Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4825 Erigeron canadensis HOM05D003321 ORTHO05D186893 4.2e-300 1033.9 510 100.0
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 3.1e-32 144.1 424 28.8
vmacro05729 Vaccinium macrocarpon HOM05D003321 ORTHO05D005161 4.0e-32 143.7 396 28.8
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 5.2e-32 143.3 429 28.9
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 6.8e-32 142.9 424 29.0
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 2.0e-31 141.4 424 29.0
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 2.6e-31 141.0 427 28.1
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 3.4e-31 140.6 424 29.2
PSO384G3545 Papaver somniferum HOM05D003321 ORTHO05D005161 4.4e-31 140.2 426 29.6
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 4.4e-31 140.2 427 28.1
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 5.8e-31 139.8 424 28.3
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 5.8e-31 139.8 439 27.8
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 7.5e-31 139.4 439 27.8
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 7.5e-31 139.4 439 27.8
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 9.8e-31 139.0 439 27.8
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 1.3e-30 138.7 424 28.5
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.7e-30 138.3 424 28.5
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 2.2e-30 137.9 424 28.8
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 2.2e-30 137.9 425 28.7
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 2.2e-30 137.9 424 28.5
Potri.004G124000 Populus trichocarpa HOM05D003321 ORTHO05D005161 2.2e-30 137.9 419 27.9
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 2.9e-30 137.5 435 27.8
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 2.9e-30 137.5 471 27.8
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 2.9e-30 137.5 424 28.8
Potri.017G078500 Populus trichocarpa HOM05D003321 ORTHO05D005161 2.9e-30 137.5 419 27.9
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 2.9e-30 137.5 424 28.8
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 3.7e-30 137.1 424 28.1
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 3.7e-30 137.1 424 28.1
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 3.7e-30 137.1 424 28.3
Sabra17G0069700 Salix brachista HOM05D003321 ORTHO05D005161 3.7e-30 137.1 419 27.9
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 4.9e-30 136.7 426 28.2
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 4.9e-30 136.7 424 28.5
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 8.3e-30 136.0 424 28.1
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 8.3e-30 136.0 471 27.8
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 8.3e-30 136.0 424 28.3
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 1.1e-29 135.6 424 27.6
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 1.1e-29 135.6 424 28.1
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 1.4e-29 135.2 424 28.1
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 1.9e-29 134.8 424 27.8
TAR622G1354 Trochodendron aralioides HOM05D003321 ORTHO05D005161 1.9e-29 134.8 424 28.1
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 2.4e-29 134.4 424 28.8
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 3.2e-29 134.0 424 26.9
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 3.2e-29 134.0 424 27.8
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 3.2e-29 134.0 424 27.1
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 3.2e-29 134.0 432 26.6
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 4.1e-29 133.7 424 28.1
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 5.4e-29 133.3 424 28.1
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 5.4e-29 133.3 424 27.8
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 7.0e-29 132.9 441 27.7
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 9.2e-29 132.5 424 26.9
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 1.2e-28 132.1 424 27.6
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 1.2e-28 132.1 424 28.5
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 1.2e-28 132.1 420 26.9
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 1.2e-28 132.1 424 27.1
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 1.6e-28 131.7 424 26.4
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 1.6e-28 131.7 424 27.6
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 1.6e-28 131.7 424 27.6
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 1.6e-28 131.7 424 26.7
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 2.1e-28 131.3 424 27.4
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 2.7e-28 131.0 424 27.1
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 2.7e-28 131.0 424 27.6
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 2.7e-28 131.0 450 27.1
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 2.7e-28 131.0 424 27.6
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 2.7e-28 131.0 427 26.9
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 4.6e-28 130.2 424 27.6
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 4.6e-28 130.2 424 27.8
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 6.0e-28 129.8 424 26.7
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 6.0e-28 129.8 424 27.4
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 7.8e-28 129.4 424 26.7
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 1.0e-27 129.0 424 27.1
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 1.3e-27 128.6 424 27.4
PSO591G0346 Papaver somniferum HOM05D003321 ORTHO05D005161 1.3e-27 128.6 463 26.6
PSO832G3448 Papaver somniferum HOM05D003321 ORTHO05D005161 1.3e-27 128.6 463 26.6
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 1.7e-27 128.3 424 27.1
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 1.7e-27 128.3 421 27.3
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 1.7e-27 128.3 424 27.4
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 2.3e-27 127.9 424 26.7
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 2.3e-27 127.9 424 27.1
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 3.0e-27 127.5 423 27.4
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 3.0e-27 127.5 423 27.4
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 3.0e-27 127.5 423 27.4
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 3.0e-27 127.5 424 26.9
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 3.0e-27 127.5 455 26.8
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 3.0e-27 127.5 424 27.1
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 3.9e-27 127.1 423 27.4
Sc17g0001240 Simmondsia chinensis HOM05D003321 ORTHO05D005161 3.9e-27 127.1 424 27.4
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 5.1e-27 126.7 471 26.3
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 5.1e-27 126.7 425 27.3
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 5.1e-27 126.7 423 27.4
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 6.6e-27 126.3 458 26.9
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 6.6e-27 126.3 458 26.9
MD17G1047600 Malus domestica HOM05D003321 ORTHO05D005161 6.6e-27 126.3 424 26.4
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 6.6e-27 126.3 424 27.6
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 8.6e-27 125.9 458 26.9
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 8.6e-27 125.9 424 26.9
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 8.6e-27 125.9 446 26.5
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 8.6e-27 125.9 423 27.0
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.1e-26 125.6 458 26.9
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 1.5e-26 125.2 424 27.4
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 1.9e-26 124.8 413 27.4
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.9e-26 124.8 458 26.4
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 2.5e-26 124.4 454 26.4
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 2.5e-26 124.4 426 27.2
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 3.3e-26 124.0 472 26.3
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 4.3e-26 123.6 424 26.9
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 4.3e-26 123.6 412 27.7
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 7.3e-26 122.9 427 26.5
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 7.3e-26 122.9 423 27.7
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 7.3e-26 122.9 422 28.7
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 7.3e-26 122.9 427 27.4
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 1.6e-25 121.7 427 26.5
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 2.1e-25 121.3 413 26.9
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 2.1e-25 121.3 427 26.0
SEGI_27754 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 2.1e-25 121.3 427 26.7
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 2.1e-25 121.3 423 26.7
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 2.8e-25 120.9 424 26.4
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 2.8e-25 120.9 362 28.5
arahy.Tifrunner.gnm1.ann1.QM6JB0 Arachis hypogaea HOM05D003321 ORTHO05D005161 3.6e-25 120.6 424 26.7
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 3.6e-25 120.6 420 27.1
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 4.7e-25 120.2 427 26.2
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 4.7e-25 120.2 427 26.2
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 4.7e-25 120.2 427 26.2
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 4.7e-25 120.2 427 26.2
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 6.2e-25 119.8 409 27.4
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 6.2e-25 119.8 420 27.4
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 8.1e-25 119.4 424 26.2
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 8.1e-25 119.4 424 26.2
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 1.1e-24 119.0 443 26.2
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 1.8e-24 118.2 420 26.0
SEGI_13423 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 4.0e-24 117.1 426 25.1
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 5.2e-24 116.7 424 26.9
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 6.8e-24 116.3 427 25.5
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 1.5e-23 115.2 421 25.4
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 3.4e-23 114.0 425 26.8
SGA_v2.0_scaffold205G41773 Striga asiatica HOM05D003321 ORTHO05D005161 3.2e-21 107.5 367 26.4
Cc07_g03060 Coffea canephora HOM05D003321 ORTHO05D005161 2.7e-20 104.4 290 27.6
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 3.5e-20 104.0 435 24.8
SMO356G0125 Selaginella moellendorffii HOM05D003321 ORTHO05D005161 6.0e-20 103.2 428 24.8
Pp3c9_4400 Physcomitrium patens HOM05D003321 ORTHO05D005161 2.3e-19 101.3 429 24.5
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 5.1e-19 100.1 435 24.6
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 1.5e-18 98.6 399 23.8
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 9.9e-15 85.9 328 24.1
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 2.2e-14 84.7 315 25.7
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 2.9e-14 84.3 384 24.7
ECA232G0678 Erigeron canadensis HOM05D001716 ORTHO05D005286 2.9e-14 84.3 46 87.0
Cre01.g029450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D005161 6.4e-14 83.2 371 23.2
MCO12G387 Micromonas commoda HOM05D003321 ORTHO05D005161 1.6e-12 78.6 371 22.1
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 3.5e-12 77.4 330 25.8
PRCOL_00006095 Prasinoderma coloniale HOM05D003321 ORTHO05D005161 4.3e-10 70.5 435 21.6
Lj1g0009615 Lotus japonicus HOM05D003321 ORTHO05D005161 5.6e-10 70.1 229 26.2
CSS0018217 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 2.8e-09 67.8 139 30.2
CSS0041948 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 2.8e-09 67.8 139 30.2
Glyma.13G064800 Glycine max HOM05D003321 ORTHO05D005161 3.1e-08 64.3 214 25.7
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 9.9e-07 59.3 232 25.4
Thhalv10008631m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 2.9e-06 57.8 189 24.3


User provided reference genes

Program Settings