Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 2.6e-106 389.0 242 100.0
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 4.7e-100 368.2 242 93.8
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.4e-99 366.7 242 91.7
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.4e-99 366.7 242 93.4
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.4e-99 366.7 242 89.3
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.5e-98 363.2 242 91.3
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.0e-98 362.8 242 88.4
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.5e-93 346.7 242 86.4
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 9.6e-93 344.0 242 87.2
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.6e-92 343.2 242 86.4
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 2.1e-92 342.8 241 86.3
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 2.8e-92 342.4 242 82.6
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 3.6e-92 342.0 242 86.4
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 8.1e-92 340.9 242 85.5
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 8.1e-92 340.9 242 75.6
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.4e-91 340.1 241 83.4
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.1e-91 339.0 242 85.1
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 3.1e-91 339.0 238 86.1
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 4.0e-91 338.6 242 85.5
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 8.9e-91 337.4 239 76.6
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.5e-90 336.7 242 83.9
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.5e-90 336.7 243 74.1
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 3.4e-90 335.5 241 80.9
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 4.4e-90 335.1 239 83.3
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 7.6e-90 334.3 205 83.9
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 1.3e-89 333.6 237 76.4
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 2.2e-89 332.8 205 83.9
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 2.9e-89 332.4 243 83.5
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 2.9e-89 332.4 242 80.6
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 3.8e-89 332.0 242 83.5
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 4.9e-89 331.6 241 83.4
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 4.9e-89 331.6 242 81.8
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 8.4e-89 330.9 239 83.7
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 4.2e-88 328.6 239 79.1
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 4.2e-88 328.6 205 83.4
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.2e-87 327.0 239 81.2
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.2e-87 327.0 239 81.2
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.2e-87 327.0 239 81.6
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.2e-87 327.0 239 74.5
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.5e-87 325.5 205 82.9
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 3.5e-87 325.5 239 83.3
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 4.6e-87 325.1 205 82.4
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.0e-87 324.7 243 73.3
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.3e-86 323.6 239 73.6
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 1.7e-86 323.2 242 82.6
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.9e-86 322.0 228 86.8
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 5.1e-86 321.6 239 73.2
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 6.6e-86 321.2 205 82.0
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 8.7e-86 320.9 242 76.0
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.1e-85 320.5 205 81.5
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.9e-85 319.7 243 76.1
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 2.5e-85 319.3 243 75.7
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 3.3e-85 318.9 205 80.5
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 5.6e-85 318.2 196 85.2
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.3e-84 317.0 239 80.3
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.6e-84 316.6 208 81.2
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.6e-84 316.6 202 80.7
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.8e-84 315.8 233 79.8
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.8e-84 315.8 202 81.2
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 3.6e-84 315.5 205 80.5
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 3.6e-84 315.5 238 80.7
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 4.8e-84 315.1 241 80.1
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 8.1e-84 314.3 193 85.5
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 8.1e-84 314.3 202 81.2
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.4e-83 313.5 239 73.2
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.4e-83 313.5 239 79.5
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.4e-83 313.5 239 82.0
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.4e-83 313.5 206 80.1
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.8e-83 313.2 242 78.9
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.4e-83 312.8 206 79.6
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 3.1e-83 312.4 228 80.7
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 3.1e-83 312.4 242 80.6
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 4.0e-83 312.0 206 79.6
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 6.9e-83 311.2 242 78.9
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.2e-82 310.5 197 81.7
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.2e-82 310.5 243 77.4
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.5e-82 310.1 242 69.0
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.5e-82 310.1 206 79.1
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.6e-82 309.3 204 80.4
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 3.4e-82 308.9 206 80.6
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 4.4e-82 308.5 246 68.3
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 9.9e-82 307.4 202 78.7
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 9.9e-82 307.4 205 78.0
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.3e-81 307.0 241 78.4
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.3e-81 307.0 245 75.9
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.3e-81 307.0 206 78.6
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 3.8e-81 305.4 202 77.7
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 4.9e-81 305.1 199 80.4
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.4e-80 302.8 200 80.5
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.2e-80 302.4 200 80.5
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 4.2e-80 302.0 205 77.1
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 5.4e-80 301.6 204 77.5
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 9.3e-80 300.8 202 77.7
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.5e-79 298.9 204 77.5
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 4.6e-79 298.5 202 77.2
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 4.6e-79 298.5 204 77.9
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.6e-79 298.5 202 76.2
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 4.6e-79 298.5 229 76.9
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 6.0e-79 298.1 204 77.0
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 6.0e-79 298.1 204 77.5
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.3e-78 297.0 239 68.2
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.7e-78 296.6 234 69.2
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.7e-78 296.6 183 85.2
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 3.9e-78 295.4 202 77.7
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.9e-78 295.4 202 75.7
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 3.9e-78 295.4 203 76.4
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.1e-77 293.9 239 66.1
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.5e-77 292.7 239 68.6
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 2.5e-77 292.7 204 77.0
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 4.3e-77 292.0 204 75.5
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 6.2e-76 288.1 239 78.2
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.1e-75 285.8 227 72.2
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 4.0e-75 285.4 210 82.9
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 2.0e-74 283.1 204 73.5
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 2.0e-74 283.1 204 73.5
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 2.6e-74 282.7 203 74.4
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 3.4e-74 282.3 205 69.8
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 5.8e-74 281.6 203 74.4
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 9.9e-74 280.8 204 73.0
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 9.9e-74 280.8 204 73.0
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.4e-67 260.4 178 74.7
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 6.9e-67 258.1 191 71.2
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 2.0e-66 256.5 191 70.2
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 2.6e-66 256.1 202 66.3
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 5.1e-62 241.9 159 79.2
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 2.5e-61 239.6 191 64.9
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.4e-56 223.8 205 64.4
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 2.5e-56 223.0 191 63.9
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 7.9e-55 218.0 205 60.0
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.2e-49 199.9 133 76.7
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 6.7e-46 188.3 133 76.7
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 7.4e-45 184.9 111 82.0
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.6e-39 167.2 205 53.2
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 6.7e-38 161.8 174 50.6
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.1e-37 161.0 105 75.2
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 2.2e-36 156.8 171 50.3
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.8e-27 127.1 86 70.9
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 3.1e-27 126.3 182 40.1
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 8.5e-25 118.2 91 68.1
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.5e-16 90.9 182 31.3
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 2.1e-15 87.0 56 76.8
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.5e-13 80.9 52 82.7
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 1.3e-12 77.8 179 31.8
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.8e-11 73.9 52 73.1


User provided reference genes

Program Settings