Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 2.0e-147 525.8 269 100.0
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 5.7e-139 497.7 269 92.9
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 7.5e-139 497.3 269 93.3
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.4e-137 491.1 269 91.8
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.4e-137 491.1 269 91.8
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.0e-135 485.3 269 90.3
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.1e-134 483.4 269 90.0
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.1e-134 483.4 269 90.0
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 3.3e-134 481.9 269 90.0
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.3e-134 481.9 269 90.7
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.5e-134 480.3 269 90.7
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.1e-133 479.2 269 90.7
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.6e-125 453.0 270 83.7
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 8.3e-122 440.7 272 81.6
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.1e-121 440.3 272 81.2
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.9e-121 439.5 270 82.2
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 5.4e-121 438.0 271 81.5
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 1.2e-120 436.8 269 81.4
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 1.6e-120 436.4 271 81.2
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 2.1e-120 436.0 273 80.2
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 4.6e-120 434.9 269 81.8
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 6.0e-120 434.5 270 80.0
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 1.0e-119 433.7 269 80.3
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 1.3e-119 433.3 271 81.5
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 3.0e-119 432.2 271 79.7
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 3.9e-119 431.8 271 80.8
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 5.1e-119 431.4 270 80.7
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.9e-118 429.5 270 80.7
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 2.5e-118 429.1 272 79.4
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 5.6e-118 427.9 273 78.8
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 5.6e-118 427.9 270 80.4
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 1.8e-116 422.9 270 79.6
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 3.1e-116 422.2 270 79.6
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 8.9e-116 420.6 269 78.4
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 1.2e-115 420.2 272 76.8
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.0e-115 419.5 270 77.0
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.0e-115 419.5 270 76.3
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 2.6e-115 419.1 270 77.0
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.6e-115 419.1 270 77.0
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 3.4e-115 418.7 284 76.1
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 2.9e-114 415.6 272 78.3
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.8e-114 415.2 230 92.2
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 4.9e-114 414.8 270 76.3
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 4.9e-114 414.8 270 75.9
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.4e-113 413.3 272 77.2
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 1.9e-113 412.9 271 76.0
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 3.2e-113 412.1 297 72.1
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 4.1e-113 411.8 270 75.2
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 3.5e-112 408.7 270 75.9
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 1.0e-111 407.1 272 74.6
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.6e-111 404.4 272 75.4
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.6e-111 404.4 272 75.4
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 8.6e-111 404.1 272 75.4
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.1e-110 403.7 271 74.2
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 1.1e-110 403.7 269 73.6
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 1.5e-110 403.3 269 75.8
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.9e-110 402.9 271 74.9
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.9e-110 402.9 271 74.2
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.9e-110 402.9 269 73.6
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 2.5e-110 402.5 271 74.5
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 2.5e-110 402.5 269 74.0
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 3.3e-110 402.1 269 74.3
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 3.3e-110 402.1 270 74.4
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 4.3e-110 401.7 269 74.0
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.6e-110 401.4 280 72.9
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 5.6e-110 401.4 271 75.6
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 7.3e-110 401.0 272 75.4
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 9.6e-110 400.6 269 74.0
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 1.6e-109 399.8 270 73.0
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 2.8e-109 399.1 271 73.1
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 8.1e-109 397.5 271 73.4
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 8.1e-109 397.5 272 72.8
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.1e-108 397.1 283 72.1
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 7.6e-107 391.0 271 72.7
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 1.3e-106 390.2 273 74.0
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 2.9e-106 389.0 305 66.6
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 2.9e-106 389.0 305 66.6
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.4e-105 386.0 265 73.6
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.2e-105 385.6 272 72.8
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 7.1e-105 384.4 270 71.9
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 1.6e-104 383.3 282 69.9
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 6.0e-104 381.3 272 72.4
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 6.0e-104 381.3 329 62.0
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 1.3e-103 380.2 272 71.7
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 2.3e-103 379.4 270 71.9
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 3.0e-103 379.0 270 71.9
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 6.6e-103 377.9 236 80.5
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 4.3e-102 375.2 270 70.4
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 7.3e-102 374.4 272 69.5
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 7.3e-102 374.4 272 69.5
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 2.1e-101 372.9 295 66.1
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 2.1e-101 372.9 270 71.5
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 4.8e-101 371.7 270 71.1
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 4.8e-101 371.7 270 69.6
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 6.2e-101 371.3 271 69.4
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 1.4e-100 370.2 256 75.4
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.4e-100 370.2 286 68.5
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 1.8e-100 369.8 230 80.9
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 1.8e-100 369.8 272 71.3
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 2.4e-100 369.4 275 70.5
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 4.0e-100 368.6 270 70.7
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 9.0e-100 367.5 230 80.4
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 9.0e-100 367.5 317 62.5
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 2.6e-99 365.9 270 68.5
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 2.6e-99 365.9 342 58.2
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.4e-99 365.5 273 67.4
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.3e-98 363.6 272 70.2
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 3.8e-98 362.1 272 69.9
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 3.8e-98 362.1 272 66.5
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 3.8e-98 362.1 292 63.0
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 4.9e-98 361.7 273 68.5
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 8.4e-98 360.9 275 70.9
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.1e-97 360.5 261 70.5
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 2.1e-96 356.3 272 69.9
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 3.5e-96 355.5 253 69.6
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 4.6e-96 355.1 276 68.1
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 6.0e-96 354.8 232 78.9
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 5.8e-91 338.2 273 66.3
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 5.8e-91 338.2 272 64.3
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 7.6e-91 337.8 273 65.9
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 4.2e-89 332.0 263 68.4
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 4.2e-89 332.0 331 56.5
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 6.7e-87 324.7 278 62.6
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 8.7e-87 324.3 266 64.3
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 1.9e-86 323.2 234 68.4
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.8e-85 319.3 272 62.1
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 1.1e-84 317.4 241 68.0
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 5.3e-84 315.1 230 69.1
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 2.6e-83 312.8 180 91.7
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 7.1e-81 304.7 196 78.1
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 1.2e-80 303.9 337 52.2
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 6.0e-80 301.6 231 68.8
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 3.9e-79 298.9 358 50.8
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 4.3e-78 295.4 270 61.1
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 2.8e-77 292.7 266 59.0
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.4e-76 289.7 284 57.4
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 6.9e-76 288.1 174 82.2
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 1.3e-74 283.9 233 66.5
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.7e-74 283.5 289 55.7
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 3.7e-69 265.8 267 56.9
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 4.5e-67 258.8 199 68.8
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 2.2e-66 256.5 270 51.9
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 2.1e-64 250.0 227 60.8
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 2.3e-63 246.5 171 69.6
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 3.0e-63 246.1 275 50.5
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 8.8e-63 244.6 260 51.9
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 1.5e-62 243.8 229 58.1
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 3.3e-62 242.7 263 51.7
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 3.3e-62 242.7 260 50.8
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 7.4e-62 241.5 201 63.7
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.3e-58 230.7 160 72.5
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 6.7e-55 218.4 151 72.8
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.2e-53 213.4 125 83.2
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 3.7e-53 212.6 162 69.1
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 3.1e-52 209.5 161 63.4
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 3.6e-48 196.1 169 62.1
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 6.1e-48 195.3 257 48.6
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 2.3e-47 193.4 131 71.8
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 6.7e-47 191.8 235 48.5
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.7e-45 187.2 211 49.3
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 2.8e-45 186.4 150 66.0
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 7.0e-44 181.8 231 46.8
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.1e-44 181.4 200 50.5
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 2.3e-39 166.8 133 66.2
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.0e-34 149.1 181 45.9
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 8.6e-34 148.3 139 56.8
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 4.2e-33 146.0 272 40.1
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.0e-31 141.4 162 48.8
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 7.0e-28 128.6 91 69.2
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 2.9e-26 123.2 88 69.3
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 5.0e-26 122.5 149 53.0
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 6.8e-23 112.1 71 73.2
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.4e-20 104.4 68 73.5
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 2.0e-19 100.5 182 38.5
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 2.7e-19 100.1 74 68.9
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 2.6e-14 83.6 74 59.5
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 1.2e-08 64.7 41 73.2
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.6e-08 64.3 42 73.8
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.2e-06 58.2 138 34.1
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.5e-06 57.8 34 79.4
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 3.4e-06 56.6 122 34.4


User provided reference genes

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