Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 1.6e-310 1068.5 532 100.0
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 2.4e-282 974.9 592 83.6
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 3.6e-278 961.1 592 82.4
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 5.2e-277 957.2 592 82.1
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.2e-275 951.8 592 81.4
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 3.2e-250 868.2 624 73.7
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 1.6e-246 855.9 595 73.3
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 4.8e-246 854.4 594 73.6
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 3.1e-245 851.7 594 73.4
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.5e-244 849.4 596 72.8
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 5.8e-244 847.4 594 73.1
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 6.5e-243 844.0 592 72.1
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 6.5e-243 844.0 598 72.2
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 8.4e-243 843.6 592 72.1
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.1e-242 843.2 513 81.5
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 1.2e-241 839.7 594 72.2
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 2.7e-241 838.6 592 72.3
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 3.5e-241 838.2 593 72.7
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 3.5e-241 838.2 593 72.3
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 4.6e-241 837.8 597 72.0
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 6.1e-241 837.4 594 71.7
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 3.0e-240 835.1 594 72.6
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.5e-239 832.8 593 72.3
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.6e-238 829.3 593 72.5
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 3.1e-237 825.1 594 70.9
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 9.0e-237 823.5 609 71.1
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 4.5e-236 821.2 593 71.3
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 1.7e-235 819.3 592 71.5
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 3.8e-235 818.1 593 70.8
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 1.1e-234 816.6 594 69.7
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 1.1e-234 816.6 594 71.2
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 3.2e-234 815.1 597 70.9
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 7.2e-234 813.9 594 71.0
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 9.4e-234 813.5 514 78.0
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 1.2e-233 813.1 594 71.2
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 3.6e-233 811.6 566 73.0
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 6.1e-233 810.8 604 68.9
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 1.0e-232 810.1 538 75.3
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 2.3e-232 808.9 604 69.0
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 6.7e-232 807.4 517 78.3
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 6.7e-232 807.4 608 68.3
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 6.7e-232 807.4 608 68.4
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 6.7e-232 807.4 604 68.4
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.1e-231 806.6 608 68.4
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 1.1e-231 806.6 600 70.0
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 2.0e-231 805.8 604 68.5
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 2.5e-231 805.4 604 68.4
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 3.3e-231 805.1 605 68.9
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 9.7e-231 803.5 598 69.9
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 1.3e-230 803.1 605 68.8
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.3e-230 803.1 608 67.9
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 1.3e-230 803.1 611 67.4
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 2.2e-230 802.4 594 68.0
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 8.2e-230 800.4 595 68.9
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 1.1e-229 800.0 604 67.9
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 1.8e-229 799.3 604 68.5
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.4e-229 798.9 566 72.1
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 3.1e-229 798.5 594 69.9
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 9.1e-229 797.0 603 68.0
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 9.1e-229 797.0 604 67.5
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.2e-228 796.6 673 64.2
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 3.4e-228 795.0 598 68.7
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 5.9e-228 794.3 573 70.5
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 1.3e-227 793.1 621 66.2
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.3e-227 793.1 604 67.9
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 2.9e-227 792.0 595 68.9
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 3.8e-227 791.6 601 67.4
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 5.0e-227 791.2 514 77.2
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 5.0e-227 791.2 594 69.0
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 2.5e-226 788.9 548 73.4
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 7.2e-226 787.3 602 67.6
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 9.4e-226 786.9 594 68.4
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 1.2e-225 786.6 595 68.6
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 1.6e-225 786.2 594 68.4
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 2.7e-225 785.4 595 67.6
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 2.7e-225 785.4 595 67.6
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 3.6e-225 785.0 517 76.2
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 4.7e-225 784.6 602 67.8
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 1.0e-224 783.5 595 67.4
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 3.0e-224 781.9 606 66.5
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 5.1e-224 781.2 595 67.2
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 1.1e-223 780.0 514 76.1
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 4.8e-222 774.6 596 68.1
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.4e-221 773.1 594 67.2
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 2.0e-220 769.2 618 65.0
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 2.2e-219 765.8 600 68.7
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 3.8e-219 765.0 505 77.0
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 8.0e-217 757.3 576 67.5
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 3.0e-216 755.4 731 59.1
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 3.0e-216 755.4 593 65.6
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-214 750.0 594 65.7
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 2.4e-213 745.7 514 72.6
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 3.1e-213 745.3 514 72.2
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 5.3e-213 744.6 594 65.3
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 5.3e-213 744.6 518 72.4
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 1.2e-212 743.4 597 65.2
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 2.6e-212 742.3 492 75.2
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 1.8e-208 729.6 518 71.0
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 1.5e-207 726.5 487 75.4
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 2.0e-207 726.1 524 70.6
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 4.8e-206 721.5 589 62.5
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 5.3e-205 718.0 597 63.7
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 3.5e-204 715.3 514 70.2
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.3e-203 713.4 515 69.1
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.5e-202 709.9 517 71.0
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 1.4e-200 703.4 595 62.0
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 4.4e-199 698.4 517 69.6
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 4.8e-198 694.9 516 67.1
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 1.7e-195 686.4 595 62.5
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.5e-194 683.3 531 65.2
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 1.5e-194 683.3 504 67.5
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.4e-192 676.8 527 67.6
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 8.9e-192 674.1 533 65.9
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 7.0e-189 664.5 524 66.6
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 1.3e-182 643.7 579 59.8
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.0e-180 636.3 425 75.8
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 2.8e-177 625.9 526 60.3
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 7.5e-175 617.8 604 56.3
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 4.0e-168 595.5 527 58.4
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 1.1e-160 570.9 489 63.2
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.2e-156 557.4 443 64.8
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 2.4e-149 533.1 507 54.2
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.7e-148 529.6 604 50.3
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 3.4e-143 512.7 442 62.0
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.8e-136 490.3 535 48.4
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 2.7e-132 476.5 531 49.2
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.5e-127 460.7 685 44.4
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 2.6e-127 459.9 323 72.8
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 1.4e-125 454.1 317 73.8
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 5.5e-125 452.2 284 79.6
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 8.7e-123 444.9 339 68.1
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.1e-117 427.9 402 59.5
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.0e-115 419.9 287 73.5
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 2.2e-110 403.7 259 77.6
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 3.0e-107 393.3 424 51.7
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.2e-103 381.3 289 68.2
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 5.9e-103 379.0 257 75.1
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.1e-100 370.5 563 41.4
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 5.7e-90 335.9 306 58.8
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 4.0e-83 313.2 453 42.4
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.8e-81 307.0 190 78.9
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.4e-74 283.1 171 83.0
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.9e-73 279.6 176 76.7
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 8.3e-73 278.9 176 77.8
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 5.9e-71 272.7 211 64.9
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.0e-70 270.4 190 74.2
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 5.8e-66 256.1 157 79.0
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 7.5e-66 255.8 154 80.5
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 4.1e-64 250.0 231 62.3
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 7.0e-64 249.2 153 78.4
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 8.9e-59 232.3 258 49.6
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 4.9e-57 226.5 257 50.6
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 5.2e-51 206.5 130 81.5
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 7.1e-48 196.1 121 77.7
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 4.4e-42 176.8 145 65.5
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.9e-41 174.1 178 52.8
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 1.1e-35 155.6 225 44.9
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 4.0e-35 153.7 124 59.7
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 5.8e-34 149.8 169 55.6
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 1.3e-33 148.7 124 58.9
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 1.3e-33 148.7 124 58.9
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 6.4e-33 146.4 85 81.2
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 6.2e-28 129.8 174 46.6
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 2.7e-23 114.4 68 77.9
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 3.5e-23 114.0 127 50.4
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 4.6e-23 113.6 87 69.0
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 1.1e-21 109.0 71 71.8
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 9.6e-21 105.9 62 74.2
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 1.3e-20 105.5 72 68.1
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 1.8e-19 101.7 132 43.2
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 5.1e-14 83.6 57 68.4
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 1.1e-11 75.9 120 40.0
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 2.4e-11 74.7 120 39.2
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 3.1e-11 74.3 116 40.5
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 4.1e-11 73.9 117 40.2
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 9.0e-11 72.8 117 39.3
Lsat_1_v5_gn_4_30320 Lactuca sativa HOM05D003829 ORTHO05D015515 1.0e-09 69.3 38 84.2
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.8e-09 67.4 40 75.0
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 7.9e-07 59.7 51 58.8
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 2.3e-06 58.2 45 62.2
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 3.0e-06 57.8 45 64.4
BcaC09g50448 Brassica carinata HOM05D015232 ORTHO05D015515 6.7e-06 56.6 45 62.2
C01p25310 Brassica napus HOM05D015232 ORTHO05D015515 6.7e-06 56.6 45 62.2
A10p07150 Brassica napus HOM05D015232 ORTHO05D015515 8.7e-06 56.2 44 63.6
BolC5t30108H Brassica oleracea HOM05D003829 ORTHO05D028154 8.7e-06 56.2 49 59.2


User provided reference genes

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