Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 5.3e-96 354.4 181 100.0
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 7.0e-56 221.1 181 65.2
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 8.0e-36 154.5 105 70.5
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 8.9e-11 71.2 43 81.4
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 1.5e-10 70.5 60 63.3
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 1.5e-10 70.5 38 89.5
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 2.0e-10 70.1 38 86.8
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 2.0e-10 70.1 38 86.8
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 2.0e-10 70.1 38 86.8
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 2.6e-10 69.7 38 86.8
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 2.6e-10 69.7 38 86.8
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 2.6e-10 69.7 38 86.8
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 2.6e-10 69.7 38 86.8
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 2.6e-10 69.7 38 86.8
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 2.6e-10 69.7 38 86.8
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 3.4e-10 69.3 38 86.8
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 4.4e-10 68.9 38 86.8
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 4.4e-10 68.9 38 86.8
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 4.4e-10 68.9 38 86.8
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 4.4e-10 68.9 38 86.8
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 4.4e-10 68.9 38 86.8
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 4.4e-10 68.9 38 86.8
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 4.4e-10 68.9 38 86.8
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 4.4e-10 68.9 38 86.8
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 4.4e-10 68.9 38 86.8
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 5.8e-10 68.6 38 86.8
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 7.6e-10 68.2 38 84.2
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 7.6e-10 68.2 38 84.2
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 7.6e-10 68.2 38 84.2
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 7.6e-10 68.2 38 84.2
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 7.6e-10 68.2 38 84.2
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 7.6e-10 68.2 38 84.2
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 7.6e-10 68.2 38 84.2
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 1.3e-09 67.4 38 84.2
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.3e-09 67.4 38 86.8
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 1.7e-09 67.0 38 84.2
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 1.7e-09 67.0 38 84.2
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.7e-09 67.0 38 84.2
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.7e-09 67.0 38 84.2
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 1.7e-09 67.0 38 84.2
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.7e-09 67.0 38 86.8
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 1.7e-09 67.0 38 84.2
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 1.7e-09 67.0 38 81.6
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 1.7e-09 67.0 38 84.2
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 1.7e-09 67.0 38 84.2
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 3.8e-09 65.9 38 84.2
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 3.8e-09 65.9 38 84.2
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 8.4e-09 64.7 38 84.2
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 1.9e-08 63.5 36 88.9
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 2.4e-08 63.2 48 70.8
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 3.2e-08 62.8 38 78.9
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 4.2e-08 62.4 38 84.2
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.2e-07 60.8 38 81.6
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 2.1e-07 60.1 41 75.6
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 5.1e-06 55.5 50 58.0
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 8.7e-06 54.7 36 77.8


User provided reference genes

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