Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 2053.5 1067 100.0
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1848.9 1086 88.2
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1830.5 1079 88.0
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1661.0 1074 78.1
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1637.9 1072 77.5
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1637.5 1081 76.5
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1614.0 1074 76.8
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1612.0 1076 74.9
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1610.9 1014 78.9
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1606.3 1076 75.4
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1601.6 1080 74.8
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1599.3 1072 74.8
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1595.9 1092 75.5
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1593.6 1009 77.5
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1591.2 1010 77.2
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1586.6 1074 73.9
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1586.2 1009 77.1
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1585.5 1074 74.0
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1585.1 1148 72.0
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1584.7 1081 73.6
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1584.3 1072 73.1
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1582.8 1077 73.7
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1580.8 1072 73.7
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1580.1 1079 73.7
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1574.7 1069 73.5
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1573.9 1077 74.0
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1573.1 1076 73.3
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1567.4 1076 73.9
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1564.3 1116 71.9
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1562.7 1067 74.0
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1562.4 1079 73.2
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1560.8 1109 73.5
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1560.0 1072 73.9
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1550.0 1078 72.7
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1535.8 1065 73.7
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1533.5 1085 71.2
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1530.4 1080 71.3
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1527.7 1077 72.2
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1525.8 1068 72.8
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1525.8 1077 71.8
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1523.5 1068 72.3
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1523.5 1089 71.5
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1522.3 997 75.3
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1521.5 1069 72.6
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1515.4 1166 68.3
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1512.3 1072 70.9
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1510.4 1072 70.7
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1510.0 1068 72.2
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1507.3 965 77.9
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1502.6 971 76.6
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1502.3 1072 71.1
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1497.3 944 79.6
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1493.8 1070 69.7
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1487.6 1074 70.4
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1487.2 1067 69.8
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1484.9 1070 69.8
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1476.8 1072 70.5
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1476.5 980 76.5
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1473.8 1072 70.4
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1471.1 1094 69.8
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1467.6 1076 70.6
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1466.8 1075 70.1
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1463.0 1076 70.1
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1461.0 1100 68.5
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1457.6 1075 69.5
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1451.8 1007 71.6
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1451.0 948 76.1
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1443.7 998 72.4
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1442.2 1229 62.7
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1439.9 1102 67.7
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1432.2 947 75.4
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1419.4 1036 68.1
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1412.1 1024 68.9
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1411.0 1015 68.4
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1401.3 1076 67.2
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1343.6 1189 61.4
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1333.5 978 67.1
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1290.0 1124 61.9
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1273.1 972 68.9
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1270.4 868 73.7
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1262.3 1089 62.4
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1248.4 884 71.7
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1246.1 1025 61.5
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1241.5 1034 60.3
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1224.9 1026 60.3
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1166.8 1029 56.3
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1141.7 1137 55.5
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 1.0e-308 1063.5 1099 55.0
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 8.8e-308 1060.4 1046 53.7
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 9.1e-305 1050.4 656 79.6
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 2.0e-288 996.1 751 66.7
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.7e-287 993.0 1023 50.7
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 5.2e-284 981.5 1004 53.7
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.4e-281 973.4 1025 51.2
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 3.6e-245 852.4 597 71.2
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 3.4e-243 845.9 618 69.1
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 3.0e-231 806.2 586 69.6
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 9.7e-206 721.5 499 73.1
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 8.8e-199 698.4 518 70.3
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 9.7e-198 694.9 472 73.7
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.5e-182 644.4 814 48.6
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 3.3e-177 626.7 513 65.1
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.1e-176 624.0 459 68.6
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 1.7e-170 604.4 410 72.4
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 6.4e-165 585.9 622 52.9
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 5.6e-161 572.8 383 74.9
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 3.2e-148 530.4 397 67.3
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 3.2e-148 530.4 359 75.5
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 3.0e-130 470.7 334 72.2
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 9.0e-127 459.1 285 80.0
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 2.0e-126 458.0 326 71.2
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.8e-125 453.8 307 75.6
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 1.6e-123 448.4 392 63.3
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.7e-112 410.6 293 68.6
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.3e-108 396.0 815 36.1
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.4e-102 377.5 213 84.5
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.1e-92 345.9 241 71.4
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 1.3e-80 305.8 292 50.7
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.1e-79 301.2 219 68.9
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 1.0e-66 259.6 173 79.2
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.3e-56 226.1 176 68.2
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 2.3e-53 215.3 142 75.4
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 1.2e-51 209.5 192 59.9
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 5.0e-45 187.6 203 56.7
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 8.6e-45 186.8 150 61.3
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.2e-38 166.4 101 81.2
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 4.3e-36 157.9 143 55.2
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 2.8e-35 155.2 99 80.8
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 6.2e-35 154.1 105 73.3
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 4.0e-34 151.4 84 89.3
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 2.6e-33 148.7 148 52.0
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 3.4e-33 148.3 137 54.0
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.4e-33 147.9 112 64.3
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 7.8e-30 137.1 90 71.1
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 2.4e-26 125.6 103 56.3
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 2.6e-25 122.1 92 63.0
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.6e-25 122.1 121 57.9
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.6e-25 122.1 121 57.9
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 5.4e-23 114.4 86 70.9
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 1.7e-21 109.4 197 36.5
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 1.3e-19 103.2 73 67.1
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 7.6e-17 94.0 54 81.5
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.1e-15 90.1 67 68.7
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.2e-15 88.6 69 62.3
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 5.1e-13 81.3 137 40.9
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 5.6e-12 77.8 51 68.6
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 3.1e-10 72.0 55 61.8
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 6.9e-10 70.9 59 62.7
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 5.5e-07 61.2 46 60.9
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 5.5e-07 61.2 46 60.9
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 5.5e-07 61.2 46 60.9
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 9.3e-07 60.5 46 60.9
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 9.3e-07 60.5 46 60.9
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 9.3e-07 60.5 29 86.2
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 3.5e-06 58.5 45 60.0
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 4.6e-06 58.2 46 58.7
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 6.0e-06 57.8 36 69.4


User provided reference genes

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