Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 2.7e-124 448.7 239 100.0
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.8e-107 392.9 244 86.9
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 5.3e-104 381.3 241 84.6
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 9.7e-98 360.5 239 78.7
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 4.0e-91 338.6 237 74.7
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.5e-90 334.3 240 72.9
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.3e-89 331.3 240 72.5
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 7.0e-88 327.8 240 72.1
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 9.1e-88 327.4 240 70.8
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.2e-87 327.0 240 70.0
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 4.5e-87 325.1 240 72.5
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 5.9e-87 324.7 240 71.2
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 5.9e-87 324.7 239 71.5
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 7.7e-87 324.3 240 71.7
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.0e-86 323.9 240 70.8
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.0e-86 323.9 250 70.8
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 1.3e-86 323.6 240 71.7
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.3e-86 323.6 240 71.7
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.7e-86 323.2 240 72.5
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 2.3e-86 322.8 240 72.1
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 6.5e-86 321.2 241 71.4
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.5e-85 320.1 239 71.1
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.9e-85 319.7 240 70.4
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.5e-85 319.3 240 71.7
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 3.3e-85 318.9 240 70.8
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 4.2e-85 318.5 240 70.8
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 5.5e-85 318.2 240 71.7
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 7.2e-85 317.8 240 70.4
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 9.5e-85 317.4 204 80.4
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 9.5e-85 317.4 240 70.8
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.2e-84 317.0 239 71.1
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.6e-84 316.6 240 70.8
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.1e-84 316.2 244 68.9
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 2.8e-84 315.8 240 70.8
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 3.6e-84 315.5 225 74.2
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 3.6e-84 315.5 242 69.0
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 4.7e-84 315.1 241 69.3
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 4.7e-84 315.1 241 69.3
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.4e-83 313.5 239 69.9
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 2.3e-83 312.8 240 70.4
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 3.0e-83 312.4 240 69.6
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.0e-83 312.4 241 69.3
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 4.0e-83 312.0 240 69.2
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 5.2e-83 311.6 240 68.3
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.5e-82 310.1 225 73.3
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 2.0e-82 309.7 206 76.7
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.0e-82 309.7 239 69.0
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.0e-82 309.7 241 69.7
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 2.0e-82 309.7 239 69.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.6e-82 309.3 240 68.8
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 3.4e-82 308.9 206 78.6
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 4.4e-82 308.5 240 69.2
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 7.5e-82 307.8 239 70.7
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 9.8e-82 307.4 239 68.6
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 2.2e-81 306.2 239 68.6
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 2.2e-81 306.2 240 69.2
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.2e-81 306.2 240 69.2
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 2.8e-81 305.8 240 68.3
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 2.8e-81 305.8 239 67.4
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 4.9e-81 305.1 207 77.3
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.3e-81 304.7 240 68.8
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.3e-81 304.3 240 68.8
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.4e-80 302.8 238 66.8
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 4.1e-80 302.0 239 68.6
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 5.4e-80 301.6 240 68.3
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 5.4e-80 301.6 240 68.3
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 5.4e-80 301.6 205 76.6
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 7.0e-80 301.2 240 67.9
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 9.2e-80 300.8 240 68.3
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.6e-79 300.1 240 67.1
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 2.7e-79 299.3 240 65.8
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 2.7e-79 299.3 236 68.6
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 4.5e-79 298.5 239 67.8
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 5.9e-79 298.1 238 66.0
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 5.9e-79 298.1 238 67.2
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 7.8e-79 297.7 239 67.4
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.3e-78 297.0 197 78.7
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.3e-78 296.2 240 66.2
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.9e-78 295.8 233 68.2
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 5.0e-78 295.0 239 66.9
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 8.6e-78 294.3 198 77.3
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.1e-77 293.9 239 66.1
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.5e-77 293.5 238 66.4
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.5e-77 293.5 238 65.5
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.9e-77 293.1 241 65.6
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.5e-77 292.7 237 67.9
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 3.3e-77 292.4 240 65.4
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 5.6e-77 291.6 239 66.1
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 7.3e-77 291.2 229 65.1
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.2e-76 290.4 237 67.1
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.6e-76 290.0 240 65.0
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.1e-76 289.7 229 65.1
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.1e-76 289.7 204 73.0
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 2.8e-76 289.3 242 64.9
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.6e-76 288.9 224 66.5
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 4.7e-76 288.5 240 64.6
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 4.7e-76 288.5 239 64.4
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 6.1e-76 288.1 229 65.1
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 6.1e-76 288.1 238 64.3
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.0e-75 287.3 203 73.4
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.3e-75 286.2 229 63.8
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.3e-75 286.2 229 64.6
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 4.0e-75 285.4 229 64.2
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 6.8e-75 284.6 206 73.8
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 2.6e-74 282.7 215 71.2
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 3.4e-74 282.3 196 76.5
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 3.4e-74 282.3 197 72.6
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 9.8e-74 280.8 203 70.4
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 2.2e-73 279.6 240 64.6
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.2e-73 279.6 194 75.3
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 4.9e-73 278.5 240 63.8
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 1.8e-72 276.6 204 72.1
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 2.4e-72 276.2 229 62.4
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 2.4e-72 276.2 229 62.4
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.4e-72 276.2 241 63.1
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 4.1e-72 275.4 206 68.4
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 2.0e-71 273.1 229 62.4
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 2.0e-71 273.1 229 62.4
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.3e-70 270.4 208 68.3
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 2.8e-68 262.7 224 61.6
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 6.2e-68 261.5 209 64.1
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 1.1e-67 260.8 194 71.6
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.2e-66 257.3 180 72.8
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.7e-65 252.3 175 72.6
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 3.9e-62 242.3 228 57.0
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 4.3e-53 212.2 214 58.4
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 5.6e-53 211.8 188 61.7
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 7.3e-53 211.5 158 68.4
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 7.3e-53 211.5 232 54.3
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 3.4e-50 202.6 170 65.9
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 6.9e-43 178.3 130 70.0
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 1.3e-38 164.1 109 71.6
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 2.3e-38 163.3 239 46.4
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 5.1e-38 162.2 176 52.3
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 7.3e-37 158.3 173 52.0
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 5.1e-30 135.6 102 63.7
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 7.4e-29 131.7 121 59.5
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 9.6e-29 131.3 188 42.0
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 8.4e-25 118.2 86 64.0
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.4e-19 100.9 90 64.4
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 7.6e-18 95.1 89 61.8
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 5.5e-16 89.0 197 31.5
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 2.4e-11 73.6 189 28.6
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 3.1e-11 73.2 51 72.5
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 2.5e-08 63.5 79 53.2
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.5e-08 63.5 62 59.7
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 6.1e-07 58.9 54 63.0
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.0e-06 58.2 82 46.3


User provided reference genes

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