Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 3.2e-237 824.7 416 100.0
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 2.1e-127 459.9 310 78.1
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 6.6e-118 428.3 297 73.7
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 3.2e-104 382.9 320 61.9
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 2.8e-100 369.8 308 62.0
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 8.1e-100 368.2 303 64.0
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 1.5e-98 364.0 305 62.0
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 1.5e-98 364.0 307 59.9
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 3.4e-98 362.8 310 63.9
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 3.4e-98 362.8 318 58.8
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 4.5e-98 362.5 308 59.1
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 5.8e-98 362.1 307 62.5
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 1.3e-97 360.9 310 60.3
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.7e-97 360.5 306 61.4
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.7e-97 360.5 316 59.8
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 6.4e-97 358.6 315 59.7
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 1.9e-96 357.1 304 61.2
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 2.4e-96 356.7 307 61.6
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 4.2e-96 355.9 307 59.3
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 7.1e-96 355.1 318 61.6
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 7.1e-96 355.1 310 60.3
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 7.1e-96 355.1 307 60.9
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 9.3e-96 354.8 307 59.6
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 9.3e-96 354.8 319 58.6
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.6e-95 354.0 305 60.0
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 2.1e-95 353.6 307 59.9
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 3.5e-95 352.8 319 57.7
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 4.6e-95 352.4 307 61.2
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 6.0e-95 352.1 310 60.0
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 3.9e-94 349.4 308 59.1
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 6.7e-94 348.6 315 58.1
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 1.5e-93 347.4 305 60.3
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.5e-93 347.4 307 59.3
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 1.9e-93 347.1 320 57.5
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 1.9e-93 347.1 315 57.8
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 2.5e-93 346.7 305 59.3
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 3.3e-93 346.3 309 58.9
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 3.3e-93 346.3 315 59.0
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 3.3e-93 346.3 302 59.9
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.3e-93 345.9 315 58.4
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 5.6e-93 345.5 314 58.6
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 9.6e-93 344.7 291 62.2
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.3e-92 344.4 315 58.4
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 1.3e-92 344.4 313 58.8
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 3.7e-92 342.8 314 58.0
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 3.7e-92 342.8 316 57.6
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 4.8e-92 342.4 309 57.3
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 6.2e-92 342.0 309 57.0
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 6.2e-92 342.0 316 58.2
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 6.2e-92 342.0 308 59.1
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 8.1e-92 341.7 328 56.7
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 2.4e-91 340.1 310 58.4
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 5.3e-91 339.0 316 57.3
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 5.3e-91 339.0 316 57.6
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 6.9e-91 338.6 319 56.1
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 1.0e-89 334.7 333 55.3
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.3e-89 334.3 317 57.7
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 1.7e-89 334.0 294 60.9
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 2.2e-89 333.6 319 54.9
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.4e-89 331.6 310 57.7
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.4e-89 331.6 310 57.7
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 4.2e-88 329.3 309 55.3
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 3.5e-87 326.2 311 56.3
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.6e-87 325.9 356 51.4
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.5e-85 320.9 285 62.1
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.5e-85 320.1 303 57.8
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 1.3e-84 317.8 325 54.2
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.5e-82 310.8 314 53.8
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 1.5e-82 310.8 312 54.8
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 8.5e-81 305.1 300 52.0
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 2.5e-80 303.5 287 56.1
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 4.2e-80 302.8 316 53.5
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.3e-78 297.7 285 54.7
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 2.3e-78 297.0 305 52.1
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 3.9e-78 296.2 313 54.0
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 1.5e-77 294.3 301 52.8
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 1.5e-77 294.3 301 53.5
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 1.5e-77 294.3 301 53.5
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.3e-76 291.2 299 53.2
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 2.2e-76 290.4 303 51.8
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 4.8e-76 289.3 296 52.4
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 6.3e-76 288.9 292 53.4
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 1.8e-75 287.3 297 52.9
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 4.1e-75 286.2 329 50.8
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 5.3e-75 285.8 299 52.5
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 9.1e-75 285.0 299 52.8
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 1.2e-74 284.6 290 54.1
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 4.5e-74 282.7 309 51.1
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 5.9e-74 282.3 311 49.8
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.7e-73 280.8 299 49.5
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 2.2e-73 280.4 306 51.3
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 2.2e-73 280.4 304 50.7
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 8.5e-73 278.5 306 51.0
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 1.9e-72 277.3 247 61.5
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 1.0e-65 255.0 278 50.0
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.0e-61 240.7 283 50.9
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 4.4e-61 239.6 181 66.3
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 1.4e-59 234.6 296 47.3
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.0e-58 230.7 332 41.0
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 1.0e-57 228.4 213 59.2
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 1.2e-53 214.9 180 62.8
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 9.7e-53 211.8 293 43.3
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 1.6e-50 204.5 315 38.1
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 2.0e-45 187.6 287 40.4
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 2.4e-43 180.6 279 37.6
HanXRQChr06g0168391 Helianthus annuus HOM05D006268 ORTHO05D048286 3.1e-43 180.3 125 79.2
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 5.9e-42 176.0 374 34.5
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 1.3e-36 158.3 165 55.2
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 4.5e-34 149.8 150 50.7
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 4.5e-34 149.8 163 48.5
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 6.6e-33 146.0 180 49.4
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 7.3e-32 142.5 109 63.3
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 7.5e-29 132.5 153 45.8
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 5.8e-21 106.3 116 51.7
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 1.0e-17 95.5 63 66.7
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 2.3e-17 94.4 74 58.1
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 3.9e-17 93.6 126 42.1
Lsat_1_v5_gn_7_10900 Lactuca sativa HOM05D006268 ORTHO05D048286 5.6e-16 89.7 78 62.8
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.1e-11 75.5 62 59.7
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 2.7e-10 70.9 55 61.8
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.1e-08 65.5 60 55.0
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 3.3e-08 63.9 63 60.3
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 1.2e-07 62.0 105 38.1
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 5.2e-06 56.6 59 45.8


User provided reference genes

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