Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 1.3e-82 309.7 155 100.0
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 6.1e-77 290.8 155 92.9
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 2.3e-76 288.9 155 92.9
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 2.9e-74 282.0 155 87.1
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 8.3e-74 280.4 155 86.5
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.2e-72 276.6 155 85.8
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.6e-72 276.2 155 88.4
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.6e-72 276.2 155 89.0
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 3.5e-72 275.0 155 85.2
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 6.0e-72 274.2 155 86.5
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 6.0e-72 274.2 155 87.7
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.7e-71 272.7 155 87.7
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 1.5e-70 269.6 154 83.1
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.5e-70 268.9 155 86.5
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.2e-69 266.5 155 83.9
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 1.2e-69 266.5 155 83.2
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 2.8e-69 265.4 155 81.9
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.8e-69 265.4 155 86.5
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 6.2e-69 264.2 155 81.3
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 6.2e-69 264.2 155 81.9
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 2.3e-68 262.3 155 79.4
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.3e-68 262.3 155 83.2
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 2.3e-68 262.3 155 80.6
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 6.8e-68 260.8 155 81.9
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 1.2e-67 260.0 155 78.7
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.5e-67 259.6 155 81.3
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.5e-67 259.6 155 80.6
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.6e-67 258.8 155 81.3
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 2.6e-67 258.8 155 79.4
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 4.4e-67 258.1 155 81.9
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.4e-67 258.1 155 78.1
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.5e-67 257.3 155 80.6
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 7.5e-67 257.3 155 80.0
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 1.7e-66 256.1 155 78.1
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 2.2e-66 255.8 155 76.8
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 4.9e-66 254.6 155 74.8
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 6.4e-66 254.2 155 74.2
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 6.4e-66 254.2 155 76.1
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 8.3e-66 253.8 155 79.4
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 7.0e-65 250.8 155 77.4
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 7.0e-65 250.8 155 77.4
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.6e-64 249.6 155 80.0
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 2.1e-64 249.2 155 76.1
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 2.1e-64 249.2 155 75.5
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.0e-63 246.9 156 77.6
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.0e-63 246.9 156 77.6
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 72.3
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.3e-63 246.5 155 72.9
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 74.2
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 3.9e-63 245.0 155 72.3
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 6.6e-63 244.2 155 73.5
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.5e-62 243.0 155 74.8
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 74.8
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.5e-62 242.3 155 74.8
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 73.5
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 75.5
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 7.3e-62 240.7 155 74.2
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 7.3e-62 240.7 155 74.2
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 1.2e-61 240.0 155 74.8
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.2e-61 240.0 155 73.5
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 73.5
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 8.1e-61 237.3 152 73.7
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 8.1e-61 237.3 155 72.3
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.1e-61 237.3 155 71.0
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.1e-61 237.3 155 71.0
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 1.1e-60 236.9 155 71.0
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 71.6
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 72.3
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 3.1e-60 235.3 174 66.7
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 70.3
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 70.3
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 71.0
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.9e-60 233.8 155 70.3
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 69.7
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.2e-59 233.4 152 71.7
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 73.5
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 2.0e-59 232.6 155 72.3
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 4.4e-59 231.5 155 71.0
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 5.8e-59 231.1 145 75.9
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 1.3e-58 229.9 153 69.9
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 1.3e-58 229.9 145 74.5
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 1.7e-58 229.6 152 71.1
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 70.3
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 2.2e-58 229.2 147 71.4
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 4.9e-58 228.0 155 70.3
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.1e-57 226.9 155 71.0
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 4.1e-57 224.9 155 71.6
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.1e-57 224.2 150 76.0
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 69.0
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 3.5e-56 221.9 154 68.2
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 4.6e-56 221.5 147 70.7
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 6.0e-56 221.1 133 77.4
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 7.8e-56 220.7 151 69.5
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 7.8e-56 220.7 147 72.1
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 1.3e-55 219.9 214 55.1
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.3e-55 219.9 150 75.3
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 1.7e-55 219.5 136 77.9
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 3.0e-55 218.8 156 67.9
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 3.9e-55 218.4 156 67.9
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 5.1e-55 218.0 152 68.4
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 3.3e-54 215.3 156 67.3
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 2.1e-53 212.6 156 66.0
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.6e-53 211.8 127 77.2
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 6.2e-53 211.1 150 67.3
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 1.8e-52 209.5 155 64.5
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 5.2e-52 208.0 153 64.1
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.0e-51 206.1 156 63.5
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 4.4e-51 204.9 155 66.5
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 9.2e-49 197.2 188 55.3
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 8.7e-47 190.7 154 57.1
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.1e-46 190.3 154 56.5
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.5e-46 189.9 154 57.1
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.9e-46 189.5 154 57.1
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.9e-46 189.5 156 58.3
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.5e-46 189.1 162 59.9
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.5e-46 189.1 148 61.5
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 4.3e-46 188.3 152 56.6
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.1e-44 183.7 128 64.8
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.4e-44 183.3 146 62.3
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 2.4e-44 182.6 153 54.9
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.4e-43 178.7 114 75.4
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 1.2e-40 170.2 153 55.6
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 3.0e-39 165.6 109 67.9
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 3.3e-38 162.2 109 66.1
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 3.3e-38 162.2 99 77.8
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 7.3e-38 161.0 103 73.8
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 2.8e-37 159.1 144 52.8
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 4.8e-37 158.3 91 81.3
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 9.0e-36 154.1 104 69.2
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 2.9e-34 149.1 83 85.5
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 2.7e-32 142.5 152 52.6
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 8.7e-31 137.5 109 62.4
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.1e-28 130.6 153 43.1
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 6.9e-28 127.9 152 47.4
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.2e-27 127.1 128 53.1
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 1.4e-20 103.6 153 38.6
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.0e-20 102.1 61 73.8
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.0e-20 102.1 61 73.8
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 3.4e-19 99.0 131 42.0
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.3e-17 90.9 68 66.2
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.2e-16 90.5 50 78.0
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 6.1e-16 88.2 68 66.2
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.1e-14 84.0 128 33.6
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 5.5e-09 65.1 117 29.9


User provided reference genes

Program Settings