Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1916.4 971 100.0
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1395.6 965 74.6
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1291.9 1015 68.0
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1177.9 967 62.6
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1169.8 1016 63.9
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1154.4 961 62.0
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 1.1e-275 953.7 987 51.1
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 4.6e-271 938.3 978 51.2
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 4.5e-258 895.2 973 49.2
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 6.7e-254 881.3 994 47.4
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 8.4e-249 864.4 928 48.5
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 1.1e-245 854.0 926 49.7
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 4.1e-243 845.5 969 46.6
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 4.1e-235 818.9 978 44.5
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 1.8e-230 803.5 976 44.7
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 5.7e-229 798.5 988 45.2
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 9.7e-229 797.7 971 43.9
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 1.1e-227 794.3 969 45.4
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 9.1e-227 791.2 973 43.1
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 2.6e-226 789.6 988 44.8
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 1.3e-225 787.3 971 44.5
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 6.5e-225 785.0 997 44.6
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 2.7e-223 779.6 977 44.1
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 2.3e-222 776.5 974 42.5
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 3.9e-222 775.8 984 45.0
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 8.8e-222 774.6 969 44.6
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 7.4e-221 771.5 1015 43.1
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 3.7e-220 769.2 975 42.1
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 3.7e-220 769.2 992 44.7
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 6.3e-220 768.5 973 44.5
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 8.2e-220 768.1 967 43.8
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 1.4e-219 767.3 975 42.3
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 2.4e-219 766.5 995 43.9
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 5.0e-217 758.8 987 43.8
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 6.5e-217 758.4 980 43.9
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 4.2e-216 755.7 973 43.2
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 4.7e-215 752.3 983 42.6
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 2.3e-214 750.0 969 41.8
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 7.5e-213 745.0 976 42.6
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 6.3e-212 741.9 983 43.5
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 6.3e-212 741.9 976 43.4
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 3.1e-211 739.6 972 42.4
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 1.2e-210 737.6 979 42.9
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 5.9e-210 735.3 971 42.0
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 1.0e-209 734.6 977 42.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 5.0e-209 732.3 971 41.4
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 1.5e-208 730.7 982 43.4
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 5.5e-208 728.8 977 42.6
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 7.2e-208 728.4 977 41.8
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 2.1e-207 726.9 975 40.5
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 2.7e-207 726.5 975 40.2
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 3.0e-206 723.0 974 42.0
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 3.0e-206 723.0 986 41.0
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 8.8e-206 721.5 992 41.0
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 1.2e-205 721.1 977 40.8
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 4.4e-205 719.2 975 40.6
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 8.3e-204 714.9 978 40.8
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 8.3e-204 714.9 978 40.8
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 1.1e-203 714.5 881 44.6
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 3.5e-202 709.5 977 40.9
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 7.2e-200 701.8 983 40.6
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 6.8e-198 695.3 969 42.4
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 5.7e-197 692.2 1093 39.8
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.7e-196 689.5 659 52.8
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 1.5e-192 677.6 998 39.0
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 2.1e-191 673.7 987 40.0
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 7.3e-184 648.7 981 37.1
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 9.5e-184 648.3 972 36.9
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 9.5e-184 648.3 972 38.6
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 2.1e-183 647.1 977 36.9
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 1.1e-182 644.8 972 36.4
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 3.1e-182 643.3 969 36.6
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 8.9e-182 641.7 600 53.8
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 1.7e-180 637.5 718 45.8
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 1.4e-179 634.4 969 36.6
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 5.4e-179 632.5 972 36.6
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 6.6e-177 625.5 983 36.4
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 1.1e-176 624.8 974 36.2
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 1.5e-176 624.4 976 37.0
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 5.2e-174 615.9 1001 35.5
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 1.5e-173 614.4 1001 35.3
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 1.9e-171 607.4 976 36.9
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 3.1e-166 590.1 673 46.2
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 7.6e-165 585.5 983 36.0
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 1.7e-164 584.3 998 37.4
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 5.4e-163 579.3 1234 31.6
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 6.9e-158 562.4 630 46.8
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.2e-154 551.6 973 34.2
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 5.8e-149 532.7 713 39.1
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 1.1e-147 528.5 513 51.3
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 7.1e-147 525.8 653 45.0
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 7.1e-147 525.8 979 34.4
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.2e-146 525.0 529 51.8
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 2.5e-144 517.3 980 34.5
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 7.6e-141 505.8 978 34.2
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 2.9e-140 503.8 978 33.9
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 2.8e-135 487.3 585 45.3
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 2.9e-132 477.2 531 47.8
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 3.2e-115 420.6 1075 30.2
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 2.9e-108 397.5 413 51.1
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 2.1e-106 391.3 566 38.7
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 3.2e-99 367.5 902 29.5
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 5.0e-92 343.6 500 38.4
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 7.2e-91 339.7 508 36.2
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 9.4e-91 339.3 901 28.7
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 1.0e-84 319.3 893 27.8
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 4.9e-79 300.4 451 37.5
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.4e-73 282.3 309 46.0
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.8e-66 258.1 569 30.9
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 2.6e-64 251.5 382 36.9
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.8e-64 250.4 318 40.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.1e-62 246.1 828 25.8
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 2.4e-62 245.0 444 34.9
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.4e-62 243.8 359 37.3
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 7.1e-54 216.9 501 31.7
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.2e-50 206.1 321 37.7
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 4.7e-50 204.1 245 44.9
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 6.2e-50 203.8 856 23.9
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 2.4e-49 201.8 228 47.4
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 2.4e-49 201.8 341 37.2
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 8.9e-49 199.9 208 50.0
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 6.4e-47 193.7 382 31.7
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.3e-44 186.0 448 33.0
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.6e-42 177.9 218 45.9
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.1e-41 176.4 287 38.7
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.6e-35 154.1 311 31.8
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.8e-33 149.1 195 42.1
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.1e-30 139.8 227 36.6
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 4.2e-30 137.9 184 41.8
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 2.7e-29 135.2 122 50.8
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 3.5e-29 134.8 184 41.3
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 3.3e-27 128.3 183 37.7
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 6.9e-25 120.6 147 41.5
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 7.9e-21 107.1 208 34.1
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.9e-21 107.1 142 39.4
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.1e-17 96.7 90 52.2
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 3.0e-12 78.6 95 45.3
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 1.5e-11 76.3 95 44.2
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 8.2e-10 70.5 258 25.2
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.3e-07 63.2 51 56.9


User provided reference genes

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