.8 191 73.3
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 2.0e-64 249.6 186 73.1
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 2.0e-64 249.6 184 71.7
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.0e-64 249.6 194 69.6
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 4.4e-64 248.4 162 81.5
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 5.7e-64 248.1 183 72.1
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 5.7e-64 248.1 183 72.7
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 7.5e-64 247.7 175 76.0
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 7.5e-64 247.7 191 71.2
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-63 246.9 188 75.0
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-63 246.9 188 75.0
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 2.2e-63 246.1 186 73.1
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 3.7e-63 245.4 186 73.1
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 4.8e-63 245.0 187 74.3
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 4.8e-63 245.0 187 74.3
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 4.8e-63 245.0 187 74.3
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 4.8e-63 245.0 187 74.3
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 4.8e-63 245.0 186 72.6
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 6.3e-63 244.6 224 62.9
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 8.3e-63 244.2 191 72.3
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.4e-62 243.4 191 69.6
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.8e-62 243.0 158 84.2
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.3e-60 236.9 200 65.5
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.7e-60 236.5 193 70.5
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 1.7e-60 236.5 186 68.8
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 2.2e-60 236.1 172 73.8
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 2.9e-60 235.7 194 70.1
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.9e-59 233.0 143 84.6
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 3.2e-59 232.3 206 63.1
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 4.2e-59 231.9 222 60.8
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-58 230.3 143 83.2
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-58 230.3 143 83.9
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 1.2e-58 230.3 143 83.2
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.2e-58 230.3 146 80.8
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 3.6e-58 228.8 202 64.4
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 3.6e-58 228.8 140 85.0
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 8.0e-58 227.6 146 82.9
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 8.0e-58 227.6 142 83.1
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 4.4e-56 221.9 196 67.3
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.7e-55 219.9 125 88.0
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.2e-55 219.5 163 73.0
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 3.7e-55 218.8 126 88.1
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 1.1e-54 217.2 125 89.6
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.4e-54 216.9 194 62.4
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 1.4e-54 216.9 125 89.6
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 2.4e-54 216.1 195 63.1
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 3.1e-54 215.7 193 63.7
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 5.4e-54 214.9 124 88.7
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.3e-52 209.5 196 62.2
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.1e-51 207.2 198 63.1
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 4.3e-51 205.3 185 63.8
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 5.6e-51 204.9 132 79.5
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.1e-50 203.0 147 77.6
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 4.7e-50 201.8 179 62.6
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.0e-49 200.7 124 81.5
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.8e-49 199.9 179 63.1
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 8.9e-49 197.6 152 72.4
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-48 196.8 152 72.4
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.5e-48 196.8 176 62.5
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 2.0e-48 196.4 152 72.4
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 3.4e-48 195.7 177 64.4
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 5.7e-48 194.9 151 70.2
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 5.7e-48 194.9 150 70.7
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 3.5e-45 185.7 136 71.3
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-42 176.8 199 55.3
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.7e-42 175.3 186 55.4
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.3e-41 172.9 159 59.7
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 6.4e-39 164.9 124 66.1
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 8.3e-39 164.5 157 58.0
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.9e-38 163.3 125 66.4
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 4.1e-38 162.2 187 53.5
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.7e-36 156.8 134 62.7
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 3.9e-36 155.6 127 61.4
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 3.9e-36 155.6 159 56.6
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 3.3e-35 152.5 128 63.3
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.8e-33 146.7 96 81.2
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.0e-33 145.6 102 69.6
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.0e-33 145.6 113 69.0
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.6e-32 142.9 162 48.8
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 4.9e-31 138.7 130 63.8
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 5.4e-30 135.2 77 88.3
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 2.1e-29 133.3 152 54.6
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 6.0e-29 131.7 103 62.1
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.6e-26 122.5 69 88.4
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 5.8e-24 115.2 68 85.3
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.2e-23 113.2 68 83.8
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 1.1e-17 94.4 87 59.8
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.8e-17 93.6 57 80.7
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.1e-17 92.8 54 83.3
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 5.2e-17 92.0 85 62.4
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-16 90.9 105 54.3
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.0e-16 90.1 105 54.3
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 2.6e-16 89.7 58 77.6
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 9.9e-16 87.8 47 87.2
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 4.9e-15 85.5 124 39.5
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 5.1e-12 75.5 89 51.7
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 2.6e-08 63.2 56 57.1
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 4.5e-08 62.4 56 57.1
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 5.8e-08 62.0 50 66.0
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 9.9e-08 61.2 86 41.9
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 6.4e-07 58.5 56 53.6
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 1.1e-06 57.8 31 87.1


User provided reference genes

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