Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G1718 Erigeron canadensis HOM05D003157 ORTHO05D012168 4.8e-144 514.6 286 100.0
ECA232G3241 Erigeron canadensis HOM05D003157 ORTHO05D004447 7.5e-28 128.6 107 65.4
HanXRQChr10g0296081 Helianthus annuus HOM05D003157 ORTHO05D004447 9.7e-28 128.3 123 59.3
HanXRQChr16g0504701 Helianthus annuus HOM05D003157 ORTHO05D004447 2.2e-24 117.1 109 59.6
Lsat_1_v5_gn_4_77240 Lactuca sativa HOM05D003157 ORTHO05D004447 1.9e-23 114.0 123 52.8
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 1.5e-20 104.4 92 58.7
Oeu040857.2 Olea europaea HOM05D003157 ORTHO05D004447 2.6e-20 103.6 153 42.5
ECA232G3078 Erigeron canadensis HOM05D000048 ORTHO05D002613 9.8e-20 101.7 102 53.9
PGSC0003DMG400018122 Solanum tuberosum HOM05D003157 ORTHO05D004447 2.8e-19 100.1 110 52.7
Lsat_1_v5_gn_8_1421 Lactuca sativa HOM05D003157 ORTHO05D012168 3.7e-19 99.8 75 66.7
Solyc03g112230.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 8.3e-19 98.6 110 53.6
Sopen06g028060 Solanum pennellii HOM05D003157 ORTHO05D004447 8.3e-19 98.6 91 58.2
Cc04_g11550 Coffea canephora HOM05D003157 ORTHO05D004447 3.1e-18 96.7 101 51.5
Sopen03g031330 Solanum pennellii HOM05D003157 ORTHO05D004447 5.4e-18 95.9 110 52.7
Solyc06g071770.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 9.1e-18 95.1 91 57.1
CAN.G338.32 Capsicum annuum HOM05D003157 ORTHO05D004447 1.2e-17 94.7 98 53.1
DCAR_016024 Daucus carota HOM05D003157 ORTHO05D004447 1.2e-17 94.7 101 50.5
CSS0041144 Camellia sinensis var. sinensis HOM05D003157 ORTHO05D004447 2.0e-17 94.0 100 51.0
DCAR_026172 Daucus carota HOM05D003157 ORTHO05D004447 2.0e-17 94.0 99 52.5
Rhsim08G0177500 Rhododendron simsii HOM05D003157 ORTHO05D004447 2.0e-17 94.0 99 56.6
Peaxi162Scf00089g01334 Petunia axillaris HOM05D003157 ORTHO05D004447 2.7e-17 93.6 110 47.3
Dinv20600 Davidia involucrata HOM05D003157 ORTHO05D004447 3.5e-17 93.2 100 54.0
Lj5A130T68 Lonicera japonica HOM05D003157 ORTHO05D004447 3.5e-17 93.2 99 49.5
Nitab4.5_0001793g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 5.9e-17 92.4 110 49.1
Nitab4.5_0010452g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 5.9e-17 92.4 110 49.1
PGSC0003DMG400027073 Solanum tuberosum HOM05D003157 ORTHO05D004447 7.7e-17 92.0 91 54.9
CAN.G993.20 Capsicum annuum HOM05D003157 ORTHO05D004447 1.0e-16 91.7 91 54.9
MSTRG.11494 Avicennia marina HOM05D003157 ORTHO05D004447 1.7e-16 90.9 96 51.0
vmacro19300 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 2.9e-16 90.1 97 52.6
Actinidia08960 Actinidia chinensis HOM05D003157 ORTHO05D004447 5.0e-16 89.4 100 49.0
Potri.012G085700 Populus trichocarpa HOM05D003157 ORTHO05D004447 5.0e-16 89.4 100 50.0
CiPaw.11G019800 Carya illinoinensis HOM05D003157 ORTHO05D004447 6.5e-16 89.0 100 51.0
Thecc.03G025700 Theobroma cacao HOM05D003157 ORTHO05D004447 8.5e-16 88.6 101 51.5
vmacro16645 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 8.5e-16 88.6 109 48.6
QL10p006899 Quercus lobata HOM05D003157 ORTHO05D004447 1.9e-15 87.4 100 52.0
Rhsim12G0167900 Rhododendron simsii HOM05D003157 ORTHO05D004447 2.5e-15 87.0 108 46.3
Hund02785 Selenicereus undatus HOM05D003157 ORTHO05D004447 2.5e-15 87.0 109 46.8
Cfa019214 Carpinus fangiana HOM05D003157 ORTHO05D004447 3.2e-15 86.7 112 43.8
Nitab4.5_0008713g0020 Nicotiana tabacum HOM05D003157 ORTHO05D004447 4.2e-15 86.3 100 48.0
ClCG01G013500 Citrullus lanatus HOM05D003157 ORTHO05D004447 5.5e-15 85.9 97 51.5
SalBow6G1229 Salvia bowleyana HOM05D003157 ORTHO05D004447 5.5e-15 85.9 106 46.2
Manes.06G110100 Manihot esculenta HOM05D003157 ORTHO05D004447 7.2e-15 85.5 110 44.5
Oeu020884.3 Olea europaea HOM05D003157 ORTHO05D004447 7.2e-15 85.5 105 46.7
Potri.015G084000 Populus trichocarpa HOM05D003157 ORTHO05D004447 7.2e-15 85.5 100 48.0
SGA_v2.0_scaffold114G31812 Striga asiatica HOM05D003157 ORTHO05D004447 7.2e-15 85.5 96 46.9
Peaxi162Scf00763g00430 Petunia axillaris HOM05D003157 ORTHO05D004447 9.5e-15 85.1 99 50.5
Actinidia08033 Actinidia chinensis HOM05D000048 ORTHO05D004447 1.2e-14 84.7 100 47.0
Actinidia24597 Actinidia chinensis HOM05D003157 ORTHO05D004447 1.2e-14 84.7 100 47.0
Sc12g0005010 Simmondsia chinensis HOM05D003157 ORTHO05D004447 1.2e-14 84.7 101 48.5
MSTRG.9691 Avicennia marina HOM05D003157 ORTHO05D004447 1.6e-14 84.3 123 41.5
Sabra15G0107200 Salix brachista HOM05D003157 ORTHO05D004447 1.6e-14 84.3 100 48.0
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 2.1e-14 84.0 102 47.1
ClCG03G002990 Citrullus lanatus HOM05D003157 ORTHO05D004447 2.8e-14 83.6 78 57.7
Haze_07584 Corylus avellana HOM05D003157 ORTHO05D004447 2.8e-14 83.6 110 43.6
Migut.D01995 Erythranthe guttata HOM05D003157 ORTHO05D004447 2.8e-14 83.6 111 43.2
A08p21390 Brassica napus HOM05D003157 ORTHO05D004447 3.6e-14 83.2 157 38.2
BraA08t34089Z Brassica rapa HOM05D003157 ORTHO05D004447 3.6e-14 83.2 157 38.9
Sed0026079 Sechium edule HOM05D003157 ORTHO05D004447 4.7e-14 82.8 100 48.0
TWI23G0818 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 4.7e-14 82.8 100 50.0
Ciclev10024152m.g Citrus clementina HOM05D003157 ORTHO05D004447 6.1e-14 82.4 100 48.0
Eucgr.K02800 Eucalyptus grandis HOM05D003157 ORTHO05D004447 6.1e-14 82.4 113 45.1
Ca_14277_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 8.0e-14 82.0 108 43.5
MD14G1171800 Malus domestica HOM05D003157 ORTHO05D004447 8.0e-14 82.0 100 49.0
Nitab4.5_0000003g0820 Nicotiana tabacum HOM05D003157 ORTHO05D004447 8.0e-14 82.0 99 46.5
TAR629G0508 Trochodendron aralioides HOM05D003157 ORTHO05D004447 1.0e-13 81.6 101 48.5
Cpa.g.sc159.27 Carica papaya HOM05D003157 ORTHO05D004447 1.4e-13 81.3 110 46.4
Medtr4g104880 Medicago truncatula HOM05D003157 ORTHO05D004447 1.4e-13 81.3 101 41.6
Prupe.5G165800 Prunus persica HOM05D003157 ORTHO05D004447 1.4e-13 81.3 108 45.4
Sabra12G0061600 Salix brachista HOM05D003157 ORTHO05D004447 1.8e-13 80.9 100 47.0
Phvul.003G205000 Phaseolus vulgaris HOM05D003157 ORTHO05D004447 2.3e-13 80.5 129 41.9
Gohir.A03G056900 Gossypium hirsutum HOM05D003157 ORTHO05D004447 3.0e-13 80.1 101 48.5
MD06G1165900 Malus domestica HOM05D003157 ORTHO05D004447 3.0e-13 80.1 97 47.4
CARHR232070 Cardamine hirsuta HOM05D003157 ORTHO05D004447 4.0e-13 79.7 129 43.4
Gohir.A11G040300 Gossypium hirsutum HOM05D003157 ORTHO05D004447 4.0e-13 79.7 106 48.1
Manes.14G060700 Manihot esculenta HOM05D003157 ORTHO05D004447 4.0e-13 79.7 100 45.0
unitig_37.g12746 Utricularia gibba HOM05D003157 ORTHO05D004447 4.0e-13 79.7 90 47.8
CsaV3_1G008830 Cucumis sativus L. HOM05D003157 ORTHO05D004447 5.2e-13 79.3 109 44.0
COL.COLO4_24272 Corchorus olitorius HOM05D003157 ORTHO05D004447 6.8e-13 79.0 78 50.0
VMungo1215G0567 Vigna mungo HOM05D003157 ORTHO05D004447 6.8e-13 79.0 130 40.0
BcaB03g12442 Brassica carinata HOM05D003157 ORTHO05D004447 1.2e-12 78.2 106 45.3
MELO3C002297.2 Cucumis melo HOM05D003157 ORTHO05D004447 1.2e-12 78.2 83 49.4
Glyma.05G041600 Glycine max HOM05D003157 ORTHO05D004447 1.2e-12 78.2 136 39.7
Gohir.D03G106700 Gossypium hirsutum HOM05D003157 ORTHO05D004447 1.2e-12 78.2 101 48.5
Gorai.003G115800 Gossypium raimondii HOM05D003157 ORTHO05D004447 1.2e-12 78.2 101 48.5
Gorai.007G046900 Gossypium raimondii HOM05D003157 ORTHO05D004447 1.2e-12 78.2 105 47.6
Lalb_Chr13g0297581 Lupinus albus HOM05D003157 ORTHO05D004447 1.2e-12 78.2 111 43.2
PGR044G1972 Punica granatum HOM05D003157 ORTHO05D004447 1.2e-12 78.2 100 46.0
SGA_v2.0_scaffold7G04161 Striga asiatica HOM05D003157 ORTHO05D004447 1.2e-12 78.2 77 49.4
TAR371G0612 Trochodendron aralioides HOM05D003157 ORTHO05D004447 1.2e-12 78.2 100 47.0
CANSAT80G2678 Cannabis sativa HOM05D003157 ORTHO05D004447 1.5e-12 77.8 101 45.5
FAN04G1965 Fragaria x ananassa HOM05D003157 ORTHO05D004447 1.5e-12 77.8 110 42.7
Gohir.D11G043500 Gossypium hirsutum HOM05D003157 ORTHO05D004447 1.5e-12 77.8 101 47.5
Sed0005003 Sechium edule HOM05D003157 ORTHO05D004447 1.5e-12 77.8 97 49.5
GSVIVG01007647001 Vitis vinifera HOM05D003157 ORTHO05D004447 1.5e-12 77.8 107 46.7
Carub.0007s1637 Capsella rubella HOM05D003157 ORTHO05D004447 2.0e-12 77.4 129 42.6
Glyma.17G084700 Glycine max HOM05D003157 ORTHO05D004447 2.0e-12 77.4 97 43.3
Migut.O00156 Erythranthe guttata HOM05D003157 ORTHO05D004447 2.6e-12 77.0 78 51.3
FvH4_5g06270 Fragaria vesca HOM05D003157 ORTHO05D004447 2.6e-12 77.0 110 40.9
TWI14G1342 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 3.4e-12 76.6 100 47.0
arahy.Tifrunner.gnm1.ann1.UDW2C6 Arachis hypogaea HOM05D003157 ORTHO05D004447 5.7e-12 75.9 90 44.4
AUR62028729 Chenopodium quinoa HOM05D003157 ORTHO05D004447 5.7e-12 75.9 77 49.4
Psat4g060880 Pisum sativum HOM05D003157 ORTHO05D004447 5.7e-12 75.9 98 41.8
arahy.Tifrunner.gnm1.ann1.RZMV9E Arachis hypogaea HOM05D003157 ORTHO05D004447 7.5e-12 75.5 90 45.6
CDE02G1794 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 9.8e-12 75.1 125 36.8
EL10Ac5g10658 Beta vulgaris HOM05D003157 ORTHO05D004447 1.3e-11 74.7 106 46.2
CiPaw.11G020300 Carya illinoinensis HOM05D003157 ORTHO05D012168 1.3e-11 74.7 128 37.5
CDE04G2303 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 1.7e-11 74.3 80 47.5
Lj4g0014353 Lotus japonicus HOM05D003157 ORTHO05D004447 1.7e-11 74.3 82 45.1
Os04g0476800 Oryza sativa ssp. japonica HOM05D003157 ORTHO05D004447 1.7e-11 74.3 78 51.3
RcHm_v2.0_Chr7g0192591 Rosa chinensis HOM05D003157 ORTHO05D004447 2.2e-11 73.9 100 43.0
THA.LOC104809775 Tarenaya hassleriana HOM05D003157 ORTHO05D004447 2.2e-11 73.9 125 36.8
TPR.G37494 Trifolium pratense HOM05D003157 ORTHO05D004447 2.2e-11 73.9 138 33.3
ATR0824G119 Amborella trichopoda HOM05D003157 ORTHO05D004447 2.8e-11 73.6 80 47.5
AT4G24690 Arabidopsis thaliana HOM05D003157 ORTHO05D004447 3.7e-11 73.2 127 38.6
Lsat_1_v5_gn_1_27780 Lactuca sativa HOM05D003157 ORTHO05D004447 4.9e-11 72.8 120 39.2
Lj9A442T64 Lonicera japonica HOM05D003157 ORTHO05D004447 4.9e-11 72.8 73 53.4
Zm00001eb245950 Zea mays HOM05D003157 ORTHO05D004447 4.9e-11 72.8 94 43.6
FAN08G1011 Fragaria x ananassa HOM05D003157 ORTHO05D004447 6.3e-11 72.4 110 40.9
DCAR_021588 Daucus carota HOM05D003157 ORTHO05D004447 8.3e-11 72.0 130 39.2
FAN13G0746 Fragaria x ananassa HOM05D003157 ORTHO05D004447 8.3e-11 72.0 110 40.0
BcaC07g38161 Brassica carinata HOM05D003157 ORTHO05D004447 1.1e-10 71.6 166 33.7
Os02g0593700 Oryza sativa ssp. japonica HOM05D003157 ORTHO05D004447 1.1e-10 71.6 93 44.1
AUR62008147 Chenopodium quinoa HOM05D003157 ORTHO05D004447 1.4e-10 71.2 77 48.1
Lalb_Chr07g0182971 Lupinus albus HOM05D003157 ORTHO05D004447 1.4e-10 71.2 110 44.5
Zm00001eb079700 Zea mays HOM05D003157 ORTHO05D004447 1.4e-10 71.2 82 46.3
AL7G28510 Arabidopsis lyrata HOM05D003157 ORTHO05D004447 5.4e-10 69.3 132 39.4
PSO754G0123 Papaver somniferum HOM05D003157 ORTHO05D004447 7.0e-10 68.9 96 44.8
SHI17273 Sapria himalayana HOM05D003157 ORTHO05D004447 7.0e-10 68.9 105 42.9
Migut.O00157 Erythranthe guttata HOM05D003157 ORTHO05D004447 9.2e-10 68.6 82 47.6
BolC8t48585H Brassica oleracea HOM05D003157 ORTHO05D004447 1.2e-09 68.2 170 32.9
PSO111G0086 Papaver somniferum HOM05D003157 ORTHO05D004447 1.6e-09 67.8 110 38.2
Sp7g22680 Schrenkiella parvula HOM05D003157 ORTHO05D004447 2.0e-09 67.4 128 38.3
Ah.11g051160 Amaranthus hybridus HOM05D003157 ORTHO05D004447 2.7e-09 67.0 82 45.1
C01p20020 Brassica napus HOM05D003157 ORTHO05D004447 2.7e-09 67.0 129 38.8
BcaC09g50840 Brassica carinata HOM05D003157 ORTHO05D004447 3.5e-09 66.6 129 38.8
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 3.5e-09 66.6 130 38.5
BolC7t45866H Brassica oleracea HOM05D003157 ORTHO05D004447 3.5e-09 66.6 130 38.5
BraA01t01537Z Brassica rapa HOM05D003157 ORTHO05D004447 3.5e-09 66.6 129 38.8
Medtr4g104960 Medicago truncatula HOM05D003157 ORTHO05D012168 4.5e-09 66.2 77 40.3
Medtr4g104980 Medicago truncatula HOM05D003157 ORTHO05D012168 4.5e-09 66.2 75 45.3
Aa31LG4G9790 Aethionema arabicum HOM05D003157 ORTHO05D004447 5.9e-09 65.9 124 34.7
Aqoxy3G01217 Aquilegia oxysepala HOM05D003157 ORTHO05D004447 5.9e-09 65.9 78 47.4
Thhalv10024557m.g Eutrema salsugineum HOM05D003157 ORTHO05D004447 7.8e-09 65.5 130 36.9
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 1.0e-08 65.1 125 37.6
BolC1t01929H Brassica oleracea HOM05D003157 ORTHO05D004447 1.0e-08 65.1 129 38.0
A01p16030 Brassica napus HOM05D003157 ORTHO05D004447 1.3e-08 64.7 129 38.0
Lalb_Chr12g0201891 Lupinus albus HOM05D003157 ORTHO05D004447 1.3e-08 64.7 88 44.3
Medtr4g104890 Medicago truncatula HOM05D003157 ORTHO05D012168 1.3e-08 64.7 81 42.0
Aqoxy3G03011 Aquilegia oxysepala HOM05D003157 ORTHO05D012168 1.7e-08 64.3 87 44.8
SEGI_11452 Sequoiadendron giganteum HOM05D003157 ORTHO05D004447 2.9e-08 63.5 108 35.2
Dinv15230 Davidia involucrata HOM05D003157 ORTHO05D004447 3.8e-08 63.2 61 54.1
Prupe.5G165900 Prunus persica HOM05D003157 ORTHO05D012168 3.8e-08 63.2 89 41.6
TPR.G37497 Trifolium pratense HOM05D003157 ORTHO05D012168 3.8e-08 63.2 88 38.6
FAN18G2672 Fragaria x ananassa HOM05D003157 ORTHO05D004447 5.0e-08 62.8 83 42.2
SEGI_31497 Sequoiadendron giganteum HOM05D003157 ORTHO05D012168 6.6e-08 62.4 78 42.3
HPP92_006279 Vanilla planifolia HOM05D003157 ORTHO05D004447 6.6e-08 62.4 92 41.3
Nn3g16701 Nelumbo nucifera HOM05D003157 ORTHO05D004447 8.6e-08 62.0 101 38.6
TPR.G37470 Trifolium pratense HOM05D003157 ORTHO05D004447 1.1e-07 61.6 76 38.2
Medtr4g104940 Medicago truncatula HOM05D003157 ORTHO05D012168 1.9e-07 60.8 77 39.0
A03p55470 Brassica napus HOM05D003157 ORTHO05D004447 2.5e-07 60.5 81 45.7
BraA03t14620Z Brassica rapa HOM05D003157 ORTHO05D004447 2.5e-07 60.5 81 45.7
Rhsim10G0015600 Rhododendron simsii HOM05D001812 ORTHO05D001874 2.5e-07 60.5 110 36.4
HPP92_024706 Vanilla planifolia HOM05D003157 ORTHO05D004447 2.5e-07 60.5 80 42.5
MD06G1166000 Malus domestica HOM05D003157 ORTHO05D012168 4.3e-07 59.7 78 42.3
Medtr4g104990 Medicago truncatula HOM05D003157 ORTHO05D012168 5.6e-07 59.3 79 40.5
MBI18_g17021_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.2e-06 58.2 60 51.7
Medtr4g104950 Medicago truncatula HOM05D003157 ORTHO05D012168 1.6e-06 57.8 58 48.3
Zm00001eb127620 Zea mays HOM05D003157 ORTHO05D037866 1.6e-06 57.8 60 48.3
Medtr4g104900 Medicago truncatula HOM05D003157 ORTHO05D012168 2.1e-06 57.4 76 36.8
Psat4g060960 Pisum sativum HOM05D003157 ORTHO05D012168 4.7e-06 56.2 76 38.2
Zm00001eb386700 Zea mays HOM05D003157 ORTHO05D037866 4.7e-06 56.2 60 46.7
Ca_03503_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 6.1e-06 55.8 67 46.3
Zm00001eb386690 Zea mays HOM05D003157 ORTHO05D037866 8.0e-06 55.5 60 46.7


User provided reference genes

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