Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 0.0e+00 1125.2 584 100.0
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 2.8e-199 699.1 536 65.7
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 5.7e-168 595.1 521 58.5
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.3e-148 530.8 534 51.3
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.3e-148 530.8 538 51.1
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.3e-147 525.8 523 51.1
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.4e-145 520.8 536 51.9
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 2.6e-144 516.5 524 50.2
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 2.3e-140 503.4 584 47.6
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 1.5e-136 490.7 543 47.9
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 3.2e-134 483.0 542 48.0
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.6e-133 480.7 523 48.6
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 6.0e-133 478.8 549 47.4
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.1e-131 474.6 549 46.8
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 1.5e-131 474.2 528 48.9
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.5e-131 474.2 527 48.4
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 4.8e-130 469.2 525 48.6
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 5.8e-128 462.2 529 48.0
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.3e-127 461.1 522 46.7
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 2.9e-127 459.9 547 46.4
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 4.9e-127 459.1 535 45.6
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 2.4e-126 456.8 524 45.6
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 4.2e-126 456.1 521 45.3
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 5.4e-126 455.7 522 45.6
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 7.9e-125 451.8 527 46.1
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.0e-124 451.4 531 44.8
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 3.9e-124 449.5 522 43.9
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 1.5e-123 447.6 525 45.5
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 2.5e-123 446.8 533 44.7
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.1e-122 443.7 517 46.6
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.4e-121 441.0 563 42.8
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.4e-121 441.0 532 46.4
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 2.4e-121 440.3 527 44.6
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 3.1e-121 439.9 530 45.8
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 4.0e-121 439.5 529 47.1
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 2.9e-119 433.3 553 45.4
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.1e-118 431.4 543 44.2
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.9e-118 430.6 531 45.6
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 7.1e-118 428.7 534 43.4
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 7.1e-118 428.7 534 43.6
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 2.7e-117 426.8 515 45.2
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.0e-116 424.9 521 44.3
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.3e-116 424.5 546 42.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.3e-116 423.7 546 42.3
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.0e-116 423.3 546 42.3
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 4.3e-115 419.5 546 42.1
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.4e-113 414.5 545 43.9
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 1.4e-113 414.5 527 43.8
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.8e-113 414.1 519 43.9
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.5e-112 411.0 530 42.3
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 3.4e-112 409.8 543 43.3
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 3.2e-110 403.3 503 45.1
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.6e-109 401.0 544 43.2
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 2.1e-109 400.6 463 46.0
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 2.7e-109 400.2 535 42.6
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 4.6e-109 399.4 532 42.5
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 6.7e-108 395.6 521 43.8
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 7.4e-107 392.1 540 42.2
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.6e-107 391.7 546 40.1
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.6e-106 391.0 537 42.1
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 6.2e-106 389.0 526 41.8
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.4e-105 387.9 516 43.0
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 6.9e-105 385.6 530 41.5
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 1.5e-104 384.4 551 40.5
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.7e-103 380.9 537 41.9
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 9.3e-102 375.2 532 39.5
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.2e-101 374.8 523 40.7
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 1.2e-101 374.8 496 44.0
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.5e-101 373.2 532 39.1
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 6.1e-101 372.5 519 40.7
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 2.5e-99 367.1 529 40.5
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 4.3e-99 366.3 530 40.4
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 3.7e-98 363.2 529 39.9
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 5.3e-97 359.4 532 40.2
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 4.5e-96 356.3 464 45.3
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 3.6e-93 346.7 530 39.4
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 3.6e-93 346.7 499 39.5
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 3.6e-93 346.7 362 49.7
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 1.1e-91 341.7 367 50.1
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 4.3e-91 339.7 553 38.2
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 6.3e-90 335.9 369 47.7
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 6.9e-89 332.4 516 36.2
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 2.0e-88 330.9 494 39.9
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 4.5e-88 329.7 529 38.0
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 1.3e-87 328.2 430 43.0
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 6.5e-87 325.9 395 46.1
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 6.1e-85 319.3 542 36.9
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.2e-80 305.1 507 36.3
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 1.0e-79 302.0 359 47.6
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 2.7e-77 293.9 512 35.2
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 5.2e-76 289.7 541 35.1
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 8.2e-74 282.3 339 44.8
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 2.2e-71 274.2 511 34.2
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 1.9e-70 271.2 471 36.5
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 4.7e-69 266.5 520 35.2
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 1.1e-62 245.4 592 30.9
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 9.8e-59 232.3 666 29.0
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 3.7e-58 230.3 308 41.2
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 1.4e-57 228.4 368 39.7
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 4.1e-57 226.9 307 41.7
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.2e-56 225.3 434 34.8
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.6e-53 214.9 244 44.3
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.2e-51 208.8 247 43.7
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.0e-51 208.0 254 44.5
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 3.5e-40 170.6 284 38.7
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 1.7e-39 168.3 149 55.7
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 9.5e-38 162.5 104 71.2
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 3.1e-36 157.5 669 25.7
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.0e-36 157.1 145 56.6
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.5e-35 155.2 154 53.2
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 2.6e-35 154.5 105 64.8
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 9.8e-35 152.5 151 52.3
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 4.1e-33 147.1 136 52.2
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.0e-31 142.5 158 46.2
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 3.0e-31 141.0 97 61.9
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 8.6e-31 139.4 125 51.2
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 5.6e-30 136.7 153 45.1
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.2e-28 130.2 118 51.7
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 2.2e-26 124.8 94 61.7
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.2e-25 120.9 186 38.2
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 2.7e-24 117.9 79 64.6
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 3.5e-24 117.5 396 30.3
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 3.9e-23 114.0 149 40.3
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 9.6e-22 109.4 100 48.0
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 2.1e-21 108.2 81 56.8
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 6.2e-21 106.7 105 50.5
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 3.1e-20 104.4 90 52.2
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 1.3e-18 99.0 90 51.1
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 6.4e-18 96.7 89 47.2
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 4.2e-17 94.0 123 45.5
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 7.8e-16 89.7 86 48.8
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 1.0e-15 89.4 143 37.8
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 1.1e-14 85.9 75 58.7
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 1.3e-13 82.4 51 66.7
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 4.8e-13 80.5 69 52.2
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.1e-12 79.3 158 34.2
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 1.1e-12 79.3 95 45.3
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.4e-12 79.0 87 41.4
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.9e-12 76.6 73 50.7
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.4e-11 74.3 83 42.2
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.3e-10 72.4 95 40.0
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.3e-10 72.4 95 40.0
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.7e-10 72.0 171 31.6
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 3.8e-10 70.9 145 33.1
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-08 65.5 106 33.0
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-08 65.5 40 65.0
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 2.7e-08 64.7 82 46.3
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 8.7e-07 59.7 90 38.9
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.1e-06 59.3 47 55.3
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 2.5e-06 58.2 35 68.6


User provided reference genes

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