Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.0e-155 553.9 389 100.0
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 2.0e-98 363.6 342 84.2
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 7.2e-85 318.5 370 73.0
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 2.0e-79 300.4 368 72.6
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 2.3e-78 297.0 372 71.0
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 6.1e-76 288.9 364 71.7
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 2.3e-75 287.0 351 71.5
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.5e-74 284.3 367 71.9
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.5e-74 284.3 367 71.9
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 7.5e-74 282.0 369 68.8
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 2.2e-73 280.4 366 71.9
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.4e-72 276.9 366 69.9
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 4.1e-72 276.2 365 68.5
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 7.0e-72 275.4 368 60.6
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.3e-70 271.2 363 69.1
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 1.3e-70 271.2 364 67.9
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.3e-70 271.2 366 69.4
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.3e-70 271.2 366 70.8
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 2.9e-70 270.0 365 69.3
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 6.6e-70 268.9 362 71.3
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 6.6e-70 268.9 374 67.9
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 8.6e-70 268.5 345 70.7
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.1e-69 268.1 362 71.0
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.9e-69 267.3 362 69.1
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 2.5e-69 266.9 364 69.2
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 3.3e-69 266.5 371 67.7
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.3e-69 266.5 380 67.1
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 7.3e-69 265.4 354 70.3
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 2.1e-68 263.8 366 67.8
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 2.8e-68 263.5 364 68.4
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 3.6e-68 263.1 367 67.0
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 4.7e-68 262.7 368 68.8
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 8.0e-68 261.9 363 69.4
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 8.0e-68 261.9 367 68.4
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 1.8e-67 260.8 364 69.2
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 2.3e-67 260.4 369 68.6
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.1e-67 260.0 367 68.1
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 4.0e-67 259.6 371 56.1
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 4.0e-67 259.6 363 68.6
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 4.0e-67 259.6 365 68.2
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 8.9e-67 258.5 371 51.5
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 1.5e-66 257.7 367 52.3
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.0e-66 257.3 367 66.2
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 2.6e-66 256.9 368 66.3
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 3.4e-66 256.5 367 66.2
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 4.4e-66 256.1 367 69.2
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 4.4e-66 256.1 369 67.5
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 2.2e-65 253.8 367 68.9
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.9e-65 253.4 367 68.7
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 2.9e-65 253.4 366 65.8
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.7e-65 253.1 367 66.8
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 8.3e-65 251.9 365 67.1
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 2.4e-64 250.4 368 67.7
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 3.2e-64 250.0 394 53.8
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 3.2e-64 250.0 363 66.7
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 4.1e-64 249.6 367 65.9
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 9.2e-64 248.4 359 66.3
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 9.2e-64 248.4 350 69.4
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 1.2e-63 248.1 368 67.7
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.5e-63 246.5 368 66.3
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 1.0e-62 245.0 368 56.5
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 3.0e-62 243.4 375 63.2
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.1e-61 241.5 362 66.3
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.9e-61 240.7 365 68.2
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 2.5e-61 240.4 371 64.7
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 3.3e-61 240.0 366 66.1
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 3.6e-60 236.5 367 64.9
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 3.6e-60 236.5 366 64.8
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 3.1e-59 233.4 370 63.8
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.2e-58 231.5 367 63.5
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 5.8e-58 229.2 363 64.5
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 8.3e-57 225.3 377 63.4
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 1.9e-56 224.2 372 63.4
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.2e-55 221.5 373 54.7
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.6e-55 221.1 366 62.3
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 2.7e-55 220.3 368 61.4
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 6.0e-55 219.2 370 61.9
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 7.8e-55 218.8 378 60.6
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 7.8e-55 218.8 378 60.6
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.3e-54 218.0 374 54.3
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 1.3e-54 218.0 378 60.6
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 1.7e-54 217.6 269 77.0
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 3.0e-54 216.9 374 61.5
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 5.1e-54 216.1 369 40.7
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 8.6e-54 215.3 341 67.4
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.1e-53 214.9 378 60.1
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 4.3e-53 213.0 474 38.2
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 9.5e-53 211.8 342 68.1
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.6e-52 211.1 278 74.8
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 1.8e-51 207.6 381 59.3
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 3.1e-51 206.8 361 61.8
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 3.1e-51 206.8 361 61.5
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 5.2e-51 206.1 373 61.7
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 8.9e-51 205.3 305 67.2
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 1.2e-50 204.9 364 59.1
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 1.2e-50 204.9 379 59.9
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 7.5e-50 202.2 385 60.0
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 9.9e-50 201.8 375 61.6
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 2.2e-49 200.7 365 59.2
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 3.7e-49 199.9 378 60.3
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 1.2e-47 194.9 382 58.1
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 1.6e-47 194.5 376 58.8
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 2.1e-47 194.1 351 63.5
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 1.3e-46 191.4 304 71.1
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 5.6e-45 186.0 325 54.5
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 7.3e-45 185.7 355 56.9
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 2.2e-41 174.1 315 64.1
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 6.4e-41 172.6 128 81.2
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 6.4e-41 172.6 315 66.7
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.4e-40 171.4 353 57.5
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.1e-39 167.5 323 63.5
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 2.7e-39 167.2 328 59.8
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.3e-37 159.8 128 77.3
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.5e-34 151.4 128 75.0
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 4.4e-34 149.8 309 58.9
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 7.6e-34 149.1 359 51.0
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 9.9e-34 148.7 355 52.7
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 6.4e-33 146.0 168 55.4
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 2.1e-31 141.0 311 57.6
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 6.0e-31 139.4 302 57.6
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 7.8e-31 139.0 161 55.9
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 3.9e-30 136.7 378 51.3
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 4.5e-26 123.2 158 50.0
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 5.8e-26 122.9 172 50.6
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 5.8e-26 122.9 116 63.8
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 1.6e-23 114.8 278 57.2
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.1e-23 114.4 128 60.9
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 1.9e-21 107.8 364 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 4.3e-21 106.7 245 62.0
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 1.7e-17 94.7 399 46.6
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.8e-14 84.7 145 40.7
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.5e-13 81.6 234 51.7
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 7.4e-13 79.3 85 71.8
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 6.9e-11 72.8 55 67.3
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 6.9e-11 72.8 59 62.7
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 3.4e-10 70.5 55 65.5
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 7.6e-10 69.3 100 47.0


User provided reference genes

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