Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 0.0e+00 1181.0 603 100.0
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 0.0e+00 1100.9 601 93.5
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 0.0e+00 1083.6 599 92.0
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 0.0e+00 1083.2 601 90.7
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 0.0e+00 1082.0 601 90.7
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 0.0e+00 1076.6 601 90.2
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 7.2e-307 1056.6 588 90.8
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 4.3e-251 871.3 606 72.9
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 5.6e-243 844.3 605 70.2
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 3.6e-242 841.6 603 70.5
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.1e-241 840.1 603 70.1
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 7.6e-240 833.9 616 70.1
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 2.2e-239 832.4 598 69.4
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 2.2e-239 832.4 600 69.2
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 2.9e-239 832.0 596 69.8
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 3.8e-239 831.6 600 69.0
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 5.4e-238 827.8 607 69.2
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 2.3e-236 822.4 598 70.1
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.1e-235 820.1 601 68.4
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 1.1e-235 820.1 605 68.9
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.5e-235 819.7 590 68.8
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 4.3e-235 818.1 596 68.6
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 5.6e-235 817.8 597 67.5
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 1.6e-234 816.2 592 69.1
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 2.1e-234 815.8 599 67.6
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.0e-233 811.6 594 68.0
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 5.3e-233 811.2 603 67.8
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 6.9e-233 810.8 600 67.8
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 2.0e-232 809.3 588 68.7
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 9.9e-232 807.0 604 66.7
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 2.9e-231 805.4 597 67.2
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 3.8e-231 805.1 602 68.8
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 3.8e-231 805.1 605 68.6
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 8.4e-231 803.9 599 67.3
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 1.1e-230 803.5 591 68.0
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.9e-230 802.7 602 68.1
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 5.4e-230 801.2 619 65.8
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 9.3e-230 800.4 605 67.6
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.2e-229 800.0 590 67.5
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 7.9e-229 797.3 595 67.6
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 1.3e-228 796.6 595 67.6
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.3e-228 795.8 589 67.6
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 3.0e-228 795.4 591 67.3
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 3.9e-228 795.0 604 68.0
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 6.7e-228 794.3 608 66.3
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 1.1e-227 793.5 591 67.3
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 3.3e-227 792.0 633 64.3
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 4.3e-227 791.6 595 68.1
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 5.6e-227 791.2 590 66.8
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 7.4e-227 790.8 595 67.2
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 9.6e-227 790.4 608 67.3
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 1.6e-226 789.6 559 69.6
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 2.1e-226 789.3 590 66.9
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.8e-226 788.1 628 64.2
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 6.2e-226 787.7 597 65.8
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 8.1e-226 787.3 603 67.0
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.5e-224 781.6 597 64.5
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 7.1e-222 774.2 602 65.1
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.0e-220 770.4 592 66.0
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.9e-220 768.5 604 64.2
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.1e-219 766.9 580 67.6
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.5e-219 766.5 603 64.3
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 7.4e-219 764.2 601 65.1
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 2.8e-218 762.3 603 63.3
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 4.8e-218 761.5 601 64.1
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 6.9e-217 757.7 626 61.7
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.2e-216 756.9 590 64.2
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 2.6e-216 755.7 604 62.6
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 2.2e-215 752.7 600 64.2
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 3.8e-215 751.9 593 64.2
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 1.1e-214 750.4 549 67.9
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 2.5e-214 749.2 600 64.2
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 7.1e-214 747.7 591 63.8
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 4.6e-213 745.0 599 63.3
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 6.0e-213 744.6 541 68.9
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 6.0e-213 744.6 593 63.9
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 1.0e-212 743.8 597 63.0
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 1.9e-211 739.6 606 63.9
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 4.3e-211 738.4 597 63.3
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 8.2e-210 734.2 596 62.9
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 4.1e-209 731.9 601 63.4
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.2e-208 730.3 601 63.2
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 1.2e-208 730.3 597 63.3
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 3.8e-207 725.3 586 62.5
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 6.5e-207 724.5 599 61.8
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 2.5e-206 722.6 598 62.7
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 2.5e-206 722.6 583 62.8
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 4.2e-206 721.8 607 61.8
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.6e-205 719.9 614 60.4
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.6e-205 719.9 598 64.4
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 3.6e-205 718.8 599 61.9
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 7.9e-205 717.6 592 63.3
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.4e-204 716.8 597 62.0
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 2.3e-204 716.1 599 61.3
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 5.1e-204 714.9 588 62.4
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 4.3e-203 711.8 606 60.4
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 8.2e-202 707.6 592 62.8
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.8e-201 706.4 598 62.5
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 3.1e-201 705.7 592 62.7
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 1.2e-200 703.7 598 62.2
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.2e-200 703.7 598 62.2
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.8e-199 698.7 515 66.6
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 8.5e-199 697.6 598 61.4
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 1.6e-197 693.3 604 60.4
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 2.7e-197 692.6 604 59.4
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 6.1e-197 691.4 598 61.5
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 5.1e-196 688.3 593 61.2
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 3.3e-195 685.6 597 60.6
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.6e-192 676.0 588 61.1
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 3.6e-189 665.6 524 64.3
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 3.0e-188 662.5 573 59.0
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 1.1e-187 660.6 597 58.0
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 9.7e-187 657.5 595 57.8
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 3.7e-186 655.6 593 60.2
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 5.9e-184 648.3 596 58.2
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.4e-180 637.1 593 58.0
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 9.1e-177 624.4 598 55.0
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 5.4e-169 598.6 591 55.3
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 3.5e-168 595.9 603 52.1
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 5.0e-167 592.0 595 54.1
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 7.5e-163 578.2 610 51.3
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 5.9e-160 568.5 623 49.9
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 5.2e-156 555.4 466 62.9
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.1e-148 529.6 433 62.6
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 4.0e-148 529.3 604 48.3
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 5.4e-137 492.3 601 46.8
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 3.6e-133 479.6 393 64.6
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 2.7e-120 436.8 628 40.0
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 8.7e-119 431.8 503 49.1
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 2.5e-118 430.3 453 47.7
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.6e-118 429.1 317 67.8
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 8.1e-117 425.2 319 65.8
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 9.6e-110 401.7 356 60.4
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 7.6e-107 392.1 609 40.4
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.1e-102 378.3 353 57.5
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 1.2e-83 315.1 323 52.0
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 3.9e-79 300.1 655 32.5
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.1e-78 298.5 532 36.8
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 2.0e-67 261.2 228 61.8
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 2.0e-67 261.2 183 72.7
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 2.3e-63 247.7 223 57.0
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.7e-61 240.4 122 96.7
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.4e-54 217.2 165 63.6
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.1e-52 212.2 113 93.8
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.4e-52 211.8 113 92.9
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 2.0e-51 208.0 370 39.5
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.9e-50 204.1 136 66.2
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 1.1e-36 159.1 120 66.7
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 1.1e-33 149.1 128 63.3
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.8e-32 144.4 179 50.3
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 8.9e-31 139.4 206 43.7
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 6.0e-27 126.7 80 73.8
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.6e-26 122.9 91 63.7
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.1e-25 122.5 79 65.8
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.5e-25 121.3 91 62.6
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 5.8e-22 110.2 123 52.0
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 1.3e-21 109.0 82 67.1
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 2.5e-17 94.7 106 54.7
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 1.2e-16 92.4 65 69.2
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 4.0e-15 87.4 136 39.7
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 3.4e-14 84.3 56 66.1
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 1.3e-13 82.4 70 60.0
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.1e-12 79.3 38 100.0
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 4.8e-08 63.9 34 85.3
Sc03g0007490 Simmondsia chinensis HOM05D004159 ORTHO05D388831 8.1e-08 63.2 100 44.0
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 1.1e-07 62.8 51 56.9
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 1.2e-06 59.3 40 67.5
Gohir.D03G083350 Gossypium hirsutum HOM05D000251 ORTHO05D018866 7.6e-06 56.6 32 87.5


User provided reference genes

Program Settings