Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib128G1625 Durio zibethinus HOM05D003508 ORTHO05D004579 1.9e-43 178.7 87 100.0
Thecc.10G106000 Theobroma cacao HOM05D003508 ORTHO05D004579 3.2e-30 134.8 75 86.7
COL.COLO4_24552 Corchorus olitorius HOM05D003508 ORTHO05D004579 1.6e-29 132.5 75 85.3
Duzib106G0726 Durio zibethinus HOM05D003508 ORTHO05D004579 2.1e-29 132.1 75 82.7
Cfa010322 Carpinus fangiana HOM05D003508 ORTHO05D004579 4.3e-27 124.4 75 76.0
Rhsim03G0099400 Rhododendron simsii HOM05D003508 ORTHO05D004579 4.3e-27 124.4 75 78.7
Oeu026584.1 Olea europaea HOM05D003508 ORTHO05D004579 9.5e-27 123.2 75 74.7
Haze_03293 Corylus avellana HOM05D003508 ORTHO05D004579 1.2e-26 122.9 75 74.7
Nn6g34927 Nelumbo nucifera HOM05D003508 ORTHO05D004579 2.8e-26 121.7 74 78.4
Hma1.2p1_0356F.1_g134090 Hydrangea macrophylla HOM05D003508 ORTHO05D004579 3.6e-26 121.3 73 74.0
CANSAT56G3087 Cannabis sativa HOM05D003508 ORTHO05D004579 6.2e-26 120.6 75 76.0
CiPaw.13G040400 Carya illinoinensis HOM05D003508 ORTHO05D004579 6.2e-26 120.6 75 73.3
Cc02_g09750 Coffea canephora HOM05D003508 ORTHO05D004579 8.1e-26 120.2 75 72.0
Phvul.007G021200 Phaseolus vulgaris HOM05D003508 ORTHO05D004579 1.1e-25 119.8 75 73.3
Gohir.A13G010700 Gossypium hirsutum HOM05D003508 ORTHO05D004579 1.4e-25 119.4 75 77.3
Gohir.D13G011400 Gossypium hirsutum HOM05D003508 ORTHO05D004579 1.8e-25 119.0 75 76.0
TAR633G0880 Trochodendron aralioides HOM05D003508 ORTHO05D004579 2.3e-25 118.6 75 73.3
CAN.G645.2 Capsicum annuum HOM05D003508 ORTHO05D004579 3.1e-25 118.2 74 71.6
CSS0009164 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 5.2e-25 117.5 75 73.3
CSS0049709 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 5.2e-25 117.5 75 73.3
Cpa.g.sc183.13 Carica papaya HOM05D003508 ORTHO05D004579 5.2e-25 117.5 76 76.3
PGR044G1695 Punica granatum HOM05D003508 ORTHO05D004579 5.2e-25 117.5 75 72.0
Rhsim03G0099000 Rhododendron simsii HOM05D003508 ORTHO05D004579 6.8e-25 117.1 75 77.3
MSTRG.27535 Avicennia marina HOM05D003508 ORTHO05D004579 8.9e-25 116.7 75 68.0
Glyma.10G279800 Glycine max HOM05D003508 ORTHO05D004579 8.9e-25 116.7 75 73.3
Lalb_Chr21g0309221 Lupinus albus HOM05D003508 ORTHO05D004579 8.9e-25 116.7 75 73.3
Nitab4.5_0001437g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 8.9e-25 116.7 75 70.7
VMungo0720G2493 Vigna mungo HOM05D003508 ORTHO05D004579 8.9e-25 116.7 73 72.6
Glyma.20G109900 Glycine max HOM05D003508 ORTHO05D004579 1.2e-24 116.3 75 73.3
Haze_01394 Corylus avellana HOM05D003508 ORTHO05D004579 1.5e-24 115.9 73 71.2
Eucgr.J00991 Eucalyptus grandis HOM05D003508 ORTHO05D004579 1.5e-24 115.9 75 70.7
Gorai.013G012400 Gossypium raimondii HOM05D003508 ORTHO05D004579 1.5e-24 115.9 75 74.7
Lj5g0024073 Lotus japonicus HOM05D003508 ORTHO05D004579 2.0e-24 115.5 73 72.6
Lalb_Chr06g0166461 Lupinus albus HOM05D003508 ORTHO05D004579 2.0e-24 115.5 75 72.0
TPR.G2474 Trifolium pratense HOM05D003508 ORTHO05D004579 2.0e-24 115.5 75 69.3
vmacro10305 Vaccinium macrocarpon HOM05D003508 ORTHO05D004579 2.0e-24 115.5 75 72.0
Actinidia34720 Actinidia chinensis HOM05D003508 ORTHO05D004579 2.6e-24 115.2 75 73.3
arahy.Tifrunner.gnm1.ann1.Q6BHJ0 Arachis hypogaea HOM05D003508 ORTHO05D004579 2.6e-24 115.2 75 70.7
ECA238G0717 Erigeron canadensis HOM05D003508 ORTHO05D004579 2.6e-24 115.2 75 73.3
MBI16_g39317_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 2.6e-24 115.2 74 66.2
Medtr1g112230 Medicago truncatula HOM05D003508 ORTHO05D004579 2.6e-24 115.2 75 69.3
Lalb_Chr02g0146341 Lupinus albus HOM05D003508 ORTHO05D004579 3.4e-24 114.8 75 72.0
Peaxi162Scf00173g00046 Petunia axillaris HOM05D003508 ORTHO05D004579 4.4e-24 114.4 75 69.3
SalBow6G1879 Salvia bowleyana HOM05D003508 ORTHO05D004579 4.4e-24 114.4 75 69.3
Actinidia06698 Actinidia chinensis HOM05D003508 ORTHO05D004579 7.5e-24 113.6 75 69.3
Ca_25671_v3 Cicer arietinum L. HOM05D003508 ORTHO05D004579 7.5e-24 113.6 75 69.3
Oeu025589.3 Olea europaea HOM05D003508 ORTHO05D004579 7.5e-24 113.6 75 69.3
Lj3A928T54 Lonicera japonica HOM05D003508 ORTHO05D004579 9.9e-24 113.2 75 73.3
Psat6g231280 Pisum sativum HOM05D003508 ORTHO05D004579 9.9e-24 113.2 75 68.0
Sopen04g004800 Solanum pennellii HOM05D003508 ORTHO05D004579 9.9e-24 113.2 75 65.3
arahy.Tifrunner.gnm1.ann1.Y4RU6H Arachis hypogaea HOM05D003508 ORTHO05D004579 1.3e-23 112.8 73 69.9
Nitab4.5_0000691g0130 Nicotiana tabacum HOM05D003508 ORTHO05D004579 1.3e-23 112.8 75 69.3
Rhsim09G0142500 Rhododendron simsii HOM05D003508 ORTHO05D004579 1.3e-23 112.8 75 69.3
Dinv09607 Davidia involucrata HOM05D003508 ORTHO05D004579 2.9e-23 111.7 75 72.0
Nitab4.5_0005622g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 4.9e-23 110.9 70 71.4
Hund14639 Selenicereus undatus HOM05D003508 ORTHO05D004579 4.9e-23 110.9 75 69.3
Actinidia36696 Actinidia chinensis HOM05D003508 ORTHO05D004579 6.4e-23 110.5 75 72.0
Potri.010G237900 Populus trichocarpa HOM05D003508 ORTHO05D004579 6.4e-23 110.5 75 74.7
PGSC0003DMG400016014 Solanum tuberosum HOM05D003508 ORTHO05D004579 6.4e-23 110.5 75 64.0
Aqoxy4G02791 Aquilegia oxysepala HOM05D003508 ORTHO05D004579 8.3e-23 110.2 75 65.3
Lsat_1_v5_gn_2_104600 Lactuca sativa HOM05D003508 ORTHO05D004579 8.3e-23 110.2 75 70.7
MBI17_g42676_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 8.3e-23 110.2 74 63.5
Nitab4.5_0003927g0020 Nicotiana tabacum HOM05D003508 ORTHO05D004579 8.3e-23 110.2 73 68.5
HanXRQChr11g0342191 Helianthus annuus HOM05D003508 ORTHO05D004579 1.1e-22 109.8 77 70.1
GSVIVG01011287001 Vitis vinifera HOM05D003508 ORTHO05D004579 1.9e-22 109.0 75 70.7
Potri.008G021100 Populus trichocarpa HOM05D003508 ORTHO05D004579 2.4e-22 108.6 75 72.0
QL04p046077 Quercus lobata HOM05D003508 ORTHO05D004579 2.4e-22 108.6 74 67.6
Manes.10G058800 Manihot esculenta HOM05D003508 ORTHO05D004579 3.2e-22 108.2 75 72.0
AUR62027288 Chenopodium quinoa HOM05D003508 ORTHO05D004579 4.1e-22 107.8 75 66.7
Sabra08G0014400 Salix brachista HOM05D003508 ORTHO05D004579 4.1e-22 107.8 74 73.0
PGSC0003DMG400023978 Solanum tuberosum HOM05D003508 ORTHO05D004579 4.1e-22 107.8 75 69.3
AUR62007446 Chenopodium quinoa HOM05D003508 ORTHO05D004579 7.1e-22 107.1 75 66.7
DCAR_006338 Daucus carota HOM05D003508 ORTHO05D004579 7.1e-22 107.1 75 70.7
Solyc11g007020.2 Solanum lycopersicum HOM05D003508 ORTHO05D004579 7.1e-22 107.1 75 68.0
Sopen11g002940 Solanum pennellii HOM05D003508 ORTHO05D004579 7.1e-22 107.1 75 68.0
Manes.07G087500 Manihot esculenta HOM05D003508 ORTHO05D004579 9.2e-22 106.7 75 70.7
PSO339G4868 Papaver somniferum HOM05D003508 ORTHO05D004579 9.2e-22 106.7 75 72.0
PSO384G2067 Papaver somniferum HOM05D003508 ORTHO05D004579 9.2e-22 106.7 75 72.0
Peaxi162Scf00519g00710 Petunia axillaris HOM05D003508 ORTHO05D004579 1.2e-21 106.3 73 67.1
CSS0018426 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.6e-21 105.9 73 69.9
TWI63G0607 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 1.6e-21 105.9 75 68.0
EL10Ac5g12977 Beta vulgaris HOM05D003508 ORTHO05D004579 2.1e-21 105.5 75 65.3
Migut.F00911 Erythranthe guttata HOM05D003508 ORTHO05D004579 2.1e-21 105.5 75 66.7
Sp5g08150 Schrenkiella parvula HOM05D003508 ORTHO05D004579 2.7e-21 105.1 75 64.0
Ciclev10015368m.g Citrus clementina HOM05D003508 ORTHO05D004579 6.0e-21 104.0 74 66.2
Hund11567 Selenicereus undatus HOM05D003508 ORTHO05D004579 6.0e-21 104.0 75 61.3
Eucgr.G02693 Eucalyptus grandis HOM05D003508 ORTHO05D004579 1.0e-20 103.2 75 61.3
BcaB02g08480 Brassica carinata HOM05D003508 ORTHO05D004579 2.3e-20 102.1 75 62.7
BcaC02g09078 Brassica carinata HOM05D003508 ORTHO05D004579 2.3e-20 102.1 75 62.7
A04p05510 Brassica napus HOM05D003508 ORTHO05D004579 2.3e-20 102.1 75 62.7
C04p38200 Brassica napus HOM05D003508 ORTHO05D004579 2.3e-20 102.1 75 62.7
C08p29490 Brassica napus HOM05D003508 ORTHO05D004579 2.3e-20 102.1 75 64.0
BolC4t25395H Brassica oleracea HOM05D003508 ORTHO05D004579 2.3e-20 102.1 75 62.7
BolC8t50554H Brassica oleracea HOM05D003508 ORTHO05D004579 2.3e-20 102.1 75 64.0
BraA04t16251Z Brassica rapa HOM05D003508 ORTHO05D004579 2.3e-20 102.1 75 62.7
MD02G1256300 Malus domestica HOM05D003508 ORTHO05D004579 3.0e-20 101.7 75 66.7
MD07G1064100 Malus domestica HOM05D003508 ORTHO05D004579 3.0e-20 101.7 75 66.7
TWI38G0289 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 3.0e-20 101.7 75 65.3
AT3G54250 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 3.9e-20 101.3 75 61.3
A09p47250 Brassica napus HOM05D003508 ORTHO05D004579 3.9e-20 101.3 75 62.7
BraA09t40187Z Brassica rapa HOM05D003508 ORTHO05D004579 5.1e-20 100.9 75 62.7
Sc06g0002320 Simmondsia chinensis HOM05D003508 ORTHO05D004579 6.6e-20 100.5 75 64.0
Thhalv10010411m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 8.6e-20 100.1 75 62.7
Ah.02g117270 Amaranthus hybridus HOM05D003508 ORTHO05D004579 1.5e-19 99.4 75 61.3
Prupe.2G078900 Prunus persica HOM05D003508 ORTHO05D004579 1.5e-19 99.4 75 62.7
SGA_v2.0_scaffold7G04100 Striga asiatica HOM05D003508 ORTHO05D004579 1.5e-19 99.4 76 61.8
CARHR164170 Cardamine hirsuta HOM05D003508 ORTHO05D004579 2.5e-19 98.6 75 61.3
Thhalv10023484m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 2.5e-19 98.6 75 61.3
Lsat_1_v5_gn_0_7601 Lactuca sativa HOM05D003508 ORTHO05D004579 3.3e-19 98.2 75 65.3
AL5G35290 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 4.3e-19 97.8 75 60.0
TAR636G1619 Trochodendron aralioides HOM05D003508 ORTHO05D004579 4.3e-19 97.8 77 68.8
FvH4_7g05610 Fragaria vesca HOM05D003508 ORTHO05D004579 5.6e-19 97.4 75 62.7
Carub.0005s2084 Capsella rubella HOM05D003508 ORTHO05D004579 7.3e-19 97.1 75 58.7
FAN01G1243 Fragaria x ananassa HOM05D003508 ORTHO05D004579 7.3e-19 97.1 75 62.7
FAN03G1980 Fragaria x ananassa HOM05D003508 ORTHO05D004579 7.3e-19 97.1 75 62.7
FAN06G4590 Fragaria x ananassa HOM05D003508 ORTHO05D004579 7.3e-19 97.1 75 62.7
FAN10G3478 Fragaria x ananassa HOM05D003508 ORTHO05D004579 7.3e-19 97.1 75 62.7
HPP92_006808 Vanilla planifolia HOM05D003508 ORTHO05D004579 7.3e-19 97.1 75 57.3
THA.LOC104811335 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 1.6e-18 95.9 74 63.5
unitig_736.g22527 Utricularia gibba HOM05D003508 ORTHO05D004579 1.6e-18 95.9 75 60.0
ClCG05G021710 Citrullus lanatus HOM05D003508 ORTHO05D004579 2.1e-18 95.5 74 63.5
Sed0023449 Sechium edule HOM05D003508 ORTHO05D004579 4.7e-18 94.4 74 62.2
CsaV3_5G035560 Cucumis sativus L. HOM05D003508 ORTHO05D004579 6.2e-18 94.0 74 60.8
CsaV3_7G016180 Cucumis sativus L. HOM05D003508 ORTHO05D004579 6.2e-18 94.0 74 60.8
ATR0081G016 Amborella trichopoda HOM05D003508 ORTHO05D004579 1.4e-17 92.8 75 58.7
Os02g0109100 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 1.4e-17 92.8 74 59.5
RcHm_v2.0_Chr1g0332421 Rosa chinensis HOM05D003508 ORTHO05D004579 2.4e-17 92.0 75 62.7
THA.LOC104824218 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 2.4e-17 92.0 75 61.3
MELO3C012357.2 Cucumis melo HOM05D003508 ORTHO05D004579 3.1e-17 91.7 74 60.8
CDE04G2729 Ceratophyllum demersum HOM05D003508 ORTHO05D004579 8.9e-17 90.1 73 56.2
Zm00001eb056620 Zea mays HOM05D003508 ORTHO05D004579 1.5e-16 89.4 74 59.5
Zm00001eb257840 Zea mays HOM05D003508 ORTHO05D004579 1.5e-16 89.4 74 60.8
SHI21271 Sapria himalayana HOM05D003508 ORTHO05D004579 2.9e-15 85.1 74 54.1
Carub.0004s2070 Capsella rubella HOM05D003508 ORTHO05D004579 7.8e-13 77.0 75 52.0
Aa31sc79G100 Aethionema arabicum HOM05D003508 ORTHO05D004579 3.0e-12 75.1 75 50.7
CARHR133390 Cardamine hirsuta HOM05D003508 ORTHO05D004579 3.0e-12 75.1 75 50.7
Aa31sc26G40 Aethionema arabicum HOM05D003508 ORTHO05D004579 3.9e-12 74.7 75 53.3
AT2G38700 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 5.1e-12 74.3 75 50.7
AL4G36000 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 1.1e-11 73.2 75 50.7
Sp4g21060 Schrenkiella parvula HOM05D003508 ORTHO05D004579 5.6e-11 70.9 75 48.0
Pp3c5_15100 Physcomitrium patens HOM05D003508 ORTHO05D004579 2.1e-10 68.9 73 41.1
Lj2C31T21 Lonicera japonica HOM05D003508 ORTHO05D004579 6.2e-10 67.4 47 70.2
Peaxi162Scf00173g00513 Petunia axillaris HOM05D003508 ORTHO05D004579 2.6e-08 62.0 38 71.1
Mapoly0007s0128 Marchantia polymorpha HOM05D003508 ORTHO05D004579 2.2e-07 58.9 72 38.9
AagrBONN_evm.TU.Sc2ySwM_117.3316 Anthoceros agrestis HOM05D003508 ORTHO05D004579 1.1e-06 56.6 72 37.5


User provided reference genes

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