Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 3.5e-161 571.6 302 100.0
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 8.4e-147 523.9 282 92.6
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 4.3e-127 458.4 281 83.6
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 7.4e-127 457.6 282 83.0
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.3e-126 456.8 282 83.3
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.6e-126 456.4 282 82.3
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 2.2e-126 456.1 282 83.3
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 2.8e-126 455.7 282 83.0
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 2.8e-126 455.7 282 82.6
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 4.8e-126 454.9 302 79.8
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 4.8e-126 454.9 302 79.8
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 4.8e-126 454.9 282 83.3
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.1e-125 453.8 282 83.0
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.4e-125 453.4 282 82.6
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 1.8e-125 453.0 282 82.6
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 3.1e-125 452.2 302 78.5
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 4.1e-125 451.8 282 82.3
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 5.3e-125 451.4 283 83.4
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 9.0e-125 450.7 282 81.6
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.5e-124 449.9 281 82.2
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.5e-124 449.9 284 82.7
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.5e-124 449.9 282 81.9
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 4.5e-124 448.4 282 82.3
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 5.9e-124 448.0 282 81.2
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 5.9e-124 448.0 282 81.9
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 1.0e-123 447.2 282 81.9
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.0e-123 447.2 281 81.9
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 1.3e-123 446.8 282 80.9
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.7e-123 446.4 282 81.2
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.7e-123 446.4 282 81.6
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 1.7e-123 446.4 283 81.6
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 2.2e-123 446.0 282 81.6
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.2e-123 446.0 282 81.2
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 2.9e-123 445.7 282 81.9
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 6.5e-123 444.5 284 81.3
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 6.5e-123 444.5 282 81.2
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.1e-122 443.7 281 81.1
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.1e-122 443.7 302 78.1
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.4e-122 443.4 282 81.6
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.9e-122 443.0 302 77.2
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.2e-122 442.2 302 77.2
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 4.2e-122 441.8 282 80.9
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.2e-122 441.8 302 76.5
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.5e-122 441.4 308 75.6
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 9.4e-122 440.7 313 74.4
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.6e-121 439.9 282 80.5
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.6e-121 439.9 284 79.9
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 2.7e-121 439.1 282 80.1
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 3.6e-121 438.7 302 77.2
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 6.1e-121 438.0 282 79.4
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 7.9e-121 437.6 281 80.4
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 7.9e-121 437.6 283 80.2
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.8e-120 436.4 281 80.1
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 2.3e-120 436.0 302 76.5
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 3.0e-120 435.6 302 78.5
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 3.0e-120 435.6 282 80.1
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 3.9e-120 435.3 282 79.4
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.1e-119 433.7 282 78.7
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.5e-119 433.3 283 79.2
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 2.0e-119 433.0 282 78.7
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 2.0e-119 433.0 282 78.7
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 4.3e-119 431.8 276 81.2
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.3e-118 430.3 300 78.3
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 2.8e-118 429.1 279 78.9
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 8.2e-118 427.6 282 77.7
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 8.2e-118 427.6 279 78.5
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.1e-117 427.2 302 72.8
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.1e-117 427.2 282 78.7
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.4e-117 426.0 287 78.0
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 6.9e-117 424.5 282 79.1
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 9.1e-117 424.1 317 71.9
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.5e-116 423.3 282 75.9
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 2.6e-116 422.5 325 70.5
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 3.4e-116 422.2 282 75.5
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 4.5e-116 421.8 282 77.0
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.0e-115 420.6 282 77.7
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 1.3e-115 420.2 282 75.2
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.3e-115 420.2 282 75.2
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.3e-115 420.2 282 75.2
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.7e-115 419.9 298 74.8
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 2.9e-115 419.1 282 75.2
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 3.8e-115 418.7 282 74.5
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 3.8e-115 418.7 319 70.2
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 6.5e-115 417.9 282 76.6
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 6.5e-115 417.9 286 78.0
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 1.1e-114 417.2 280 77.5
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.4e-114 416.8 282 75.9
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 3.2e-114 415.6 286 77.3
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 7.2e-114 414.5 319 71.8
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.2e-113 413.7 306 70.9
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 2.7e-113 412.5 306 73.5
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 7.9e-113 411.0 289 74.7
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 6.7e-112 407.9 282 74.5
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 8.8e-112 407.5 282 73.4
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 8.8e-112 407.5 282 75.5
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 8.8e-112 407.5 282 75.5
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 1.1e-111 407.1 283 74.2
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.5e-111 406.8 283 73.9
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 2.0e-111 406.4 321 69.8
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 2.0e-111 406.4 283 73.5
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.3e-110 403.7 318 68.6
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.7e-110 403.3 305 71.8
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 1.4e-109 400.2 289 76.1
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 9.1e-109 397.5 282 75.5
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.5e-108 396.7 253 81.4
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.7e-108 394.4 273 71.4
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 8.5e-107 391.0 282 71.3
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.6e-100 369.4 273 69.2
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 3.0e-96 355.9 231 79.2
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 2.0e-95 353.2 242 76.0
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 4.4e-95 352.1 232 77.2
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.7e-92 342.8 284 67.3
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.7e-92 342.8 284 67.3
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 3.5e-92 342.4 282 67.4
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.0e-91 340.9 264 67.4
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 1.7e-86 323.6 277 63.2
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 3.7e-86 322.4 287 59.9
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 3.7e-86 322.4 289 60.6
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.3e-86 321.2 213 78.9
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.1e-85 320.9 248 67.3
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.6e-84 317.0 291 60.5
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.9e-82 310.1 296 58.8
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.0e-80 304.3 255 63.9
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 2.6e-79 299.7 220 71.4
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 7.5e-79 298.1 180 83.3
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.7e-75 287.0 271 57.6
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 4.7e-73 278.9 190 79.5
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 6.2e-73 278.5 211 66.8
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 6.8e-72 275.0 199 74.4
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 2.4e-69 266.5 190 74.7
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 7.3e-66 255.0 248 62.1
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 5.1e-59 232.3 199 63.8
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.1e-52 210.3 155 74.8
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.4e-45 187.6 96 93.8
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 4.2e-45 186.0 104 85.6
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.0e-43 179.9 116 77.6
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 5.3e-40 169.1 122 76.2
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 9.0e-40 168.3 115 73.9
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.6e-39 166.8 267 38.6
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 9.9e-39 164.9 104 78.8
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.7e-38 164.1 122 71.3
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.9e-34 150.6 78 92.3
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 5.6e-34 149.1 90 80.0
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 2.4e-32 143.7 98 73.5
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 9.9e-31 138.3 246 41.1
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 8.4e-30 135.2 266 32.0
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 8.4e-30 135.2 83 79.5
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 6.0e-28 129.0 256 34.0
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 3.9e-27 126.3 65 92.3
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.5e-23 114.4 267 31.8
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 2.5e-21 107.1 195 37.4
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 1.6e-20 104.4 127 50.4
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 2.1e-20 104.0 127 53.5
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 4.6e-20 102.8 114 57.0
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 6.0e-20 102.4 127 52.0
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 6.0e-20 102.4 127 52.0
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.8e-19 100.9 127 52.0
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 1.9e-18 97.4 127 51.2
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 2.5e-18 97.1 127 51.2
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.2e-17 92.0 45 100.0
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 3.4e-15 86.7 164 35.4
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 1.0e-14 85.1 46 84.8
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 3.8e-14 83.2 63 68.3
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 6.5e-14 82.4 96 52.1
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 8.4e-14 82.0 164 35.4
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 5.5e-13 79.3 84 56.0
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 2.4e-08 63.9 47 76.6


User provided reference genes

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