Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 2764.2 1421 100.0
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1961.0 1184 83.0
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1920.6 1182 81.5
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1684.8 1203 70.9
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1625.9 1204 68.6
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1615.9 1209 67.2
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1615.5 1201 67.9
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1611.7 1198 67.2
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1611.3 1209 67.9
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1610.5 1201 68.4
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1607.4 1198 67.0
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1604.0 1200 67.7
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1599.7 1200 67.2
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1599.7 1202 66.8
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1597.8 1200 67.2
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1595.9 1204 67.2
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1593.9 1197 67.0
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1592.0 1200 66.9
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1590.5 1206 66.3
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1589.3 1196 66.6
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1585.1 1198 65.9
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1580.5 1197 67.2
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1578.9 1195 66.8
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1578.9 1200 66.2
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1576.6 1204 65.8
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1576.2 1203 66.2
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1570.1 1195 66.2
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1569.3 1169 68.3
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1568.5 1196 65.7
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1567.7 1196 65.8
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1566.6 1173 67.8
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1566.6 1201 66.2
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1566.6 1202 65.6
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1565.8 1196 65.6
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1565.8 1196 65.7
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1564.7 1196 65.6
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1560.0 1199 65.2
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1558.1 1199 66.5
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1550.4 1206 64.9
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1543.1 1198 64.5
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1538.5 1200 64.7
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1528.5 1170 66.2
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1527.3 1200 65.0
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1525.0 1200 64.5
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1523.1 1196 63.6
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1521.1 1195 64.1
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1520.0 1199 65.1
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1517.7 1201 64.8
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1514.2 1196 63.5
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1508.8 1207 63.5
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1498.0 1198 63.4
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1498.0 1200 63.4
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1497.6 1197 62.7
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1496.9 1198 63.4
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1494.9 1198 62.4
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1489.6 1198 61.9
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1488.4 1156 64.4
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1484.9 1206 61.9
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1483.8 1200 63.6
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1482.6 1206 61.8
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1482.2 1212 62.0
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1481.8 1206 61.7
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1481.5 1206 61.7
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1477.6 1202 62.1
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1477.6 1211 61.7
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1468.8 1200 61.6
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1468.4 1197 63.7
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1463.0 1195 63.0
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1463.0 1198 61.5
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1461.8 1198 61.4
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1461.0 1194 62.1
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1458.4 1198 60.8
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1457.2 1205 61.2
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1455.3 1194 62.2
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1451.4 1193 61.9
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1449.5 1195 61.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1446.4 1161 62.4
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1440.6 1190 60.9
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1440.6 1208 60.4
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1437.9 1198 60.4
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1430.2 1205 60.7
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1424.1 1171 60.7
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1413.3 1190 60.2
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1407.9 1256 58.3
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1406.0 1174 60.6
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1398.3 1186 60.2
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1390.6 1199 61.0
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1375.9 1133 61.8
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1370.5 1106 62.5
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1370.5 957 71.6
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1340.5 1192 58.5
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1332.4 1199 57.6
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1320.1 1282 56.6
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1303.5 1193 57.5
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1288.1 1132 57.5
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1280.4 1179 55.3
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1278.8 1209 55.2
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1268.1 1195 54.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1263.1 1201 54.0
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1246.1 985 62.2
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1128.6 1050 56.6
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1122.1 799 70.1
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1097.4 878 61.3
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 1.3e-306 1057.0 964 58.2
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.9e-294 1016.5 835 63.0
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 2.3e-271 939.9 1144 47.4
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 3.1e-268 929.5 1233 43.5
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.2e-265 919.5 1227 42.5
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.0e-263 912.9 1232 42.6
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 8.0e-248 861.7 630 68.9
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 2.7e-243 846.7 1188 41.3
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.3e-234 817.8 1180 42.6
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 6.6e-226 788.9 1152 41.9
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 2.3e-223 780.4 1152 41.7
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 9.2e-220 768.5 1137 41.8
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.8e-215 754.2 806 50.2
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 5.2e-207 726.1 1211 36.3
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 1.9e-204 717.6 1008 43.0
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 4.9e-197 693.0 588 62.4
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.9e-181 640.6 566 56.9
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.4e-181 639.0 631 52.0
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.1e-167 594.0 535 55.9
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 8.0e-155 552.7 471 61.6
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.0e-146 525.8 415 64.8
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.0e-141 506.9 486 53.5
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 4.6e-110 404.1 320 64.1
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 2.4e-95 355.1 296 61.8
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 9.0e-82 310.1 1367 24.1
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 6.7e-69 267.3 204 64.7
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.6e-67 262.7 267 51.3
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 1.2e-62 246.5 186 66.7
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.3e-61 243.0 210 59.0
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.2e-54 219.9 430 33.3
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 2.1e-54 219.2 202 56.4
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 4.1e-50 204.9 467 30.8
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 5.0e-40 171.4 1180 20.8
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.1e-39 170.2 108 74.1
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 7.2e-23 114.4 95 61.1
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 4.8e-19 101.7 73 69.9
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 5.4e-18 98.2 69 68.1
ECA233G3416 Erigeron canadensis HOM05D000014 ORTHO05D000093 7.0e-18 97.8 46 97.8
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 1.0e-16 94.0 45 95.6
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 7.2e-15 87.8 82 53.7
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.6e-14 86.7 345 27.2
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.4e-13 83.6 63 63.5
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 4.0e-13 82.0 328 24.7
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 2.2e-11 76.3 78 51.3
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 4.9e-11 75.1 79 45.6
ECA247G0081 Erigeron canadensis HOM05D018082 ORTHO05D000002 2.4e-10 72.8 69 72.5
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 5.4e-10 71.6 54 63.0
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 1.6e-09 70.1 54 61.1
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.6e-09 70.1 88 46.6
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 2.7e-09 69.3 48 70.8
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 3.5e-09 68.9 49 71.4
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 3.5e-09 68.9 49 71.4
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 5.9e-09 68.2 194 27.8
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 1.0e-08 67.4 69 44.9
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.0e-08 67.4 72 43.1
ECA246G0894 Erigeron canadensis HOM05D030108 ORTHO05D000004 1.9e-07 63.2 32 87.5
ECA246G4316 Erigeron canadensis HOM05D030108 ORTHO05D000004 3.3e-07 62.4 45 66.7
AT3G03110 Arabidopsis thaliana HOM05D002636 ORTHO05D003490 5.6e-07 61.6 227 25.6
AL3G12720 Arabidopsis lyrata HOM05D002636 ORTHO05D003490 7.3e-07 61.2 237 25.3
ECA246G3636 Erigeron canadensis HOM05D000214 ORTHO05D000131 9.5e-07 60.8 33 84.8
AT5G17020 Arabidopsis thaliana HOM05D002636 ORTHO05D003490 2.1e-06 59.7 253 24.5
Sp3g02150 Schrenkiella parvula HOM05D002636 ORTHO05D003490 2.1e-06 59.7 247 23.9
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 2.8e-06 59.3 62 53.2
CARHR077130 Cardamine hirsuta HOM05D002636 ORTHO05D003490 3.6e-06 58.9 221 24.0
ECA248G1614 Erigeron canadensis HOM05D001919 ORTHO05D004490 4.7e-06 58.5 31 83.9
AL6G28020 Arabidopsis lyrata HOM05D002636 ORTHO05D003490 6.1e-06 58.2 247 24.7
CARHR196150 Cardamine hirsuta HOM05D002636 ORTHO05D003490 8.0e-06 57.8 234 24.8


User provided reference genes

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