Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 1.3e-168 596.3 300 100.0
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 5.2e-149 531.2 300 87.7
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 9.2e-146 520.4 295 86.1
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 3.0e-136 488.8 300 80.0
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 7.3e-135 484.2 300 79.0
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 1.3e-134 483.4 291 80.1
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 2.8e-134 482.3 300 78.7
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 3.6e-134 481.9 300 79.0
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 1.2e-132 476.9 300 76.7
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 1.5e-132 476.5 300 77.7
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 4.4e-132 474.9 290 80.0
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 5.8e-132 474.6 291 79.4
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 7.6e-132 474.2 298 78.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 9.9e-132 473.8 291 79.0
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 9.9e-132 473.8 300 77.0
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 1.3e-131 473.4 296 77.4
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 1.7e-131 473.0 301 77.1
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 1.7e-131 473.0 294 78.9
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 6.4e-131 471.1 290 79.0
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 1.1e-130 470.3 299 76.6
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 1.4e-130 469.9 290 79.0
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 1.9e-130 469.5 291 78.4
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 2.4e-130 469.2 290 79.0
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 2.4e-130 469.2 300 77.3
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 3.2e-130 468.8 290 78.3
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 3.2e-130 468.8 301 75.7
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 4.2e-130 468.4 300 75.3
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 7.1e-130 467.6 299 75.6
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 7.1e-130 467.6 300 76.7
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 9.3e-130 467.2 303 77.6
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 1.6e-129 466.5 300 77.3
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 2.1e-129 466.1 298 76.8
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 2.7e-129 465.7 300 75.7
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 3.5e-129 465.3 301 75.7
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 4.6e-129 464.9 303 76.2
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 6.0e-129 464.5 311 75.6
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 1.3e-128 463.4 300 75.3
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 1.3e-128 463.4 301 75.1
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 1.7e-128 463.0 300 74.7
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 3.0e-128 462.2 302 75.8
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 3.0e-128 462.2 300 77.3
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 3.9e-128 461.8 301 75.4
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 8.7e-128 460.7 300 77.0
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 1.1e-127 460.3 298 76.2
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.1e-127 460.3 301 74.8
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 1.1e-127 460.3 301 76.1
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 2.5e-127 459.1 300 76.7
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 3.3e-127 458.8 302 73.8
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 4.3e-127 458.4 300 74.3
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 9.6e-127 457.2 299 74.9
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 9.6e-127 457.2 295 75.9
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 1.3e-126 456.8 302 75.2
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 2.1e-126 456.1 290 76.9
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 6.2e-126 454.5 300 74.3
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 8.1e-126 454.1 291 75.6
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 1.1e-125 453.8 304 75.3
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 1.1e-125 453.8 291 74.9
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 3.1e-125 452.2 297 74.4
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 4.0e-125 451.8 300 74.0
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 5.3e-125 451.4 324 70.7
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 6.9e-125 451.1 300 74.3
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 9.0e-125 450.7 291 75.3
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 9.0e-125 450.7 291 75.3
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 9.0e-125 450.7 291 75.3
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 9.0e-125 450.7 291 74.9
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 1.2e-124 450.3 301 75.4
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 1.2e-124 450.3 301 74.1
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 2.0e-124 449.5 291 74.6
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 2.6e-124 449.1 292 76.4
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 3.4e-124 448.7 291 73.5
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 5.8e-124 448.0 291 72.9
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.2e-123 446.0 325 70.2
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 2.9e-123 445.7 322 69.9
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 3.8e-123 445.3 291 72.9
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 4.9e-123 444.9 291 73.5
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 3.5e-121 438.7 300 73.3
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 3.5e-121 438.7 291 71.8
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 3.0e-120 435.6 284 74.3
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 3.0e-120 435.6 300 73.0
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 4.3e-119 431.8 282 76.2
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 8.1e-118 427.6 300 72.0
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 1.8e-117 426.4 280 74.3
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 2.4e-117 426.0 304 70.4
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 2.6e-116 422.5 240 83.8
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 4.5e-116 421.8 290 69.3
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 3.8e-115 418.7 269 78.4
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.1e-114 417.2 246 81.3
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.8e-112 409.8 300 70.7
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 1.1e-111 407.1 291 68.7
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.9e-111 406.4 301 66.8
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 5.7e-111 404.8 270 75.2
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 3.1e-109 399.1 241 79.7
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 3.1e-109 399.1 268 71.6
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 1.2e-108 397.1 238 79.4
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 4.6e-105 385.2 222 82.4
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 4.1e-101 372.1 248 73.4
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 3.4e-100 369.0 239 74.9
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 3.3e-95 352.4 297 58.2
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 5.0e-91 338.6 287 57.5
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 4.7e-89 332.0 237 65.0
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 8.2e-86 321.2 283 63.3
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 3.1e-85 319.3 410 47.6
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 1.6e-81 307.0 209 70.8
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 7.7e-68 261.5 247 55.9
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 1.1e-58 231.1 153 76.5
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 3.6e-57 226.1 292 41.1
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 8.9e-56 221.5 259 52.1
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 1.2e-55 221.1 236 47.0
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 3.3e-50 203.0 117 75.2
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 8.9e-48 194.9 117 78.6
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 8.9e-48 194.9 189 54.0
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 1.9e-42 177.2 186 54.3
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 1.7e-38 164.1 178 52.2
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 2.4e-37 160.2 233 40.3
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 5.4e-37 159.1 100 77.0
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 9.2e-29 131.7 76 82.9
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 6.6e-27 125.6 82 75.6
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 1.7e-22 110.9 73 75.3
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 2.7e-20 103.6 60 83.3
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 1.8e-16 90.9 53 81.1
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 6.9e-16 89.0 51 74.5
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 4.5e-15 86.3 191 36.1
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 4.2e-13 79.7 44 79.5
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 3.5e-12 76.6 59 62.7
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 1.0e-11 75.1 120 36.7
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 3.0e-11 73.6 54 68.5
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 9.6e-10 68.6 166 31.9
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 1.4e-08 64.7 170 30.0
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 1.8e-08 64.3 181 29.8
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 4.5e-07 59.7 60 58.3
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 4.5e-07 59.7 166 30.7
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 5.8e-07 59.3 170 28.2
Lsat_1_v5_gn_3_11781 Lactuca sativa HOM05D000104 ORTHO05D008354 7.6e-07 58.9 59 50.8
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 9.9e-07 58.5 42 69.0
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 9.9e-07 58.5 82 46.3
Lsat_1_v5_gn_5_43780 Lactuca sativa HOM05D005598 ORTHO05D008354 3.8e-06 56.6 40 65.0
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 8.4e-06 55.5 26 88.5


User provided reference genes

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