Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.6e-293 1012.3 616 100.0
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.2e-195 687.2 634 69.6
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.0e-195 686.4 634 69.2
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 9.3e-193 677.6 634 71.0
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.6e-184 650.2 634 70.0
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 3.5e-184 649.0 634 64.0
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.3e-181 640.6 632 66.9
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 1.6e-181 640.2 634 67.7
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 8.1e-181 637.9 631 65.3
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.8e-180 636.7 631 62.0
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 7.6e-179 631.3 632 59.3
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 5.1e-175 618.6 633 64.6
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.6e-173 613.6 631 65.1
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 8.2e-173 611.3 631 61.0
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.0e-170 604.4 632 62.5
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 2.9e-170 602.8 632 60.4
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.1e-169 600.9 634 62.0
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.7e-168 596.3 630 65.2
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 3.9e-167 592.4 631 61.5
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.1e-166 590.9 632 62.3
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.5e-166 590.5 632 63.9
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 2.5e-166 589.7 695 48.9
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 5.7e-166 588.6 634 59.0
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 5.7e-166 588.6 632 65.2
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 4.8e-165 585.5 634 62.9
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.8e-165 585.5 630 64.3
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 6.3e-165 585.1 634 64.2
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 8.2e-165 584.7 634 62.3
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.4e-164 583.9 632 63.9
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.4e-164 583.9 630 64.1
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.4e-164 583.2 632 63.4
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 4.1e-164 582.4 634 56.0
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 4.1e-164 582.4 632 65.5
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 4.1e-164 582.4 630 58.6
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 6.9e-164 581.6 632 63.9
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.5e-163 580.5 633 64.0
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 5.0e-162 575.5 632 62.7
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 1.1e-161 574.3 632 61.9
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.2e-160 570.9 619 64.6
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 4.6e-160 568.9 632 61.7
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.4e-159 567.4 630 63.0
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.0e-159 566.2 634 59.9
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 2.0e-158 563.5 632 62.0
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.0e-158 563.5 632 52.2
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 4.3e-158 562.4 634 61.4
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.3e-157 560.8 632 58.1
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 1.3e-157 560.8 634 60.1
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 2.8e-157 559.7 599 63.8
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 3.7e-157 559.3 631 63.1
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 4.1e-156 555.8 632 61.6
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 3.4e-155 552.7 630 58.9
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.7e-154 550.4 642 56.4
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.9e-154 549.7 518 67.2
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.9e-153 547.0 634 62.3
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 4.2e-153 545.8 614 63.5
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 4.2e-153 545.8 632 51.7
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 9.4e-153 544.7 632 57.8
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.5e-150 537.3 646 56.7
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.5e-150 537.3 625 58.7
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.4e-150 535.8 685 50.7
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 7.4e-150 535.0 657 55.6
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.7e-149 533.9 634 58.5
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.6e-147 527.3 619 61.4
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.6e-147 526.6 624 60.7
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 5.9e-147 525.4 633 59.6
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 2.2e-146 523.5 632 58.2
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.1e-145 521.2 664 56.6
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.9e-145 520.4 632 59.2
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 2.7e-144 516.5 630 58.7
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 8.0e-144 515.0 632 58.9
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-143 514.6 449 67.3
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.2e-142 511.1 632 51.9
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 7.5e-142 508.4 631 58.6
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 9.7e-142 508.1 635 57.3
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.3e-141 505.4 568 58.3
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 8.2e-141 505.0 651 54.2
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.4e-140 504.2 633 58.1
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.8e-140 503.8 669 54.0
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 3.1e-140 503.1 630 58.4
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 5.9e-139 498.8 662 54.8
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.3e-138 497.7 631 57.7
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 3.8e-138 496.1 631 57.4
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.9e-137 493.8 632 57.8
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 4.2e-137 492.7 630 57.9
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 7.2e-137 491.9 631 59.1
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 2.1e-136 490.3 633 56.9
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 4.7e-136 489.2 633 57.2
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 8.8e-135 485.0 630 58.6
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.2e-134 484.6 633 56.9
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.2e-134 484.6 633 55.9
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.5e-134 484.2 630 55.7
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.5e-134 484.2 576 48.8
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.4e-134 482.6 631 55.5
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.3e-133 481.1 466 68.2
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 4.8e-133 479.2 633 56.2
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 4.8e-133 479.2 632 52.7
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 4.1e-132 476.1 630 55.2
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 5.4e-132 475.7 525 58.9
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.5e-131 473.0 631 56.7
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 3.5e-131 473.0 631 53.7
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.3e-130 471.1 563 57.0
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.0e-127 461.5 517 59.6
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.5e-126 457.6 647 54.1
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.1e-124 451.4 613 57.3
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.8e-122 443.0 638 44.7
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.5e-118 431.0 635 47.2
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 5.4e-116 422.5 624 55.0
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 2.0e-110 404.1 634 50.9
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.7e-109 401.0 635 42.5
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.0e-106 390.2 490 47.8
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.3e-103 380.6 639 47.4
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.1e-103 380.2 657 44.0
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 4.0e-103 379.8 613 44.2
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 2.0e-102 377.5 630 41.9
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.7e-101 373.2 477 47.4
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 3.7e-101 373.2 461 44.9
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.0e-98 365.2 635 39.5
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.1e-96 357.5 639 39.6
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 6.4e-93 345.9 462 48.9
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 9.2e-92 342.0 405 60.2
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 2.4e-76 290.8 451 45.9
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 1.4e-71 275.0 341 45.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 6.9e-71 272.7 255 76.9
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 4.5e-70 270.0 242 70.7
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 2.1e-67 261.2 258 69.0
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.6e-65 252.3 454 38.1
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 3.2e-60 237.3 651 41.8
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 2.6e-54 217.6 136 79.4
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 2.5e-49 201.1 199 54.3
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 6.5e-45 186.4 123 75.6
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.2e-44 183.7 355 36.9
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.7e-43 181.0 556 28.4
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 3.1e-39 167.5 123 67.5
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 4.1e-39 167.2 573 32.6
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.2e-35 155.6 217 54.8
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 6.1e-35 153.3 133 61.7
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.0e-33 148.3 139 69.8
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 4.4e-33 147.1 123 62.6
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.3e-32 145.6 248 50.4
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 2.2e-32 144.8 273 42.9
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.0e-30 138.3 123 56.9
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 5.0e-29 133.7 109 63.3
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.5e-28 130.2 97 72.2
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 1.5e-25 122.1 162 48.1
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 5.7e-25 120.2 123 50.4
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-23 115.9 110 56.4
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-23 115.2 95 66.3
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.8e-23 115.2 340 28.2
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 4.4e-17 94.0 71 62.0
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.8e-16 90.5 72 56.9
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.8e-15 88.6 117 61.5
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.4e-15 88.2 51 84.3
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 3.1e-15 87.8 116 44.8
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.4e-15 87.0 51 84.3
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-14 84.7 51 80.4
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 5.9e-14 83.6 72 58.3
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.9e-14 83.6 51 80.4
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.7e-14 83.2 51 80.4
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.7e-14 83.2 51 80.4
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 1.7e-13 82.0 287 27.2
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 1.1e-12 79.3 116 44.0
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 2.8e-11 74.7 90 73.3
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.3e-10 71.6 262 26.0
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 3.0e-10 71.2 76 51.3
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 5.2e-10 70.5 125 35.2
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 5.2e-10 70.5 70 58.6
Lalb_Chr04g0252791 Lupinus albus HOM05D003682 ORTHO05D004224 8.3e-08 63.2 81 42.0
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.4e-07 62.4 56 58.9
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 5.4e-07 60.5 54 59.3
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 7.8e-06 56.6 27 88.9


User provided reference genes

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