Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 2298.9 1138 100.0
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1944.9 1182 82.1
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1877.1 1195 79.3
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1741.1 1187 75.3
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1649.0 1043 79.5
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1507.7 1183 65.3
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1506.9 1170 65.5
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1491.1 1192 62.8
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1474.9 1189 63.5
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1468.4 1173 64.1
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1468.4 1174 61.8
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1467.2 1172 63.7
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1451.4 1185 62.6
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1446.8 1179 62.4
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1437.2 1185 62.7
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1434.1 1405 55.1
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1425.6 1213 58.9
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1413.3 1184 61.7
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1397.1 1132 63.7
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1391.7 1191 60.4
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1382.1 1195 60.9
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1378.2 1180 60.2
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1376.3 1198 60.3
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1365.5 1179 59.4
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1365.1 1183 60.0
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1365.1 1173 59.3
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1363.6 1179 59.3
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1353.2 1182 58.6
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1350.9 1187 58.5
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1347.8 1173 58.7
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1347.0 1173 59.0
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1347.0 1179 58.8
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1346.3 1174 58.7
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1340.9 1174 58.6
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1340.1 1188 58.1
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1330.5 1173 58.5
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1327.4 1173 58.0
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1324.3 1173 58.5
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1323.9 1179 57.7
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1322.4 1182 57.2
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1315.4 1180 56.9
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1312.4 1184 56.9
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1308.9 1181 57.5
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1306.6 1170 57.2
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1305.0 1174 57.4
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1302.0 1175 56.4
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1292.7 1170 56.9
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1286.9 1184 56.0
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1285.0 1212 56.8
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1285.0 1172 57.8
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1283.5 1182 56.9
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1282.7 1188 56.6
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1276.2 1173 57.1
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1273.5 1383 51.0
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1255.7 1172 56.7
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1242.3 1186 54.9
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1241.5 1186 54.8
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1240.3 1184 54.4
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1240.3 1219 53.8
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1235.7 1181 54.4
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1234.6 1181 55.2
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1232.6 1180 54.6
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1232.2 1184 54.1
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1229.2 1176 56.3
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1227.2 1176 56.4
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1214.5 1181 53.7
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1212.2 1181 54.5
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1203.3 1170 53.0
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1193.3 1193 53.2
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1190.3 1182 53.0
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1187.6 1185 53.4
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1181.8 1184 53.0
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1176.8 1059 57.7
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1169.1 1134 53.6
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1144.4 1072 56.8
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1133.2 1172 52.0
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1123.2 1141 52.5
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1092.8 715 77.8
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1088.6 1069 53.9
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1077.0 1187 48.8
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 6.1e-299 1031.2 1196 46.2
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 4.4e-297 1025.0 1125 49.9
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 2.2e-296 1022.7 1129 49.0
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 4.1e-295 1018.5 1196 46.5
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.6e-294 1016.5 1216 47.0
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 5.7e-281 971.5 1171 47.3
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 5.4e-279 964.9 1175 44.9
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 2.3e-266 922.9 845 57.5
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 7.8e-254 881.3 761 61.6
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.0e-225 786.9 790 54.1
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 4.3e-220 769.2 1080 42.5
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.6e-196 690.3 752 48.7
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 6.1e-190 669.1 576 58.9
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 2.2e-176 624.0 1194 34.3
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 4.7e-158 563.1 1198 33.6
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 7.8e-153 545.8 461 58.6
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 3.0e-152 543.9 439 64.9
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 5.2e-149 533.1 599 49.6
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.6e-132 477.6 1110 32.1
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 3.3e-127 460.7 389 58.4
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.3e-107 395.6 410 52.7
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 8.4e-107 392.9 851 34.1
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.3e-102 379.0 508 41.1
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 4.6e-97 360.5 287 64.5
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 5.5e-90 337.0 211 81.5
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.7e-89 334.7 420 41.9
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.3e-83 315.8 218 70.2
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 3.8e-67 261.2 183 66.7
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-55 223.0 1093 25.0
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 4.5e-52 211.1 232 50.4
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 2.3e-51 208.8 298 38.6
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 5.2e-40 171.0 176 55.1
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 9.2e-37 160.2 120 66.7
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 1.1e-29 136.7 157 45.9
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.5e-26 126.3 333 31.5
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 2.4e-21 109.0 513 25.1
Cfa022114 Carpinus fangiana HOM05D005978 ORTHO05D007472 4.6e-20 104.8 611 21.3
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 2.1e-17 95.9 355 25.6
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 1.8e-16 92.8 70 61.4
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 2.0e-15 89.4 58 69.0
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 4.4e-15 88.2 126 41.3
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 4.9e-14 84.7 53 69.8
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 1.0e-11 77.0 53 69.8
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 5.6e-10 71.2 54 59.3
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 2.1e-09 69.3 48 60.4
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 3.6e-09 68.6 48 60.4
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 3.1e-08 65.5 48 64.6
SalBow6G5274 Salvia bowleyana HOM05D002462 ORTHO05D002893 2.6e-07 62.4 208 26.0
Ciclev10019462m.g Citrus clementina HOM05D002462 ORTHO05D002893 8.4e-06 57.4 208 26.0


User provided reference genes

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