Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 0.0e+00 1259.6 638 100.0
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 2.6e-150 536.6 674 51.2
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 5.8e-121 439.1 637 47.7
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 6.1e-62 243.0 751 31.6
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.1e-60 238.8 927 28.4
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.1e-55 222.2 892 27.6
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.5e-55 221.1 438 36.1
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 4.2e-55 220.3 989 27.3
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 6.7e-53 213.0 907 28.0
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 3.3e-52 210.7 1047 25.3
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 3.3e-52 210.7 431 35.5
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.3e-51 208.8 974 26.3
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.8e-51 207.6 895 27.4
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 1.8e-50 204.9 991 25.9
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.4e-50 204.5 906 27.5
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 6.9e-50 203.0 1094 25.0
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 1.5e-49 201.8 895 27.0
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.5e-49 201.8 966 26.0
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.5e-49 200.3 1047 25.4
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 8.5e-48 196.1 1007 25.7
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.1e-47 195.7 923 26.4
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 1.4e-47 195.3 985 26.0
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.2e-46 192.2 751 26.0
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 2.1e-46 191.4 747 27.3
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 2.1e-46 191.4 1035 24.6
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 2.3e-45 188.0 805 27.6
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 3.0e-45 187.6 746 27.1
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 3.3e-44 184.1 1095 24.8
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 7.4e-44 183.0 587 30.3
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 9.7e-44 182.6 513 30.2
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 1.3e-43 182.2 797 27.1
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 2.2e-43 181.4 391 35.3
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.8e-43 181.0 723 28.2
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 3.7e-43 180.6 1020 24.8
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 4.8e-43 180.3 586 29.5
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 8.2e-43 179.5 866 26.2
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.4e-42 178.7 734 26.0
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.1e-42 177.6 239 42.7
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 4.5e-41 173.7 997 24.3
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 5.9e-41 173.3 385 34.3
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.2e-40 171.4 166 54.2
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 4.2e-39 167.2 593 28.2
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.5e-39 166.8 324 36.1
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 9.4e-39 166.0 174 53.4
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 6.1e-38 163.3 596 28.4
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 6.1e-38 163.3 596 28.4
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 6.1e-38 163.3 596 28.4
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.0e-37 162.5 717 26.8
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 1.4e-37 162.2 210 44.8
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 6.7e-37 159.8 685 25.5
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 1.1e-36 159.1 170 50.0
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 2.6e-36 157.9 132 56.8
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 5.7e-36 156.8 174 47.7
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.8e-35 154.5 1005 24.3
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 3.7e-35 154.1 182 46.7
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.7e-35 154.1 157 54.1
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.7e-35 154.1 173 49.7
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 4.8e-35 153.7 172 47.1
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 6.3e-35 153.3 159 50.9
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 8.2e-35 152.9 175 46.9
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.1e-34 152.5 181 46.4
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 1.6e-33 148.7 175 46.3
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 2.0e-33 148.3 167 49.7
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.0e-33 148.3 153 51.6
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.5e-33 147.5 134 54.5
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 5.9e-33 146.7 163 47.2
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.0e-32 146.0 169 48.5
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 2.9e-32 144.4 133 55.6
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.8e-32 144.1 148 50.7
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 8.5e-32 142.9 193 42.0
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.5e-31 142.1 131 55.7
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.2e-31 141.0 594 25.8
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 4.2e-31 140.6 197 40.6
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 4.2e-31 140.6 149 49.7
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 7.2e-31 139.8 214 40.2
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 7.2e-31 139.8 143 47.6
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 9.4e-31 139.4 164 46.3
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.7e-30 137.9 174 42.5
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 2.7e-30 137.9 200 39.5
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 4.7e-30 137.1 188 41.0
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.1e-30 136.7 174 42.5
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 8.0e-30 136.3 170 42.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.0e-29 136.0 177 41.8
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.0e-29 136.0 669 24.1
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.4e-29 135.6 204 37.7
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.8e-29 135.2 168 47.6
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.8e-29 135.2 211 39.3
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 3.0e-29 134.4 204 37.3
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 5.2e-29 133.7 197 42.1
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 8.8e-29 132.9 192 40.6
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 8.8e-29 132.9 157 47.8
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 2.6e-28 131.3 158 42.4
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 4.4e-28 130.6 230 34.8
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 7.5e-28 129.8 157 47.1
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 1.7e-27 128.6 180 43.9
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.8e-27 127.9 178 42.7
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 3.1e-26 124.4 159 39.0
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 5.3e-26 123.6 422 27.5
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 7.0e-26 123.2 131 47.3
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.2e-25 122.5 206 37.4
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 1.6e-25 122.1 134 45.5
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 2.7e-25 121.3 162 43.8
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 3.5e-25 120.9 131 45.8
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 4.5e-25 120.6 133 45.9
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.0e-24 119.4 130 53.1
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.0e-24 119.4 215 35.8
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.7e-24 118.6 157 40.1
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 5.0e-24 117.1 181 37.0
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 2.7e-22 111.3 131 45.8
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 3.6e-22 110.9 110 51.8
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 5.2e-21 107.1 179 34.6
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 8.8e-21 106.3 162 37.0
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 2.8e-19 101.3 473 26.0
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 7.7e-17 93.2 361 26.6
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.0e-16 92.8 193 36.8
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.7e-16 92.0 510 25.1
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 5.0e-16 90.5 232 32.3
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 2.1e-14 85.1 128 44.5
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 6.1e-14 83.6 191 38.7
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 4.0e-13 80.9 206 30.1
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 5.2e-13 80.5 156 35.9
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.2e-12 79.3 90 42.2
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.5e-12 79.0 58 55.2
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 7.5e-12 76.6 224 28.6
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.8e-11 74.7 222 27.0
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 5.4e-10 70.5 260 26.2
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 9.2e-10 69.7 80 47.5
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 5.6e-07 60.5 456 24.1
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 1.2e-06 59.3 137 35.0


User provided reference genes

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