Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 4643.2 2391 100.0
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 3133.6 2407 69.3
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 2902.8 2405 66.1
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2311.2 2561 51.8
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2289.6 2570 51.4
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 2084.7 2663 47.1
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2027.3 2570 46.6
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2026.1 2553 47.3
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2011.9 2463 48.0
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 1978.8 2570 46.0
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1968.4 2549 47.0
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 1961.8 2558 46.2
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1959.9 2593 46.0
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1913.7 2550 45.3
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1897.9 2562 45.2
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1877.4 2566 43.6
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1870.9 2549 44.8
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1859.0 2558 44.4
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1851.3 2569 43.5
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1841.6 2566 43.7
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1832.0 2530 43.7
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1828.1 2528 43.6
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1828.1 2587 44.1
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1817.7 2545 43.7
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1810.4 2556 43.4
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1806.2 2564 42.2
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1799.6 2548 43.0
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1795.0 2580 42.8
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1790.4 2611 43.0
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1780.8 2533 43.6
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1771.1 2542 42.8
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1762.3 2520 42.1
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1757.3 2681 41.7
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1752.6 2595 42.0
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1739.9 2560 42.2
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1729.1 2329 44.5
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1717.6 2545 41.6
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1712.2 2546 41.1
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1683.3 2550 41.0
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1682.9 2602 41.2
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1677.9 2608 41.0
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1677.9 2211 45.9
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1676.4 2560 41.1
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1674.1 2564 40.7
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1668.7 2580 40.0
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1668.3 2524 40.8
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1663.7 2562 41.2
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1648.3 2545 40.3
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1638.2 2517 41.5
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1631.7 2543 40.5
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1631.3 2515 41.0
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1629.4 2550 39.8
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1627.5 2574 40.1
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1626.7 2568 40.3
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1623.6 2581 39.7
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1622.1 2513 41.1
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1617.4 2518 40.5
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1608.2 2619 39.8
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1600.5 2620 39.8
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1588.9 2556 39.8
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1587.4 2485 40.1
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1580.5 2550 39.5
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1560.0 2521 39.3
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1554.7 2542 40.4
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1550.8 2621 39.0
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1545.8 2239 42.3
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1542.7 2527 39.5
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1522.7 1991 45.9
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1512.3 2577 38.6
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1503.4 2521 38.8
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1453.3 2485 39.0
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1444.1 2617 38.1
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1434.5 2245 40.9
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1393.6 2579 37.8
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1392.1 2430 38.1
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1391.3 2609 37.3
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1379.4 2584 37.4
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1378.2 2510 36.9
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1367.4 2615 37.0
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1357.8 1758 46.7
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1336.6 2479 36.9
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1333.2 2527 36.2
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1329.7 2086 40.7
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1300.8 2592 35.2
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1283.9 2002 40.1
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1280.0 2511 36.0
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1232.6 2525 35.0
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1213.4 2319 36.1
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1208.0 2526 34.8
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1177.5 2209 37.0
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1142.5 1692 42.3
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1121.7 2013 36.2
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1115.9 1729 42.3
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1102.8 2031 36.9
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1099.3 2170 36.3
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.5e-294 1016.9 1743 37.9
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 7.6e-283 978.8 2379 33.2
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 5.5e-257 892.9 737 64.6
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.2e-234 817.8 905 50.9
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 5.2e-191 673.7 2700 26.2
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 4.9e-189 667.2 2641 26.7
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 1.8e-188 665.2 2450 26.9
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.1e-183 649.4 2417 27.1
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 8.9e-183 646.4 569 60.5
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.2e-182 646.0 809 46.4
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 7.1e-164 583.6 1204 36.0
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.0e-162 579.7 1076 38.0
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 4.7e-160 570.9 574 55.7
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 8.7e-146 523.5 1149 33.2
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 5.6e-145 520.8 727 42.9
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 9.6e-145 520.0 2664 24.8
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.5e-142 512.7 575 50.6
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.5e-134 484.6 755 40.3
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 3.1e-127 461.8 621 46.7
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.0e-122 445.3 914 35.4
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 5.1e-122 444.5 1124 33.3
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.0e-109 403.7 399 55.4
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.8e-106 392.9 566 42.9
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 4.8e-96 358.2 530 40.4
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.5e-94 352.1 649 36.8
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.3e-85 323.6 470 42.6
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 8.3e-80 304.3 859 31.3
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.8e-79 303.1 421 42.0
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 1.0e-74 287.3 315 52.7
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 1.5e-73 283.5 275 57.5
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 3.2e-71 275.8 397 42.3
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.2e-49 204.1 197 59.9
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 2.2e-48 199.9 418 32.8
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 2.5e-44 186.4 182 56.6
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.8e-40 172.6 488 30.3
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.1e-39 171.0 282 40.1
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 1.2e-38 167.5 341 32.6
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 1.6e-38 167.2 232 40.5
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 7.3e-36 158.3 340 33.5
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.3e-35 157.5 144 56.2
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 6.4e-32 145.2 143 53.8
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.8e-26 127.1 318 33.0
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 3.1e-26 126.3 247 36.4
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 1.5e-25 124.0 141 45.4
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 2.6e-25 123.2 120 47.5
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 7.6e-25 121.7 331 32.9
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.4e-23 117.5 154 43.5
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.1e-18 101.3 92 57.6
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 1.1e-18 101.3 127 48.0
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.0e-18 99.4 139 41.7
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.5e-17 97.4 232 36.6
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 7.6e-17 95.1 118 41.5
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.6e-14 87.4 203 32.5
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 2.7e-14 86.7 366 23.2
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.3e-13 84.3 348 24.7
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 3.0e-13 83.2 67 59.7
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 4.3e-12 79.3 150 36.0
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 4.3e-12 79.3 365 23.0
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 4.3e-12 79.3 365 23.0
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 1.3e-11 77.8 306 27.1
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 3.1e-10 73.2 79 49.4
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.1e-10 73.2 169 33.1
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.0e-08 68.2 424 21.5
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 1.3e-08 67.8 64 46.9
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 8.5e-08 65.1 67 53.7
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 8.5e-08 65.1 67 53.7
SEGI_13878 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.2e-07 62.8 151 33.1
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 1.6e-06 60.8 68 51.5
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 2.7e-06 60.1 148 31.8
arahy.Tifrunner.gnm1.ann1.PHJ7DT Arachis hypogaea HOM05D003876 ORTHO05D004560 3.6e-06 59.7 127 32.3
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 4.6e-06 59.3 62 41.9
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 4.6e-06 59.3 62 48.4
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 7.9e-06 58.5 149 29.5


User provided reference genes

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