Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib170G0622 Durio zibethinus HOM05D004103 ORTHO05D005242 6.5e-246 853.6 427 100.0
Thecc.07G013500 Theobroma cacao HOM05D004103 ORTHO05D005242 9.5e-221 770.0 463 84.2
Duzib213G0942 Durio zibethinus HOM05D004103 ORTHO05D005242 3.4e-218 761.5 463 83.6
COL.COLO4_09834 Corchorus olitorius HOM05D004103 ORTHO05D005242 1.5e-213 746.1 463 81.9
Gorai.013G152600 Gossypium raimondii HOM05D004103 ORTHO05D005242 4.3e-213 744.6 464 81.5
Gohir.A13G132700 Gossypium hirsutum HOM05D004103 ORTHO05D005242 1.6e-212 742.7 464 81.0
Atru.chr2.3690 Acer truncatum HOM05D004103 ORTHO05D005242 4.5e-186 654.8 464 70.9
Ciclev10008206m.g Citrus clementina HOM05D004103 ORTHO05D005242 1.9e-184 649.4 464 70.9
Cfa020190 Carpinus fangiana HOM05D004103 ORTHO05D005242 2.5e-181 639.0 470 67.9
Potri.001G368100 Populus trichocarpa HOM05D004103 ORTHO05D005242 4.0e-179 631.7 465 68.0
Sabra16G0241200 Salix brachista HOM05D004103 ORTHO05D005242 5.3e-179 631.3 465 68.2
QL08p004112 Quercus lobata HOM05D004103 ORTHO05D005242 2.2e-177 625.9 471 66.7
TWI38G1679 Tripterygium wilfordii HOM05D004103 ORTHO05D005242 4.9e-177 624.8 465 67.7
CiPaw.11G204100 Carya illinoinensis HOM05D004103 ORTHO05D005242 6.5e-177 624.4 470 68.1
CsaV3_7G011360 Cucumis sativus L. HOM05D004103 ORTHO05D005242 6.5e-177 624.4 473 66.2
Sp6g17670 Schrenkiella parvula HOM05D004103 ORTHO05D005242 6.5e-177 624.4 468 66.5
MELO3C024942.2 Cucumis melo HOM05D004103 ORTHO05D005242 1.1e-176 623.6 472 65.9
THA.LOC104811666 Tarenaya hassleriana HOM05D004103 ORTHO05D005242 1.4e-176 623.2 463 67.4
Prupe.4G243700 Prunus persica HOM05D004103 ORTHO05D005242 3.2e-176 622.1 471 66.2
Thhalv10013461m.g Eutrema salsugineum HOM05D004103 ORTHO05D005242 7.1e-176 620.9 468 66.2
ClCG09G021370 Citrullus lanatus HOM05D004103 ORTHO05D005242 2.7e-175 619.0 477 65.0
Sed0001626 Sechium edule HOM05D004103 ORTHO05D005242 2.7e-175 619.0 469 67.2
A03p13830 Brassica napus HOM05D004103 ORTHO05D005242 4.6e-175 618.2 469 65.9
AL8G31340 Arabidopsis lyrata HOM05D004103 ORTHO05D005242 7.9e-175 617.5 471 65.6
BraA03t10686Z Brassica rapa HOM05D004103 ORTHO05D005242 7.9e-175 617.5 469 65.7
Carub.0008s1614 Capsella rubella HOM05D004103 ORTHO05D005242 7.9e-175 617.5 469 65.7
BolC3t14049H Brassica oleracea HOM05D004103 ORTHO05D005242 1.8e-174 616.3 469 65.7
CiPaw.12G138300 Carya illinoinensis HOM05D004103 ORTHO05D005242 1.8e-174 616.3 471 67.1
BcaC01g06391 Brassica carinata HOM05D004103 ORTHO05D005242 1.1e-173 613.6 469 65.2
C03p16270 Brassica napus HOM05D004103 ORTHO05D005242 1.1e-173 613.6 469 65.2
Haze_09826 Corylus avellana HOM05D004103 ORTHO05D005242 1.1e-173 613.6 493 64.1
GSVIVG01014688001 Vitis vinifera HOM05D004103 ORTHO05D005242 3.3e-173 612.1 466 66.5
MD11G1199100 Malus domestica HOM05D004103 ORTHO05D005242 1.3e-172 610.1 471 65.0
AT5G55760 Arabidopsis thaliana HOM05D004103 ORTHO05D005242 2.2e-172 609.4 468 65.0
Medtr3g460800 Medicago truncatula HOM05D004103 ORTHO05D005242 3.7e-172 608.6 465 65.4
AL77U10010 Arabidopsis lyrata HOM05D004103 ORTHO05D005242 2.6e-170 602.4 500 61.8
CANSAT11G1558 Cannabis sativa HOM05D004103 ORTHO05D005242 4.5e-170 601.7 466 65.5
MD03G1179400 Malus domestica HOM05D004103 ORTHO05D005242 7.7e-170 600.9 473 63.8
Glyma.18G076300 Glycine max HOM05D004103 ORTHO05D005242 1.7e-169 599.7 467 63.8
Phvul.006G057700 Phaseolus vulgaris HOM05D004103 ORTHO05D005242 3.8e-169 598.6 467 63.4
Nitab4.5_0002736g0050 Nicotiana tabacum HOM05D004103 ORTHO05D005242 1.1e-168 597.0 466 64.8
Aa31LG3G11690 Aethionema arabicum HOM05D004103 ORTHO05D005242 1.9e-168 596.3 481 63.2
Lj6g0015560 Lotus japonicus HOM05D004103 ORTHO05D005242 1.9e-168 596.3 466 63.3
CSS0020645 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 3.2e-168 595.5 471 65.0
FvH4_3g29170 Fragaria vesca HOM05D004103 ORTHO05D005242 4.2e-168 595.1 471 62.8
FAN11G2140 Fragaria x ananassa HOM05D004103 ORTHO05D005242 4.2e-168 595.1 471 62.8
Psat5g167680 Pisum sativum HOM05D004103 ORTHO05D005242 5.5e-168 594.7 463 64.4
Hma1.2p1_1402F.1_g281120 Hydrangea macrophylla HOM05D004103 ORTHO05D005242 9.4e-168 594.0 475 63.8
arahy.Tifrunner.gnm1.ann1.PC7QSD Arachis hypogaea HOM05D004103 ORTHO05D005242 2.1e-167 592.8 470 62.6
arahy.Tifrunner.gnm1.ann1.V7V5NB Arachis hypogaea HOM05D004103 ORTHO05D005242 2.1e-167 592.8 470 62.8
FAN25G3398 Fragaria x ananassa HOM05D004103 ORTHO05D005242 3.9e-166 588.6 471 62.0
Solyc07g065550.3 Solanum lycopersicum HOM05D004103 ORTHO05D005242 1.1e-165 587.0 464 63.4
RcHm_v2.0_Chr5g0053471 Rosa chinensis HOM05D004103 ORTHO05D005242 1.5e-165 586.6 470 63.2
BcaB01g04374 Brassica carinata HOM05D004103 ORTHO05D005242 1.9e-165 586.3 469 63.1
CAN.G623.3 Capsicum annuum HOM05D004103 ORTHO05D005242 2.5e-165 585.9 463 64.8
Dinv40861 Davidia involucrata HOM05D004103 ORTHO05D005242 3.3e-165 585.5 472 64.2
Actinidia05004 Actinidia chinensis HOM05D004103 ORTHO05D005242 7.4e-165 584.3 463 63.7
Oeu005958.1 Olea europaea HOM05D004103 ORTHO05D005242 9.7e-165 583.9 476 63.0
Peaxi162Scf00139g01322 Petunia axillaris HOM05D004103 ORTHO05D005242 1.3e-164 583.6 475 62.1
Migut.M01651 Erythranthe guttata HOM05D004103 ORTHO05D005242 2.8e-164 582.4 477 62.9
SalBow8G0562 Salvia bowleyana HOM05D004103 ORTHO05D005242 6.3e-164 581.3 491 61.5
Manes.03G141400 Manihot esculenta HOM05D004103 ORTHO05D005242 8.2e-164 580.9 422 68.7
FAN21G3724 Fragaria x ananassa HOM05D004103 ORTHO05D005242 1.8e-163 579.7 462 62.1
Sopen07g033750 Solanum pennellii HOM05D004103 ORTHO05D005242 9.1e-163 577.4 483 60.7
Eucgr.F02047 Eucalyptus grandis HOM05D004103 ORTHO05D005242 2.2e-161 572.8 465 62.2
Sc03g0011390 Simmondsia chinensis HOM05D004103 ORTHO05D005242 2.2e-161 572.8 470 61.7
MSTRG.15796 Avicennia marina HOM05D004103 ORTHO05D005242 2.9e-161 572.4 476 63.2
Nn1g07514 Nelumbo nucifera HOM05D004103 ORTHO05D005242 4.7e-159 565.1 470 60.9
PGR083G2215 Punica granatum HOM05D004103 ORTHO05D005242 6.7e-158 561.2 464 60.8
Hund06463 Selenicereus undatus HOM05D004103 ORTHO05D005242 2.8e-156 555.8 472 60.0
AUR62036459 Chenopodium quinoa HOM05D004103 ORTHO05D005242 4.8e-156 555.1 478 59.4
AUR62017106 Chenopodium quinoa HOM05D004103 ORTHO05D005242 8.2e-156 554.3 489 58.9
SGA_v2.0_scaffold171G38864 Striga asiatica HOM05D004103 ORTHO05D005242 1.8e-155 553.1 480 60.2
Actinidia30403 Actinidia chinensis HOM05D004103 ORTHO05D005242 3.1e-155 552.4 470 60.4
Gohir.D13G136100 Gossypium hirsutum HOM05D004103 ORTHO05D005242 5.3e-155 551.6 338 81.7
Aqoxy4G02289 Aquilegia oxysepala HOM05D004103 ORTHO05D005242 1.2e-154 550.4 470 60.2
HanXRQChr05g0160111 Helianthus annuus HOM05D004103 ORTHO05D005242 4.5e-154 548.5 470 60.0
vmacro11590 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 1.7e-153 546.6 481 59.0
Lsat_1_v5_gn_5_1860 Lactuca sativa HOM05D004103 ORTHO05D005242 2.9e-153 545.8 472 59.1
Dinv21305 Davidia involucrata HOM05D004103 ORTHO05D005242 3.2e-152 542.3 481 58.4
Rhsim06G0229800 Rhododendron simsii HOM05D004103 ORTHO05D005242 1.8e-150 536.6 513 55.9
Nitab4.5_0009777g0010 Nicotiana tabacum HOM05D004103 ORTHO05D005242 3.9e-150 535.4 437 62.9
Lj1A797G65 Lonicera japonica HOM05D004103 ORTHO05D005242 1.1e-149 533.9 447 60.0
unitig_747.g21638 Utricularia gibba HOM05D004103 ORTHO05D005242 1.1e-149 533.9 431 62.9
MBI14_g08099_MAGBIO Magnolia biondii HOM05D004103 ORTHO05D005242 2.0e-149 533.1 468 59.2
CSS0037338 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 3.7e-148 528.9 512 55.1
PGSC0003DMG400022278 Solanum tuberosum HOM05D004103 ORTHO05D005242 8.2e-148 527.7 424 62.3
EL10Ac4g07564 Beta vulgaris HOM05D004103 ORTHO05D005242 3.1e-147 525.8 476 58.4
Cpa.g.sc12.142 Carica papaya HOM05D004103 ORTHO05D005242 5.9e-146 521.5 337 76.9
Lj1A890G48 Lonicera japonica HOM05D004103 ORTHO05D005242 5.0e-145 518.5 490 56.9
Cc00_g16050 Coffea canephora HOM05D004103 ORTHO05D005242 1.1e-144 517.3 457 57.8
ATR0691G219 Amborella trichopoda HOM05D004103 ORTHO05D005242 1.2e-141 507.3 427 59.5
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 5.7e-141 505.0 431 57.8
Ciclev10017468m.g Citrus clementina HOM05D004103 ORTHO05D005242 7.5e-141 504.6 431 60.1
PSO541G4137 Papaver somniferum HOM05D004103 ORTHO05D005242 6.3e-140 501.5 472 54.4
ECA246G0435 Erigeron canadensis HOM05D004103 ORTHO05D005242 8.2e-140 501.1 433 60.5
HanXRQChr03g0075041 Helianthus annuus HOM05D004103 ORTHO05D005242 2.4e-139 499.6 452 54.9
CDE10G0035 Ceratophyllum demersum HOM05D004103 ORTHO05D005242 7.7e-138 494.6 468 55.3
QL04p068062 Quercus lobata HOM05D004103 ORTHO05D005242 1.3e-137 493.8 466 55.2
PSO675G6166 Papaver somniferum HOM05D004103 ORTHO05D005242 1.1e-136 490.7 472 54.0
Os04g0271000 Oryza sativa ssp. japonica HOM05D004103 ORTHO05D005242 5.5e-136 488.4 454 54.6
Zm00001eb425070 Zea mays HOM05D004103 ORTHO05D005242 5.5e-136 488.4 450 55.1
Lsat_1_v5_gn_9_103601 Lactuca sativa HOM05D004103 ORTHO05D005242 3.4e-133 479.2 476 52.1
DCAR_019676 Daucus carota HOM05D004103 ORTHO05D005242 3.5e-130 469.2 429 55.2
Sc03g0011310 Simmondsia chinensis HOM05D004103 ORTHO05D005242 1.5e-128 463.8 343 65.9
Sc21g0000570 Simmondsia chinensis HOM05D004103 ORTHO05D005242 3.3e-128 462.6 438 54.1
CSS0030605 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 1.0e-126 457.6 426 56.3
Ca_22143_v3 Cicer arietinum L. HOM05D004103 ORTHO05D005242 4.4e-125 452.2 525 47.8
TAR629G0286 Trochodendron aralioides HOM05D004103 ORTHO05D005242 1.8e-123 446.8 332 69.6
Rhsim06G0177100 Rhododendron simsii HOM05D004103 ORTHO05D005242 8.0e-119 431.4 520 48.1
Actinidia07861 Actinidia chinensis HOM05D004103 ORTHO05D005242 1.8e-118 430.3 313 65.8
Glyma.08G330200 Glycine max HOM05D004103 ORTHO05D005242 7.5e-117 424.9 299 69.6
Lalb_Chr15g0082141 Lupinus albus HOM05D004103 ORTHO05D005242 4.1e-115 419.1 287 72.1
TPR.G24129 Trifolium pratense HOM05D004103 ORTHO05D005242 3.1e-110 402.9 278 70.5
vmacro12077 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 1.2e-109 401.0 632 40.8
EL10Ac9g22672 Beta vulgaris HOM05D004103 ORTHO05D005242 4.4e-109 399.1 398 52.3
Pp3c19_11620 Physcomitrium patens HOM05D004103 ORTHO05D005242 3.7e-108 396.0 402 50.7
CDE10G0306 Ceratophyllum demersum HOM05D004103 ORTHO05D005242 5.2e-102 375.6 425 48.7
SMO234G0037 Selaginella moellendorffii HOM05D004103 ORTHO05D005242 4.6e-98 362.5 317 59.0
HPP92_018200 Vanilla planifolia HOM05D004103 ORTHO05D005242 9.6e-80 301.6 340 49.4
PRCOL_00006128 Prasinoderma coloniale HOM05D004103 ORTHO05D005242 7.4e-72 275.4 297 48.5
SHI10165 Sapria himalayana HOM05D004103 ORTHO05D005242 7.6e-69 265.4 472 35.8
BcaB01g04371 Brassica carinata HOM05D004103 ORTHO05D005242 1.3e-68 264.6 254 54.3
MCO09G505 Micromonas commoda HOM05D004103 ORTHO05D005242 1.1e-67 261.5 282 50.7
VMungo0540G0291 Vigna mungo HOM05D004103 ORTHO05D005242 3.2e-67 260.0 251 52.2
Cre10.g462200 Chlamydomonas reinhardtii HOM05D004103 ORTHO05D005242 3.3e-64 250.0 333 39.3
HPP92_018245 Vanilla planifolia HOM05D004103 ORTHO05D005242 2.2e-60 237.3 202 61.4
Atru.chr6.3401 Acer truncatum HOM05D004103 ORTHO05D005242 6.3e-55 219.2 217 53.5
CSS0043319 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 1.0e-49 201.8 189 56.6
Atru.chr5.3346 Acer truncatum HOM05D004103 ORTHO05D005242 5.7e-48 196.1 178 55.6
CBR_g46413 Chara braunii HOM05D004103 ORTHO05D005242 3.1e-46 190.3 257 42.0
CARHR269070 Cardamine hirsuta HOM05D004103 ORTHO05D005242 1.3e-44 184.9 97 82.5
AagrBONN_evm.TU.Sc2ySwM_228.570 Anthoceros agrestis HOM05D004103 ORTHO05D005242 5.5e-43 179.5 315 34.9
Mapoly0037s0047 Marchantia polymorpha HOM05D004103 ORTHO05D005242 1.6e-42 177.9 328 33.8
CSS0050447 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 2.7e-42 177.2 145 62.1
Lalb_Chr15g0082151 Lupinus albus HOM05D004103 ORTHO05D005242 3.0e-41 173.7 179 50.8
AagrBONN_evm.TU.Sc2ySwM_362.1427 Anthoceros agrestis HOM05D004103 ORTHO05D005242 6.7e-41 172.6 278 36.3
CSS0003811 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 4.4e-40 169.9 141 61.0
Pp3c3_24240 Physcomitrium patens HOM05D004103 ORTHO05D005242 7.4e-40 169.1 272 36.8
CBR_g70742 Chara braunii HOM05D004103 ORTHO05D005242 2.4e-38 164.1 315 31.4
CSS0033695 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 7.7e-37 159.1 137 59.9
Haze_26165 Corylus avellana HOM05D004103 ORTHO05D005242 6.7e-33 146.0 282 36.2
TPR.G796 Trifolium pratense HOM05D004103 ORTHO05D005242 9.7e-32 142.1 154 45.5
Cpa.g.sc12.139 Carica papaya HOM05D004103 ORTHO05D005242 2.8e-31 140.6 119 58.0
SEGI_18003 Sequoiadendron giganteum HOM05D004103 ORTHO05D005242 1.9e-27 127.9 168 37.5
Actinidia07863 Actinidia chinensis HOM05D004103 ORTHO05D005242 1.2e-26 125.2 74 79.7
SEGI_32632 Sequoiadendron giganteum HOM05D004103 ORTHO05D005242 2.7e-26 124.0 74 78.4
MCO09G442 Micromonas commoda HOM05D004103 ORTHO05D005242 1.0e-25 122.1 260 32.3
AagrBONN_evm.TU.Sc2ySwM_228.1314 Anthoceros agrestis HOM05D004103 ORTHO05D005242 2.3e-25 120.9 74 78.4
Lj6g0008173 Lotus japonicus HOM05D004103 ORTHO05D005242 1.1e-22 112.1 117 47.9
CBR_g41556 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-20 102.8 106 49.1
PRCOL_00004819 Prasinoderma coloniale HOM05D004103 ORTHO05D005242 9.4e-19 99.0 317 26.5
PRCOL_00001731 Prasinoderma coloniale HOM05D004103 ORTHO05D005242 6.1e-18 96.3 313 28.8
CBR_g41558 Chara braunii HOM05D004103 ORTHO05D005242 1.8e-17 94.7 62 66.1
FAN16G2423 Fragaria x ananassa HOM05D004103 ORTHO05D005242 1.2e-16 92.0 122 39.3
FAN16G2922 Fragaria x ananassa HOM05D004103 ORTHO05D005242 1.2e-16 92.0 122 39.3
AagrBONN_evm.TU.Sc2ySwM_228.1317 Anthoceros agrestis HOM05D004103 ORTHO05D005242 1.3e-15 88.6 60 73.3
CBR_g41560 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-15 87.8 64 64.1
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.3e-15 86.3 65 69.2
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.3e-15 86.3 65 69.2
Gohir.D05G046500 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.1e-14 83.6 65 64.6
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.0e-14 82.8 65 69.2
SMO139G0017 Selaginella moellendorffii HOM05D004103 ORTHO05D014807 4.5e-13 80.1 220 28.2
CDE08G1654 Ceratophyllum demersum HOM05D005757 ORTHO05D007090 4.2e-11 73.6 247 23.5
CBR_g42169 Chara braunii HOM05D004103 ORTHO05D014807 1.2e-10 72.0 253 24.5
Cfa025152 Carpinus fangiana HOM05D004103 ORTHO05D014807 2.1e-10 71.2 226 25.7
Oeu037219.1 Olea europaea HOM05D004103 ORTHO05D005242 2.8e-10 70.9 118 33.1
Pp3c16_14390 Physcomitrium patens HOM05D005757 ORTHO05D007090 2.8e-10 70.9 303 22.8
Duzib150G0114 Durio zibethinus HOM05D001941 ORTHO05D026419 3.6e-10 70.5 37 86.5
Zm00001eb408300 Zea mays HOM05D005757 ORTHO05D007090 6.1e-10 69.7 207 25.6
CARHR269090 Cardamine hirsuta HOM05D004103 ORTHO05D005242 8.0e-10 69.3 139 31.7
HanXRQChr15g0472961 Helianthus annuus HOM05D004103 ORTHO05D005242 1.4e-09 68.6 48 66.7
AL77U10060 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 6.8e-09 66.2 90 42.2
Pp3c17_22290 Physcomitrium patens HOM05D005757 ORTHO05D014807 9.8e-08 62.4 247 22.7
MSTRG.18470 Avicennia marina HOM05D004103 ORTHO05D005242 2.9e-07 60.8 102 41.2
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 2.4e-06 57.8 56 48.2
PRCOL_00006737 Prasinoderma coloniale HOM05D004103 ORTHO05D014807 3.2e-06 57.4 116 27.6
Gohir.A05G381400 Gossypium hirsutum HOM05D005757 ORTHO05D007090 5.4e-06 56.6 188 27.1
Gohir.D04G033900 Gossypium hirsutum HOM05D005757 ORTHO05D007090 5.4e-06 56.6 188 27.1
Gorai.012G038200 Gossypium raimondii HOM05D005757 ORTHO05D007090 5.4e-06 56.6 188 27.1
CARHR204190 Cardamine hirsuta HOM05D005757 ORTHO05D007090 7.0e-06 56.2 147 27.9
Carub.0006s0779 Capsella rubella HOM05D005757 ORTHO05D007090 9.2e-06 55.8 138 27.5
Cpa.g.sc37.11 Carica papaya HOM05D005757 ORTHO05D007090 9.2e-06 55.8 138 27.5


User provided reference genes

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