Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 0.0e+00 1174.1 602 100.0
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 0.0e+00 1097.4 601 93.5
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 0.0e+00 1077.0 602 90.5
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 4.1e-312 1073.9 602 90.4
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 4.9e-311 1070.5 602 90.0
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 2.9e-308 1061.2 599 91.3
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 1.3e-303 1045.8 588 90.6
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 6.6e-244 847.4 606 71.5
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.6e-237 826.2 600 69.7
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 6.0e-237 824.3 605 69.9
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 7.8e-237 823.9 600 69.5
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.7e-236 822.8 603 69.7
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 1.9e-235 819.3 603 69.8
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 4.3e-235 818.1 607 69.2
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 2.8e-234 815.5 619 68.7
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 8.1e-234 813.9 598 69.4
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 8.1e-234 813.9 598 68.7
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.1e-233 813.5 595 68.4
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.4e-233 813.1 597 67.8
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 5.3e-233 811.2 596 69.1
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 6.9e-233 810.8 601 69.2
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 9.9e-232 807.0 599 67.4
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 1.3e-231 806.6 592 68.9
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.7e-231 806.2 601 69.2
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.7e-231 806.2 602 69.1
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 1.9e-230 802.7 605 68.4
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 3.2e-230 802.0 590 68.6
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.4e-230 801.2 594 68.2
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 5.4e-230 801.2 590 68.6
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.2e-229 800.0 603 67.7
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.6e-229 799.7 590 68.1
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 2.1e-229 799.3 587 68.5
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 2.7e-229 798.9 604 67.2
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 1.3e-228 796.6 594 68.2
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 3.9e-228 795.0 591 68.0
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 1.1e-227 793.5 595 68.2
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 1.5e-227 793.1 591 68.0
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.9e-227 792.7 597 67.0
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 1.9e-227 792.7 619 66.1
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 5.6e-227 791.2 594 67.8
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 9.6e-227 790.4 601 67.1
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 1.3e-226 790.0 604 67.5
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.1e-226 789.3 589 67.9
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.8e-225 786.2 589 66.7
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 5.3e-225 784.6 608 66.6
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 5.3e-225 784.6 605 67.8
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 2.0e-224 782.7 594 68.2
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 5.8e-224 781.2 599 66.6
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 1.3e-223 780.0 602 66.9
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 2.2e-223 779.2 588 66.3
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 4.9e-223 778.1 558 69.0
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.4e-222 776.5 599 67.4
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 1.4e-222 776.5 633 64.0
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 2.4e-222 775.8 608 66.6
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 2.4e-222 775.8 597 65.5
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 7.1e-222 774.2 628 64.5
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.8e-220 769.6 597 64.0
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 6.2e-218 761.1 599 65.4
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 5.3e-217 758.1 592 65.7
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 5.8e-216 754.6 603 64.0
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.0e-215 753.8 604 64.6
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 1.0e-215 753.8 621 62.2
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.7e-215 753.1 589 64.3
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 2.2e-215 752.7 602 64.3
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.9e-215 752.3 580 67.1
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 3.8e-215 751.9 603 63.0
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 1.4e-214 750.0 604 62.6
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 6.0e-213 744.6 599 64.1
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 1.3e-212 743.4 548 67.7
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.5e-211 740.0 601 63.2
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 2.5e-211 739.2 594 64.1
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 4.3e-211 738.4 599 63.8
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 7.4e-211 737.6 592 64.4
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 7.4e-211 737.6 597 63.3
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.1e-210 736.1 590 63.9
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 8.2e-210 734.2 599 63.1
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 8.2e-210 734.2 601 64.1
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 4.1e-209 731.9 601 63.9
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 2.0e-208 729.6 606 63.7
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 2.0e-208 729.6 541 69.3
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 2.2e-207 726.1 595 62.2
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 5.0e-207 724.9 599 62.6
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 6.5e-207 724.5 599 62.4
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 9.3e-206 720.7 597 63.7
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.3e-204 716.8 585 62.4
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 5.1e-204 714.9 583 63.0
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 6.7e-204 714.5 599 62.6
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 2.5e-203 712.6 599 62.3
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 3.3e-203 712.2 598 64.0
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 4.3e-203 711.8 597 62.5
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 1.6e-202 709.9 607 61.9
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 2.2e-202 709.5 594 63.1
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 3.1e-201 705.7 614 59.8
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 5.3e-201 704.9 587 61.3
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.0e-199 700.7 596 62.9
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 1.7e-199 699.9 591 61.4
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 3.8e-199 698.7 606 60.7
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 3.8e-199 698.7 596 62.8
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 8.5e-199 697.6 598 62.0
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 5.5e-198 694.9 598 61.7
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.5e-198 694.9 598 61.7
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 5.5e-198 694.9 603 60.0
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 4.6e-197 691.8 532 64.7
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.8e-196 689.9 598 61.5
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 6.7e-196 688.0 604 60.3
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.0e-195 686.4 592 61.7
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 4.3e-195 685.3 596 61.2
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 6.3e-194 681.4 598 60.9
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 4.7e-189 665.2 587 61.0
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 1.4e-188 663.7 574 59.6
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 9.7e-187 657.5 524 64.9
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.3e-186 657.1 593 58.5
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 8.2e-186 654.4 597 58.3
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 7.7e-184 647.9 597 60.1
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 1.6e-181 640.2 596 58.6
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 1.3e-178 630.6 598 55.5
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 4.1e-177 625.5 587 57.2
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 2.2e-167 593.2 595 52.4
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.6e-165 587.0 594 54.5
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.1e-165 586.6 593 55.0
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.3e-162 577.4 607 51.7
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 3.1e-161 572.8 622 50.2
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.8e-153 547.0 467 62.1
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 1.9e-150 537.0 603 48.9
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.9e-145 520.4 433 62.1
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 9.2e-137 491.5 613 45.8
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 1.5e-126 457.6 393 62.6
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 6.0e-120 435.6 627 39.7
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 8.1e-117 425.2 453 47.9
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 9.0e-116 421.8 501 48.5
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 2.0e-115 420.6 319 64.9
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.2e-113 412.9 317 65.9
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.5e-107 394.4 356 59.8
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 1.4e-105 387.9 624 39.4
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.0e-98 365.2 353 55.8
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 2.9e-82 310.5 267 60.7
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 2.0e-78 297.7 616 33.3
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 7.2e-73 279.3 631 33.3
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 3.5e-67 260.4 222 59.9
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 2.9e-66 257.3 232 61.2
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 5.0e-66 256.5 183 72.1
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.7e-61 240.4 122 96.7
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 8.8e-55 219.2 165 64.8
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.1e-52 212.2 113 93.8
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.4e-52 211.8 113 92.9
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 1.4e-52 211.8 371 40.4
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.2e-51 208.8 135 70.4
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 2.4e-36 157.9 133 63.2
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 3.6e-32 144.1 127 62.2
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.6e-30 137.9 174 49.4
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 1.3e-29 135.6 206 42.2
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.7e-27 127.9 92 66.3
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.8e-27 126.3 92 65.2
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.1e-25 122.5 79 65.8
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 7.3e-25 119.8 80 71.2
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 5.8e-22 110.2 82 68.3
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 9.9e-22 109.4 180 41.7
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 2.5e-17 94.7 106 54.7
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 1.2e-16 92.4 65 69.2
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 1.4e-15 89.0 137 41.6
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 1.3e-13 82.4 70 60.0
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 1.7e-13 82.0 56 62.5
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.1e-12 79.3 38 100.0
Sc03g0007490 Simmondsia chinensis HOM05D004159 ORTHO05D388831 6.2e-08 63.5 100 44.0
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 1.2e-06 59.3 136 35.3
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 1.2e-06 59.3 40 67.5
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 1.5e-06 58.9 34 79.4
Gohir.D03G083350 Gossypium hirsutum HOM05D000251 ORTHO05D018866 7.6e-06 56.6 32 87.5


User provided reference genes

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