Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 8.1e-237 824.7 696 100.0
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 2.9e-173 613.6 345 85.8
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 5.2e-159 566.2 355 80.0
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 1.3e-138 498.4 352 70.5
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 3.9e-138 496.9 351 69.2
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 8.7e-138 495.7 363 68.9
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 4.3e-137 493.4 362 68.0
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 5.6e-137 493.0 404 62.1
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.1e-136 491.1 362 67.7
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 8.1e-136 489.2 367 66.2
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 8.1e-136 489.2 365 67.9
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 1.1e-135 488.8 364 66.5
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 1.4e-135 488.4 370 65.4
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 2.4e-135 487.6 361 67.0
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 3.1e-135 487.3 371 66.8
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 3.1e-135 487.3 377 64.5
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 3.1e-135 487.3 367 65.9
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 4.0e-135 486.9 371 65.5
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 9.0e-135 485.7 378 65.3
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 1.2e-134 485.3 361 66.2
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 1.2e-134 485.3 367 66.2
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 1.5e-134 485.0 377 64.5
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 5.8e-134 483.0 376 65.7
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 9.9e-134 482.3 362 66.0
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 9.9e-134 482.3 364 65.7
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 1.3e-133 481.9 379 65.7
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 2.9e-133 480.7 371 65.2
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 6.4e-133 479.6 368 66.0
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 9.3e-132 475.7 379 63.1
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 9.3e-132 475.7 389 61.7
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 1.6e-131 474.9 368 65.5
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 2.1e-131 474.6 378 64.3
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 4.6e-131 473.4 378 64.0
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 7.9e-131 472.6 371 64.4
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 1.0e-130 472.2 362 66.6
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 1.8e-130 471.5 377 61.8
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 3.9e-130 470.3 380 62.6
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 3.9e-130 470.3 375 63.5
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 6.7e-130 469.5 373 64.3
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 8.7e-130 469.2 380 62.9
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.1e-129 468.8 371 63.3
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 4.3e-129 466.8 372 63.4
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 4.3e-129 466.8 366 64.5
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 7.4e-129 466.1 374 63.9
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 9.6e-129 465.7 366 62.6
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 9.6e-129 465.7 359 65.7
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.1e-128 464.5 363 65.3
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 3.7e-128 463.8 374 63.6
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 4.8e-128 463.4 359 64.9
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 6.2e-128 463.0 349 66.8
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 6.2e-128 463.0 349 66.8
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 8.1e-128 462.6 358 64.2
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 1.1e-127 462.2 359 64.9
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 1.8e-127 461.5 359 64.1
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 3.1e-127 460.7 362 65.5
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 1.2e-126 458.8 369 63.4
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 4.5e-126 456.8 354 64.7
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 2.4e-124 451.1 361 62.6
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 3.2e-124 450.7 358 61.5
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 5.5e-124 449.9 359 63.5
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 4.6e-123 446.8 346 64.7
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 7.9e-123 446.0 375 61.6
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 2.3e-122 444.5 360 62.8
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 1.9e-121 441.4 373 61.7
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 2.4e-119 434.5 354 61.0
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 6.9e-119 433.0 375 57.9
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 6.9e-119 433.0 336 66.4
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 1.5e-118 431.8 363 60.6
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 2.0e-118 431.4 367 59.9
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 2.2e-117 427.9 350 61.1
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 1.9e-116 424.9 358 59.8
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 4.2e-116 423.7 367 59.9
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 1.6e-112 411.8 370 58.1
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 4.5e-110 403.7 335 63.6
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 7.6e-110 402.9 368 58.4
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 7.9e-107 392.9 345 58.8
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 3.0e-106 391.0 293 68.3
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 4.5e-102 377.1 310 62.9
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 2.9e-101 374.4 297 63.6
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 6.1e-99 366.7 345 53.3
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 1.1e-97 362.5 462 45.5
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 2.2e-93 348.2 350 53.7
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 3.2e-92 344.4 331 54.7
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 2.6e-89 334.7 279 61.3
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 2.2e-88 331.6 450 43.3
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 2.5e-84 318.2 371 48.8
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 1.6e-83 315.5 282 58.5
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 3.7e-80 304.3 359 49.9
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 1.0e-77 296.2 533 36.0
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 4.7e-75 287.3 265 56.2
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 4.4e-73 280.8 393 44.0
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 4.5e-70 270.8 170 74.7
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.3e-68 264.6 344 45.1
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 5.5e-68 263.8 255 56.1
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 6.1e-67 260.4 160 78.1
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 8.9e-66 256.5 261 53.6
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 1.2e-65 256.1 414 37.7
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.5e-65 255.8 263 52.9
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 3.7e-64 251.1 357 41.7
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 3.1e-63 248.1 281 52.0
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 2.7e-62 245.0 232 58.6
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 1.0e-61 243.0 185 63.2
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 2.5e-60 238.4 162 70.4
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 4.3e-44 184.5 194 53.6
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 2.8e-43 181.8 195 49.7
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 4.4e-41 174.5 122 71.3
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.9e-39 169.1 111 69.4
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 1.6e-38 166.0 406 35.2
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 1.6e-38 166.0 387 32.3
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 9.9e-33 146.7 288 37.2
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 3.5e-30 138.3 82 76.8
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 2.8e-27 128.6 84 72.6
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.7e-27 127.9 141 46.8
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 8.1e-27 127.1 174 39.7
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.3e-24 119.8 80 72.5
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.9e-24 117.9 80 67.5
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 8.4e-24 117.1 80 68.8
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 1.8e-18 99.4 57 75.4
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 2.0e-17 95.9 55 78.2
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 4.2e-15 88.2 55 74.5
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 4.6e-14 84.7 47 85.1
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.8e-13 82.8 63 60.3
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.8e-13 82.8 51 76.5
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 6.7e-13 80.9 63 58.7
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 7.4e-12 77.4 55 61.8
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 2.4e-10 72.4 54 55.6
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 3.1e-10 72.0 54 55.6
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.5e-09 69.7 54 57.4
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 2.6e-09 68.9 49 63.3
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 7.6e-09 67.4 50 58.0
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 9.9e-09 67.0 120 33.3
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 9.9e-09 67.0 51 58.8
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 1.7e-08 66.2 52 57.7
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 2.2e-08 65.9 54 55.6
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 4.9e-08 64.7 54 48.1
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 4.9e-08 64.7 47 61.7
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 6.4e-08 64.3 47 57.4
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 8.4e-08 63.9 48 58.3
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 1.1e-07 63.5 54 57.4
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.9e-07 62.8 43 67.4
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 2.5e-07 62.4 52 50.0
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 2.5e-07 62.4 51 49.0
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 4.2e-07 61.6 81 40.7
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 4.2e-07 61.6 45 60.0
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 5.5e-07 61.2 50 50.0
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 7.1e-07 60.8 30 86.7
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 7.1e-07 60.8 54 46.3
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 9.3e-07 60.5 48 52.1
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 9.3e-07 60.5 54 44.4
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 1.6e-06 59.7 51 51.0
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 1.6e-06 59.7 53 47.2
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 2.1e-06 59.3 53 54.7
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 2.1e-06 59.3 49 53.1
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 3.5e-06 58.5 48 58.3
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 3.5e-06 58.5 55 52.7
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 6.0e-06 57.8 46 52.2
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 6.0e-06 57.8 43 53.5
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 6.0e-06 57.8 54 44.4
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 6.0e-06 57.8 54 44.4
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 6.0e-06 57.8 54 44.4
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 6.0e-06 57.8 53 45.3
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 6.0e-06 57.8 47 59.6
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 7.9e-06 57.4 47 48.9
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 7.9e-06 57.4 55 50.9


User provided reference genes

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