Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 1.7e-137 492.7 246 100.0
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 1.2e-74 283.9 465 41.9
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 5.0e-73 278.5 465 41.5
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.5e-72 276.9 465 41.3
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.5e-72 276.2 465 41.1
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.1e-67 260.8 485 38.4
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 9.5e-64 247.7 231 62.3
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 2.1e-63 246.5 465 37.2
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 8.0e-63 244.6 467 37.5
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 1.4e-62 243.8 460 37.8
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 3.0e-62 242.7 465 35.9
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 2.0e-61 240.0 473 37.0
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 3.4e-61 239.2 466 36.9
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 5.7e-61 238.4 467 36.6
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 9.8e-61 237.7 467 36.0
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 2.2e-60 236.5 466 36.7
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 6.4e-60 235.0 466 35.4
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 1.4e-59 233.8 467 36.2
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 5.4e-59 231.9 467 35.5
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 9.2e-59 231.1 466 35.6
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.6e-58 230.3 467 35.5
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 1.6e-58 230.3 467 35.3
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 2.0e-58 229.9 467 35.3
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 3.5e-58 229.2 477 35.2
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 5.9e-58 228.4 466 36.1
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 5.0e-57 225.3 474 34.2
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 5.0e-57 225.3 471 34.8
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 8.6e-57 224.6 467 34.3
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 1.1e-56 224.2 466 34.8
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.5e-56 223.8 516 33.5
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 1.9e-56 223.4 477 34.4
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 5.6e-56 221.9 247 54.3
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 5.6e-56 221.9 463 34.6
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 5.6e-56 221.9 477 34.6
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 9.5e-56 221.1 444 36.5
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 9.5e-56 221.1 463 34.1
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 1.2e-55 220.7 472 34.3
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.6e-55 220.3 444 36.5
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 1.6e-55 220.3 476 34.5
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.1e-55 219.9 231 55.4
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 2.1e-55 219.9 223 56.1
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 2.8e-55 219.5 462 34.4
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 3.6e-55 219.2 475 34.3
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 3.6e-55 219.2 466 35.2
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 4.7e-55 218.8 490 33.5
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 8.0e-55 218.0 466 33.9
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 8.0e-55 218.0 467 34.3
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 8.0e-55 218.0 466 33.9
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 8.0e-55 218.0 467 34.5
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 1.0e-54 217.6 467 34.0
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 1.0e-54 217.6 466 34.1
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 1.0e-54 217.6 469 33.7
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 1.8e-54 216.9 481 34.1
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.3e-54 216.5 252 50.8
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 2.3e-54 216.5 473 34.0
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 2.3e-54 216.5 467 34.7
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 4.0e-54 215.7 477 33.3
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 4.0e-54 215.7 477 33.3
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 5.2e-54 215.3 227 55.1
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 6.8e-54 214.9 477 33.3
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 6.8e-54 214.9 482 34.2
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 3.4e-53 212.6 466 33.3
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 3.4e-53 212.6 466 34.3
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 7.5e-53 211.5 466 33.5
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 9.8e-53 211.1 466 34.1
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 9.8e-53 211.1 466 34.1
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.3e-52 210.7 467 34.3
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 1.7e-52 210.3 223 53.8
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 1.7e-52 210.3 223 53.8
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 2.9e-52 209.5 227 52.9
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 4.9e-52 208.8 494 32.4
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 4.9e-52 208.8 477 33.5
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 8.3e-52 208.0 475 32.0
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 1.1e-51 207.6 230 53.0
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.1e-51 207.6 469 34.3
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 1.1e-51 207.6 241 49.8
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.4e-51 207.2 227 53.7
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 1.4e-51 207.2 223 52.5
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 2.4e-51 206.5 433 34.9
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.2e-51 206.1 236 52.5
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 4.1e-51 205.7 473 32.8
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 4.1e-51 205.7 227 52.9
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 5.4e-51 205.3 474 34.0
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 7.0e-51 204.9 252 49.2
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 7.0e-51 204.9 467 34.3
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 9.2e-51 204.5 467 33.4
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 1.2e-50 204.1 227 52.0
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.2e-50 204.1 477 33.8
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 1.2e-50 204.1 223 52.0
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 2.0e-50 203.4 466 33.3
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 3.5e-50 202.6 230 52.6
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 4.6e-50 202.2 463 33.3
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 6.0e-50 201.8 231 51.5
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.0e-49 201.1 231 51.9
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 1.0e-49 201.1 466 32.8
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.7e-49 200.3 228 51.8
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 5.0e-49 198.7 466 33.3
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 5.0e-49 198.7 463 33.0
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 6.6e-49 198.4 467 33.0
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 6.6e-49 198.4 467 33.0
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 1.5e-48 197.2 231 49.4
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 1.9e-48 196.8 467 32.8
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 1.9e-48 196.8 223 51.1
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 7.3e-48 194.9 467 32.8
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 7.3e-48 194.9 227 49.3
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 7.3e-48 194.9 463 32.4
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 4.7e-47 192.2 231 48.1
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 6.2e-47 191.8 224 49.6
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 2.3e-46 189.9 231 48.1
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 6.8e-46 188.3 224 51.8
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 6.8e-46 188.3 398 35.2
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.4e-43 180.6 225 48.0
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 1.9e-43 180.3 227 48.5
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 5.4e-43 178.7 468 31.4
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 5.4e-43 178.7 221 47.5
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 9.2e-43 177.9 225 46.2
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 3.5e-42 176.0 403 35.5
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 8.6e-41 171.4 225 45.3
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 1.9e-40 170.2 233 45.5
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 5.6e-40 168.7 225 44.9
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 7.6e-37 158.3 124 64.5
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 7.6e-37 158.3 124 64.5
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 3.0e-33 146.4 214 42.5
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 8.6e-33 144.8 217 41.5
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 1.5e-32 144.1 203 45.3
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.5e-32 143.3 212 44.8
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.4e-30 137.5 420 29.5
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 2.0e-29 133.7 232 40.1
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 5.8e-29 132.1 345 31.0
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 1.4e-27 127.5 229 34.1
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.2e-26 124.4 173 46.2
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 1.6e-26 124.0 161 49.1
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 3.0e-25 119.8 70 81.4
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 8.7e-25 118.2 70 81.4
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.5e-24 117.5 205 40.5
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.9e-24 117.1 70 82.9
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.9e-24 117.1 73 76.7
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.3e-24 116.3 70 80.0
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 2.4e-22 110.2 119 49.6
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 5.3e-22 109.0 190 38.4
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.9e-20 103.2 169 37.9
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 9.3e-19 98.2 63 73.0
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.5e-18 96.3 143 41.3
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.0e-18 95.5 69 63.8
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 1.0e-17 94.7 69 66.7
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.7e-17 92.0 69 62.3
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 8.7e-17 91.7 98 56.1
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 1.1e-16 91.3 63 66.7
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 1.1e-16 91.3 136 42.6
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 2.5e-16 90.1 62 64.5
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 5.6e-16 89.0 131 42.7
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 7.4e-16 88.6 63 65.1
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 1.4e-14 84.3 132 42.4
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 1.8e-14 84.0 63 65.1
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 1.8e-14 84.0 63 65.1
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 3.1e-14 83.2 64 68.8
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 5.3e-14 82.4 121 37.2
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 6.9e-14 82.0 48 81.2
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 1.2e-13 81.3 54 66.7
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.6e-13 80.1 46 80.4
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.3e-12 77.8 128 39.1
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 4.9e-12 75.9 70 58.6
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 4.9e-12 75.9 70 58.6
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 1.1e-11 74.7 68 54.4
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 6.0e-10 68.9 59 55.9
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 6.7e-09 65.5 41 73.2
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.1e-06 58.2 63 47.6
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.1e-06 58.2 138 32.6


User provided reference genes

Program Settings