Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 0.0e+00 1688.3 833 100.0
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 0.0e+00 1467.2 833 86.9
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 0.0e+00 1442.6 833 85.7
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 0.0e+00 1410.6 833 84.0
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 0.0e+00 1407.5 861 81.6
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 0.0e+00 1407.5 834 84.2
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 0.0e+00 1404.0 834 83.9
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 0.0e+00 1271.9 834 77.5
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 0.0e+00 1260.7 833 77.6
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 0.0e+00 1152.5 841 69.3
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 0.0e+00 1135.6 840 68.8
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1130.5 841 68.7
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 0.0e+00 1124.0 879 66.3
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1123.2 841 67.5
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1121.7 840 67.5
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1120.5 840 67.4
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1118.6 839 66.4
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1116.7 841 65.9
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 0.0e+00 1114.8 841 66.8
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 0.0e+00 1112.8 834 67.7
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1112.1 842 68.3
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 0.0e+00 1110.1 837 67.5
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1109.7 841 65.9
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 0.0e+00 1101.3 838 65.2
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 0.0e+00 1094.3 841 66.9
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 0.0e+00 1089.7 838 66.0
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1086.2 854 64.4
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 0.0e+00 1079.3 844 64.5
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.7e-311 1072.4 838 64.9
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 2.3e-311 1072.0 841 64.8
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.1e-310 1069.7 839 64.4
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 2.4e-308 1062.0 841 64.3
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 2.6e-307 1058.5 840 64.4
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 4.9e-306 1054.3 843 63.1
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 1.1e-305 1053.1 848 63.9
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 4.2e-305 1051.2 848 63.8
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 2.7e-304 1048.5 839 63.6
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 7.9e-304 1047.0 848 63.4
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 5.1e-303 1044.3 845 63.3
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.1e-302 1043.1 837 64.5
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 1.2e-296 1023.1 840 62.0
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 6.3e-293 1010.7 841 62.3
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 2.6e-291 1005.4 841 61.4
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 2.9e-290 1001.9 842 61.5
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 6.5e-290 1000.7 842 62.0
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 3.2e-289 998.4 844 61.7
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.2e-289 998.0 840 61.4
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 1.2e-288 996.5 849 61.1
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 1.6e-288 996.1 841 61.7
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 3.6e-288 995.0 832 61.7
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 3.6e-288 995.0 742 67.0
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 6.1e-288 994.2 842 61.0
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 7.9e-288 993.8 838 61.3
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 7.9e-288 993.8 841 61.4
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.8e-287 992.6 839 61.0
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 2.3e-287 992.3 827 63.0
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 3.9e-287 991.5 840 61.1
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 6.7e-287 990.7 835 60.2
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 3.3e-286 988.4 842 60.5
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 3.3e-286 988.4 842 60.7
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 1.3e-285 986.5 841 60.3
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.6e-285 986.1 848 60.5
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.2e-285 985.7 713 69.1
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.7e-285 984.9 880 59.0
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.1e-284 981.9 848 60.4
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 4.1e-284 981.5 827 60.9
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.1e-284 981.5 836 60.6
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 5.3e-284 981.1 841 60.4
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 1.2e-283 979.9 841 60.4
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.2e-283 979.9 848 60.4
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 2.6e-283 978.8 841 60.8
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 3.4e-283 978.4 841 60.8
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.5e-283 978.0 848 60.1
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.7e-282 976.1 836 60.5
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 2.2e-282 975.7 836 60.2
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 3.8e-282 974.9 854 59.3
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 3.8e-282 974.9 782 64.3
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 3.8e-282 974.9 841 59.7
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 5.0e-282 974.5 836 60.4
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.9e-281 972.6 839 60.4
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.5e-281 972.2 840 60.2
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 3.2e-281 971.8 836 59.8
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 9.4e-281 970.3 838 60.7
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.2e-280 969.9 836 59.9
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.6e-280 969.5 836 59.9
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.7e-280 968.8 836 59.9
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 4.6e-280 968.0 836 61.4
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.0e-279 966.8 847 59.4
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 1.4e-279 966.5 815 61.8
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 6.7e-279 964.1 831 59.2
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 2.0e-278 962.6 844 59.0
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 2.2e-277 959.1 835 60.0
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 1.8e-276 956.1 896 57.5
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 2.4e-276 955.7 823 59.7
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.6e-275 952.2 848 59.2
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 4.5e-275 951.4 841 58.9
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 7.7e-275 950.7 834 60.0
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.0e-274 950.3 841 58.5
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 5.0e-274 948.0 829 58.3
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 8.5e-274 947.2 837 59.5
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 1.9e-273 946.0 830 58.8
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 3.6e-272 941.8 834 59.0
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 6.1e-272 941.0 829 59.2
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.0e-271 940.3 836 58.9
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.3e-271 939.1 837 57.9
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 5.2e-271 937.9 834 59.0
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.1e-270 936.8 836 58.7
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 2.0e-270 936.0 837 58.9
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 5.7e-270 934.5 772 62.2
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 5.7e-270 934.5 838 58.2
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 3.7e-269 931.8 835 58.4
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 6.3e-269 931.0 821 58.2
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 1.8e-268 929.5 833 57.9
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 4.1e-268 928.3 852 58.2
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 7.0e-268 927.5 755 63.0
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 1.3e-266 923.3 793 59.9
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 2.2e-266 922.5 816 58.9
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 5.0e-266 921.4 818 58.3
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 5.0e-266 921.4 822 58.3
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 4.7e-264 914.8 833 56.8
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 6.1e-264 914.4 738 62.1
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 5.2e-263 911.4 837 57.0
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.7e-261 906.4 872 57.1
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 5.3e-260 901.4 842 58.2
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.2e-259 900.2 840 57.0
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 7.7e-259 897.5 823 57.4
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 4.2e-257 891.7 843 55.6
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.6e-248 862.1 765 59.0
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 8.8e-247 857.4 642 67.6
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.0e-242 844.0 832 54.8
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.8e-242 842.0 783 55.8
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 3.8e-242 842.0 834 54.9
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 5.0e-242 841.6 833 53.8
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 8.6e-242 840.9 830 54.5
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 2.5e-241 839.3 834 54.1
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 4.0e-239 832.0 843 53.7
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.2e-232 810.4 842 52.1
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 6.4e-229 798.1 837 52.1
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 4.7e-224 781.9 856 51.6
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 3.7e-221 772.3 831 52.0
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 4.3e-217 758.8 709 55.4
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.3e-213 747.3 846 49.4
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 8.7e-178 628.2 594 57.4
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 3.2e-172 609.8 727 49.5
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.1e-167 594.7 908 39.3
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 2.9e-165 586.6 428 68.5
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 8.8e-162 575.1 927 38.7
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 1.9e-156 557.4 864 37.5
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 3.1e-151 540.0 929 36.0
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 5.0e-133 479.6 917 34.6
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.7e-128 463.4 419 58.7
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 4.3e-124 449.9 458 55.5
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 9.2e-111 405.6 322 64.3
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.6e-107 394.8 300 67.7
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.4e-106 391.7 500 46.0
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 4.0e-106 390.2 645 36.3
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 9.2e-95 352.4 248 70.2
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 6.9e-82 309.7 261 60.5
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 3.5e-78 297.4 321 49.2
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.6e-75 288.5 703 31.0
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 2.2e-72 278.1 223 61.4
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 3.3e-68 264.2 262 52.7
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 7.6e-65 253.1 157 78.3
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.6e-54 218.8 952 23.7
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 3.9e-53 214.2 262 49.2
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.3e-45 188.3 202 52.0
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 8.8e-45 186.4 192 50.0
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 3.7e-43 181.0 208 50.5
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 8.2e-43 179.9 198 51.5
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.2e-41 176.0 119 73.1
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 6.7e-37 160.2 109 71.6
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.1e-36 159.5 928 22.5
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.8e-35 154.8 111 72.1
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 2.5e-31 141.7 478 28.2
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 2.1e-30 138.7 103 68.0
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.7e-25 121.7 105 58.1
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.5e-25 120.9 105 58.1
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.2e-24 118.6 378 27.8
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.5e-24 117.1 105 56.2
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.5e-24 116.7 105 56.2
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 3.4e-20 104.8 128 50.8
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 2.0e-17 95.5 96 57.3
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.3e-16 92.8 102 49.0
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.4e-10 70.9 105 41.9
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 3.9e-08 64.7 106 38.7


User provided reference genes

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