Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib132G0508 Durio zibethinus HOM05D005082 ORTHO05D006474 1.7e-238 828.9 418 100.0
Thecc.02G148100 Theobroma cacao HOM05D005082 ORTHO05D006474 2.3e-187 659.1 350 92.6
Duzib248G1564 Durio zibethinus HOM05D005082 ORTHO05D006474 5.7e-186 654.4 350 92.0
Gohir.D01G012800 Gossypium hirsutum HOM05D005082 ORTHO05D006474 2.2e-182 642.5 350 90.3
Gohir.A01G011600 Gossypium hirsutum HOM05D005082 ORTHO05D006474 1.9e-181 639.4 350 89.7
Gorai.002G014600 Gossypium raimondii HOM05D005082 ORTHO05D006474 5.2e-179 631.3 344 89.8
PGR042G3506 Punica granatum HOM05D005082 ORTHO05D006474 2.5e-173 612.5 350 84.9
Ciclev10028098m.g Citrus clementina HOM05D005082 ORTHO05D006474 2.1e-172 609.4 350 85.4
CiPaw.05G095000 Carya illinoinensis HOM05D005082 ORTHO05D006474 2.7e-172 609.0 350 84.3
Dinv14185 Davidia involucrata HOM05D005082 ORTHO05D006474 1.7e-169 599.7 356 82.6
Cfa005396 Carpinus fangiana HOM05D005082 ORTHO05D006474 2.2e-169 599.4 350 83.4
Eucgr.H05005 Eucalyptus grandis HOM05D005082 ORTHO05D006474 5.4e-168 594.7 350 81.4
GSVIVG01023855001 Vitis vinifera HOM05D005082 ORTHO05D006474 5.4e-168 594.7 350 82.3
ClCG02G003240 Citrullus lanatus HOM05D005082 ORTHO05D006474 7.0e-168 594.3 344 83.4
QL11p056821 Quercus lobata HOM05D005082 ORTHO05D006474 7.0e-168 594.3 349 83.7
Manes.02G091600 Manihot esculenta HOM05D005082 ORTHO05D006474 1.2e-167 593.6 350 83.7
MD05G1011800 Malus domestica HOM05D005082 ORTHO05D006474 2.0e-167 592.8 350 81.4
RcHm_v2.0_Chr6g0277491 Rosa chinensis HOM05D005082 ORTHO05D006474 2.7e-167 592.4 350 81.4
CsaV3_7G002150 Cucumis sativus L. HOM05D005082 ORTHO05D006474 4.5e-167 591.7 345 82.9
MD10G1011800 Malus domestica HOM05D005082 ORTHO05D006474 5.9e-167 591.3 351 82.9
Potri.009G169700 Populus trichocarpa HOM05D005082 ORTHO05D006474 5.9e-167 591.3 350 82.6
Prupe.8G016800 Prunus persica HOM05D005082 ORTHO05D006474 5.9e-167 591.3 350 81.4
Sed0020521 Sechium edule HOM05D005082 ORTHO05D006474 2.3e-166 589.3 344 82.6
TAR628G0288 Trochodendron aralioides HOM05D005082 ORTHO05D006474 3.8e-166 588.6 362 79.6
Cpa.g.c29182.1 Carica papaya HOM05D005082 ORTHO05D006474 8.6e-166 587.4 350 82.3
MELO3C015693.2 Cucumis melo HOM05D005082 ORTHO05D006474 8.6e-166 587.4 345 82.0
Lj5C170T16 Lonicera japonica HOM05D005082 ORTHO05D006474 1.1e-165 587.0 352 80.1
Sabra04G0140300 Salix brachista HOM05D005082 ORTHO05D006474 1.9e-165 586.3 350 81.7
Atru.BG.54.p Acer truncatum HOM05D005082 ORTHO05D006474 3.6e-164 582.0 338 82.8
COL.COLO4_03850 Corchorus olitorius HOM05D005082 ORTHO05D006474 8.0e-164 580.9 350 83.7
Oeu006114.1 Olea europaea HOM05D005082 ORTHO05D006474 1.0e-163 580.5 348 79.0
FAN24G2999 Fragaria x ananassa HOM05D005082 ORTHO05D006474 2.6e-162 575.9 346 80.1
FAN20G1299 Fragaria x ananassa HOM05D005082 ORTHO05D006474 3.4e-162 575.5 346 79.8
AL8G41310 Arabidopsis lyrata HOM05D005082 ORTHO05D006474 7.5e-162 574.3 351 79.8
AT5G64050 Arabidopsis thaliana HOM05D005082 ORTHO05D006474 9.8e-162 573.9 351 79.8
THA.LOC104800058 Tarenaya hassleriana HOM05D005082 ORTHO05D006474 9.8e-162 573.9 352 79.8
Rhsim04G0008200 Rhododendron simsii HOM05D005082 ORTHO05D006474 3.7e-161 572.0 369 75.3
Sp2g27120 Schrenkiella parvula HOM05D005082 ORTHO05D006474 3.7e-161 572.0 351 79.5
Actinidia20586 Actinidia chinensis HOM05D005082 ORTHO05D006474 1.8e-160 569.7 351 79.5
Carub.0008s2483 Capsella rubella HOM05D005082 ORTHO05D006474 1.8e-160 569.7 351 79.8
ATR0605G166 Amborella trichopoda HOM05D005082 ORTHO05D006474 2.4e-160 569.3 350 78.9
Glyma.03G097900 Glycine max HOM05D005082 ORTHO05D006474 2.4e-160 569.3 347 78.7
VMungo0331G1808 Vigna mungo HOM05D005082 ORTHO05D006474 2.4e-160 569.3 347 78.4
TWI59G1375 Tripterygium wilfordii HOM05D005082 ORTHO05D006474 3.2e-160 568.9 347 80.7
Dinv41859 Davidia involucrata HOM05D005082 ORTHO05D006474 4.1e-160 568.5 323 85.1
BcaB02g09792 Brassica carinata HOM05D005082 ORTHO05D006474 5.4e-160 568.2 351 79.2
Aa31LG1G17860 Aethionema arabicum HOM05D005082 ORTHO05D006474 1.2e-159 567.0 346 79.5
CARHR277960 Cardamine hirsuta HOM05D005082 ORTHO05D006474 2.7e-159 565.8 351 78.3
FAN15G2332 Fragaria x ananassa HOM05D005082 ORTHO05D006474 3.5e-159 565.5 357 77.0
FAN27G0598 Fragaria x ananassa HOM05D005082 ORTHO05D006474 3.5e-159 565.5 357 77.0
Phvul.010G038400 Phaseolus vulgaris HOM05D005082 ORTHO05D006474 3.5e-159 565.5 347 78.1
BcaC01g02661 Brassica carinata HOM05D005082 ORTHO05D006474 5.9e-159 564.7 351 78.6
A06p30760 Brassica napus HOM05D005082 ORTHO05D006474 5.9e-159 564.7 351 78.6
C03p62220 Brassica napus HOM05D005082 ORTHO05D006474 5.9e-159 564.7 351 78.6
BolC3t18485H Brassica oleracea HOM05D005082 ORTHO05D006474 3.0e-158 562.4 351 78.3
Hund06352 Selenicereus undatus HOM05D005082 ORTHO05D006474 3.0e-158 562.4 368 75.0
Aqoxy6G02995 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 1.5e-157 560.1 350 77.7
Glyma.07G124000 Glycine max HOM05D005082 ORTHO05D006474 1.5e-157 560.1 344 78.2
PSO210G0895 Papaver somniferum HOM05D005082 ORTHO05D006474 1.9e-157 559.7 344 79.1
PSO675G0919 Papaver somniferum HOM05D005082 ORTHO05D006474 7.3e-157 557.8 344 79.1
EL10Ac9g21557 Beta vulgaris HOM05D005082 ORTHO05D006474 1.6e-156 556.6 372 72.6
arahy.Tifrunner.gnm1.ann1.44ERQ5 Arachis hypogaea HOM05D005082 ORTHO05D006474 2.1e-156 556.2 368 72.8
SalBow1G4726 Salvia bowleyana HOM05D005082 ORTHO05D006474 2.1e-156 556.2 347 76.9
Ca_25889_v3 Cicer arietinum L. HOM05D005082 ORTHO05D006474 3.6e-156 555.4 347 74.9
arahy.Tifrunner.gnm1.ann1.M18VWQ Arachis hypogaea HOM05D005082 ORTHO05D006474 8.0e-156 554.3 368 72.6
MBI01_g28404_MAGBIO Magnolia biondii HOM05D005082 ORTHO05D006474 1.4e-155 553.5 409 69.2
Lj3g0023171 Lotus japonicus HOM05D005082 ORTHO05D006474 4.0e-155 552.0 347 76.1
CDE06G2564 Ceratophyllum demersum HOM05D005082 ORTHO05D006474 6.8e-155 551.2 350 76.0
Migut.B00003 Erythranthe guttata HOM05D005082 ORTHO05D006474 6.8e-155 551.2 351 76.9
Thhalv10003868m.g Eutrema salsugineum HOM05D005082 ORTHO05D006474 6.8e-155 551.2 378 73.3
Cc09_g10910 Coffea canephora HOM05D005082 ORTHO05D006474 1.2e-154 550.4 347 75.8
vmacro16288 Vaccinium macrocarpon HOM05D005082 ORTHO05D006474 1.2e-154 550.4 407 68.3
BraA06t26018Z Brassica rapa HOM05D005082 ORTHO05D006474 1.5e-154 550.1 359 75.5
MSTRG.16959 Avicennia marina HOM05D005082 ORTHO05D006474 3.4e-154 548.9 347 74.9
Nitab4.5_0001220g0040 Nicotiana tabacum HOM05D005082 ORTHO05D006474 3.4e-154 548.9 346 77.2
Lalb_Chr12g0210191 Lupinus albus HOM05D005082 ORTHO05D006474 9.8e-154 547.4 348 76.4
AUR62010207 Chenopodium quinoa HOM05D005082 ORTHO05D006474 2.2e-153 546.2 373 71.6
AUR62013197 Chenopodium quinoa HOM05D005082 ORTHO05D006474 2.9e-153 545.8 346 76.0
Ah.01g017700 Amaranthus hybridus HOM05D005082 ORTHO05D006474 1.4e-152 543.5 350 75.1
ECA233G3220 Erigeron canadensis HOM05D005082 ORTHO05D006474 2.4e-152 542.7 340 76.2
Peaxi162Scf00362g00137 Petunia axillaris HOM05D005082 ORTHO05D006474 2.4e-152 542.7 346 76.3
Medtr8g009900 Medicago truncatula HOM05D005082 ORTHO05D006474 5.4e-152 541.6 347 73.8
Lalb_Chr07g0194811 Lupinus albus HOM05D005082 ORTHO05D006474 7.0e-152 541.2 347 75.2
HanXRQChr14g0455171 Helianthus annuus HOM05D005082 ORTHO05D006474 2.0e-151 539.7 340 75.6
CAN.G1645.8 Capsicum annuum HOM05D005082 ORTHO05D006474 3.0e-150 535.8 346 74.9
Solyc01g112290.4 Solanum lycopersicum HOM05D005082 ORTHO05D006474 8.6e-150 534.3 346 74.9
Sopen01g054400 Solanum pennellii HOM05D005082 ORTHO05D006474 1.9e-149 533.1 346 74.6
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 4.3e-149 531.9 343 74.1
Os02g0121000 Oryza sativa ssp. japonica HOM05D005082 ORTHO05D006474 4.7e-148 528.5 338 76.0
TPR.G17355 Trifolium pratense HOM05D005082 ORTHO05D006474 4.7e-148 528.5 385 67.3
Lsat_1_v5_gn_8_119500 Lactuca sativa HOM05D005082 ORTHO05D006474 2.3e-147 526.2 341 73.9
DCAR_006224 Daucus carota HOM05D005082 ORTHO05D006474 5.2e-147 525.0 350 73.7
DCAR_001519 Daucus carota HOM05D005082 ORTHO05D006474 1.2e-143 513.8 344 70.9
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 1.0e-142 510.8 326 75.8
Zm00001eb208250 Zea mays HOM05D005082 ORTHO05D006474 1.1e-141 507.3 324 75.0
Haze_01956 Corylus avellana HOM05D005082 ORTHO05D006474 3.3e-141 505.8 350 74.0
Zm00001eb230310 Zea mays HOM05D005082 ORTHO05D006474 2.8e-140 502.7 334 74.0
SEGI_01300 Sequoiadendron giganteum HOM05D005082 ORTHO05D006474 1.8e-139 500.0 344 69.8
Sc08g0002050 Simmondsia chinensis HOM05D005082 ORTHO05D006474 3.6e-132 475.7 295 79.0
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 2.4e-128 463.0 354 64.7
Mapoly0005s0181 Marchantia polymorpha HOM05D005082 ORTHO05D006474 4.2e-128 462.2 351 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3203 Anthoceros agrestis HOM05D005082 ORTHO05D006474 1.7e-126 456.8 351 61.3
Nitab4.5_0010601g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 2.9e-121 439.5 355 64.2
Psat4g215760 Pisum sativum HOM05D005082 ORTHO05D006474 3.2e-120 436.0 325 67.7
Sed0003916 Sechium edule HOM05D005082 ORTHO05D006474 7.9e-119 431.4 242 88.0
Pp3c1_10010 Physcomitrium patens HOM05D005082 ORTHO05D006474 3.9e-118 429.1 335 61.5
CBR_g25940 Chara braunii HOM05D005082 ORTHO05D006474 1.3e-116 424.1 349 58.7
SMO134G0063 Selaginella moellendorffii HOM05D005082 ORTHO05D006474 2.1e-116 423.3 345 61.2
CSS0015047 Camellia sinensis var. sinensis HOM05D005082 ORTHO05D006474 7.1e-104 381.7 242 78.9
PRCOL_00001874 Prasinoderma coloniale HOM05D005082 ORTHO05D006474 8.7e-102 374.8 346 55.5
Cre07.g313700 Chlamydomonas reinhardtii HOM05D005082 ORTHO05D006474 3.3e-101 372.9 327 53.8
Atru.chr5.3580 Acer truncatum HOM05D005082 ORTHO05D006474 8.7e-94 348.2 187 88.8
FvH4_2g14910 Fragaria vesca HOM05D005082 ORTHO05D006474 1.5e-93 347.4 200 84.5
MCO11G616 Micromonas commoda HOM05D005082 ORTHO05D006474 9.1e-91 338.2 327 51.4
QL04p064927 Quercus lobata HOM05D005082 ORTHO05D006474 2.0e-90 337.0 202 83.2
Nitab4.5_0005317g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 2.4e-83 313.5 200 76.0
Lj9C409G5 Lonicera japonica HOM05D005082 ORTHO05D006474 4.2e-72 276.2 147 91.2
Lj9C409G6 Lonicera japonica HOM05D005082 ORTHO05D006474 1.8e-67 260.8 189 69.3
HanXRQChr14g0432441 Helianthus annuus HOM05D005082 ORTHO05D006474 1.7e-49 201.1 109 89.9
HPP92_019666 Vanilla planifolia HOM05D005082 ORTHO05D006474 3.6e-47 193.4 207 51.2
CSS0018221 Camellia sinensis var. sinensis HOM05D005082 ORTHO05D006474 1.2e-45 188.3 119 73.9
PGR142G3202 Punica granatum HOM05D005082 ORTHO05D006474 1.5e-45 188.0 124 72.6
PGR004G1860 Punica granatum HOM05D005082 ORTHO05D006474 3.4e-45 186.8 124 71.8
SGA_v2.0_scaffold104G30258 Striga asiatica HOM05D005082 ORTHO05D006474 8.3e-44 182.2 144 63.9
Duzib052G0849 Durio zibethinus HOM05D005082 ORTHO05D006474 6.4e-36 156.0 146 62.3
Haze_26742 Corylus avellana HOM05D005082 ORTHO05D006474 1.0e-33 148.7 315 33.7
RcHm_v2.0_Chr2g0162471 Rosa chinensis HOM05D005082 ORTHO05D006474 1.1e-30 138.7 120 64.2
Aqoxy144s004 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 3.4e-29 133.7 299 29.4
FAN04G1942 Fragaria x ananassa HOM05D005082 ORTHO05D006474 8.3e-28 129.0 245 35.1
Pp3c2_37890 Physcomitrium patens HOM05D005082 ORTHO05D006474 4.1e-27 126.7 244 32.8
Zm00001eb428990 Zea mays HOM05D005082 ORTHO05D050782 1.0e-25 122.1 62 93.5
Cfa023769 Carpinus fangiana HOM05D005082 ORTHO05D006474 7.8e-18 95.9 146 34.2
Aa31LG6G3290 Aethionema arabicum HOM05D005082 ORTHO05D006474 3.9e-17 93.6 70 67.1
FAN08G2453 Fragaria x ananassa HOM05D005082 ORTHO05D006474 9.6e-16 89.0 169 34.9
Haze_26758 Corylus avellana HOM05D005082 ORTHO05D006474 2.4e-14 84.3 185 31.4
SalBow6G7034 Salvia bowleyana HOM05D005082 ORTHO05D050782 3.2e-11 73.9 45 75.6
Lsat_1_v5_gn_8_156340 Lactuca sativa HOM05D005082 ORTHO05D006474 2.7e-10 70.9 59 49.2
FAN18G1553 Fragaria x ananassa HOM05D005082 ORTHO05D006474 1.7e-09 68.2 72 51.4
arahy.Tifrunner.gnm1.ann1.ZZ08SY Arachis hypogaea HOM05D005082 ORTHO05D084735 1.1e-06 58.9 44 54.5


User provided reference genes

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