Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44276 Davidia involucrata HOM05D006035 ORTHO05D007155 2.6e-71 271.9 137 100.0
Rhsim02G0003100 Rhododendron simsii HOM05D006035 ORTHO05D007155 2.8e-41 172.2 152 61.8
Migut.G00072 Erythranthe guttata HOM05D006035 ORTHO05D007155 3.7e-41 171.8 161 57.8
Cfa015301 Carpinus fangiana HOM05D006035 ORTHO05D007155 4.8e-41 171.4 160 58.1
Oeu042670.1 Olea europaea HOM05D006035 ORTHO05D007155 1.4e-40 169.9 160 58.8
Cc03_g00700 Coffea canephora HOM05D006035 ORTHO05D007155 1.8e-40 169.5 175 56.0
Haze_01313 Corylus avellana HOM05D006035 ORTHO05D007155 1.8e-40 169.5 159 57.9
MD16G1152300 Malus domestica HOM05D006035 ORTHO05D007155 1.8e-40 169.5 157 58.6
RcHm_v2.0_Chr4g0425671 Rosa chinensis HOM05D006035 ORTHO05D007155 1.8e-40 169.5 158 58.9
SGA_v2.0_scaffold64G22102 Striga asiatica HOM05D006035 ORTHO05D007155 1.8e-40 169.5 161 55.3
DCAR_030462 Daucus carota HOM05D006035 ORTHO05D007155 4.1e-40 168.3 159 57.2
Oeu038775.1 Olea europaea HOM05D006035 ORTHO05D007155 4.1e-40 168.3 156 58.3
Duzib212G0974 Durio zibethinus HOM05D006035 ORTHO05D007155 5.3e-40 167.9 160 55.6
Oeu038777.1 Olea europaea HOM05D006035 ORTHO05D007155 5.3e-40 167.9 155 58.7
COL.COLO4_34598 Corchorus olitorius HOM05D006035 ORTHO05D007155 6.9e-40 167.5 160 56.9
Thecc.04G302600 Theobroma cacao HOM05D006035 ORTHO05D007155 1.5e-39 166.4 164 55.5
FvH4_4g19970 Fragaria vesca HOM05D006035 ORTHO05D007155 2.6e-39 165.6 151 59.6
Hma1.2p1_0013F.1_g008420 Hydrangea macrophylla HOM05D006035 ORTHO05D007155 2.6e-39 165.6 168 56.5
QL06p012626 Quercus lobata HOM05D006035 ORTHO05D007155 2.6e-39 165.6 157 56.7
Rhsim04G0240200 Rhododendron simsii HOM05D006035 ORTHO05D007155 2.6e-39 165.6 159 57.9
Sabra10G0113300 Salix brachista HOM05D006035 ORTHO05D007155 4.5e-39 164.9 168 55.4
CiPaw.01G137000 Carya illinoinensis HOM05D006035 ORTHO05D007155 5.9e-39 164.5 162 58.0
TWI09G1568 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 5.9e-39 164.5 155 56.1
CSS0043064 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.0e-38 163.7 160 54.4
Ciclev10006076m.g Citrus clementina HOM05D006035 ORTHO05D007155 1.0e-38 163.7 163 55.8
Lalb_Chr13g0298531 Lupinus albus HOM05D006035 ORTHO05D007155 3.8e-38 161.8 157 51.0
vmacro08029 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 5.0e-38 161.4 156 57.7
CSS0012943 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 6.5e-38 161.0 166 56.0
Lj1g0017970 Lotus japonicus HOM05D006035 ORTHO05D007155 6.5e-38 161.0 160 51.9
MD13G1151300 Malus domestica HOM05D006035 ORTHO05D007155 6.5e-38 161.0 157 56.1
TWI53G1140 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 6.5e-38 161.0 153 53.6
Gohir.D09G234900 Gossypium hirsutum HOM05D006035 ORTHO05D007155 8.5e-38 160.6 162 58.0
Potri.008G103900 Populus trichocarpa HOM05D006035 ORTHO05D007155 8.5e-38 160.6 168 54.8
Sed0018605 Sechium edule HOM05D006035 ORTHO05D007155 8.5e-38 160.6 155 57.4
Potri.010G146900 Populus trichocarpa HOM05D006035 ORTHO05D007155 1.1e-37 160.2 168 54.8
Duzib151G0686 Durio zibethinus HOM05D006035 ORTHO05D007155 1.4e-37 159.8 157 55.4
Gorai.006G257800 Gossypium raimondii HOM05D006035 ORTHO05D007155 1.4e-37 159.8 162 58.0
PGR004G1138 Punica granatum HOM05D006035 ORTHO05D007155 1.4e-37 159.8 162 52.5
Atru.chr4.3040 Acer truncatum HOM05D006035 ORTHO05D007155 2.5e-37 159.1 162 55.6
CSS0047932 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 2.5e-37 159.1 166 55.4
VMungo1215G2980 Vigna mungo HOM05D006035 ORTHO05D007155 3.2e-37 158.7 156 51.9
Gohir.A09G234100 Gossypium hirsutum HOM05D006035 ORTHO05D007155 4.2e-37 158.3 162 56.8
Gohir.A10G173200 Gossypium hirsutum HOM05D006035 ORTHO05D007155 4.2e-37 158.3 160 55.6
MELO3C006721.2 Cucumis melo HOM05D006035 ORTHO05D007155 7.2e-37 157.5 153 56.2
CAN.G97.9 Capsicum annuum HOM05D006035 ORTHO05D007155 9.4e-37 157.1 165 50.9
Glyma.17G034900 Glycine max HOM05D006035 ORTHO05D007155 2.1e-36 156.0 155 53.5
Aa31LG11G8120 Aethionema arabicum HOM05D006035 ORTHO05D007155 4.7e-36 154.8 156 51.9
ClCG05G006630 Citrullus lanatus HOM05D006035 ORTHO05D007155 4.7e-36 154.8 153 54.9
CsaV3_3G015240 Cucumis sativus L. HOM05D006035 ORTHO05D007155 4.7e-36 154.8 154 56.5
THA.LOC104818878 Tarenaya hassleriana HOM05D006035 ORTHO05D007155 4.7e-36 154.8 160 55.0
HanXRQChr11g0353881 Helianthus annuus HOM05D006035 ORTHO05D007155 6.1e-36 154.5 153 53.6
Nitab4.5_0000931g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 6.1e-36 154.5 165 51.5
vmacro15178 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 6.1e-36 154.5 152 54.6
CARHR182020 Cardamine hirsuta HOM05D006035 ORTHO05D007155 1.0e-35 153.7 154 53.9
AT5G49480 Arabidopsis thaliana HOM05D006035 ORTHO05D007155 1.4e-35 153.3 157 52.2
Sabra08G0078500 Salix brachista HOM05D006035 ORTHO05D007155 1.4e-35 153.3 168 52.4
TPR.G25406 Trifolium pratense HOM05D006035 ORTHO05D007155 3.0e-35 152.1 156 50.6
Lalb_Chr07g0182041 Lupinus albus HOM05D006035 ORTHO05D007155 3.9e-35 151.8 156 50.6
TAR633G1133 Trochodendron aralioides HOM05D006035 ORTHO05D007155 3.9e-35 151.8 154 53.2
Medtr4g122260 Medicago truncatula HOM05D006035 ORTHO05D007155 6.7e-35 151.0 157 50.3
Aqoxy2G02699 Aquilegia oxysepala HOM05D006035 ORTHO05D007155 8.8e-35 150.6 157 54.8
Gohir.D10G179700 Gossypium hirsutum HOM05D006035 ORTHO05D007155 8.8e-35 150.6 160 53.8
Phvul.003G115800 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 8.8e-35 150.6 156 50.0
AL8G23240 Arabidopsis lyrata HOM05D006035 ORTHO05D007155 1.1e-34 150.2 158 52.5
SalBow8G4845 Salvia bowleyana HOM05D006035 ORTHO05D007155 1.1e-34 150.2 161 52.8
BcaC04g23738 Brassica carinata HOM05D006035 ORTHO05D007155 1.5e-34 149.8 157 52.2
C09p05220 Brassica napus HOM05D006035 ORTHO05D007155 1.5e-34 149.8 157 52.2
CSS0034436 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.5e-34 149.8 168 53.0
Glyma.07G238700 Glycine max HOM05D006035 ORTHO05D007155 1.5e-34 149.8 154 52.6
Gorai.011G201000 Gossypium raimondii HOM05D006035 ORTHO05D007155 1.5e-34 149.8 160 53.1
A09p04840 Brassica napus HOM05D006035 ORTHO05D007155 2.0e-34 149.4 157 52.2
BolC9t53448H Brassica oleracea HOM05D006035 ORTHO05D007155 2.0e-34 149.4 157 52.2
Phvul.005G129600 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 3.3e-34 148.7 156 49.4
BraA09t36121Z Brassica rapa HOM05D006035 ORTHO05D007155 5.7e-34 147.9 157 52.2
Nitab4.5_0000655g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 5.7e-34 147.9 158 51.9
CANSAT78G2193 Cannabis sativa HOM05D006035 ORTHO05D007155 9.7e-34 147.1 161 52.2
Sp2g19800 Schrenkiella parvula HOM05D006035 ORTHO05D007155 9.7e-34 147.1 161 50.9
SpUn0021_0050 Schrenkiella parvula HOM05D006035 ORTHO05D007155 9.7e-34 147.1 161 50.9
Ca_21435_v3 Cicer arietinum L. HOM05D006035 ORTHO05D007155 1.7e-33 146.4 155 49.0
Nn3g21749 Nelumbo nucifera HOM05D006035 ORTHO05D007155 1.7e-33 146.4 158 51.3
Psat0s4013g0040 Pisum sativum HOM05D006035 ORTHO05D007155 1.7e-33 146.4 157 52.2
BcaB04g19614 Brassica carinata HOM05D006035 ORTHO05D007155 2.8e-33 145.6 158 50.6
Duzib052G0321 Durio zibethinus HOM05D006035 ORTHO05D007155 3.7e-33 145.2 159 53.5
Eucgr.H04056 Eucalyptus grandis HOM05D006035 ORTHO05D007155 3.7e-33 145.2 191 43.5
Lsat_1_v5_gn_1_41620 Lactuca sativa HOM05D006035 ORTHO05D007155 3.7e-33 145.2 155 53.5
EL10Ac3g05523 Beta vulgaris HOM05D006035 ORTHO05D007155 4.8e-33 144.8 164 51.8
PSO761G0247 Papaver somniferum HOM05D006035 ORTHO05D007155 1.4e-32 143.3 164 51.2
HanXRQChr05g0146001 Helianthus annuus HOM05D006035 ORTHO05D007155 3.1e-32 142.1 156 52.6
PGSC0003DMG400001204 Solanum tuberosum HOM05D006035 ORTHO05D007155 3.1e-32 142.1 164 47.6
Sopen01g024580 Solanum pennellii HOM05D006035 ORTHO05D007155 5.3e-32 141.4 164 47.6
Ah.13g071330 Amaranthus hybridus HOM05D006035 ORTHO05D007155 2.0e-31 139.4 178 45.5
ECA246G4755 Erigeron canadensis HOM05D006035 ORTHO05D007155 2.0e-31 139.4 154 51.3
Actinidia31554 Actinidia chinensis HOM05D006035 ORTHO05D007155 4.5e-31 138.3 157 50.3
PSO210G7669 Papaver somniferum HOM05D006035 ORTHO05D007155 5.9e-31 137.9 164 50.0
Peaxi162Scf00228g00041 Petunia axillaris HOM05D006035 ORTHO05D007155 1.3e-30 136.7 133 54.9
Lsat_1_v5_gn_6_116540 Lactuca sativa HOM05D006035 ORTHO05D007155 3.8e-30 135.2 157 49.7
Sc19g0003080 Simmondsia chinensis HOM05D006035 ORTHO05D007155 1.4e-29 133.3 158 45.6
Lsat_1_v5_gn_6_116560 Lactuca sativa HOM05D006035 ORTHO05D007155 1.9e-29 132.9 154 48.7
HPP92_008930 Vanilla planifolia HOM05D006035 ORTHO05D007155 4.2e-29 131.7 154 48.1
FAN07G1803 Fragaria x ananassa HOM05D006035 ORTHO05D007155 5.5e-29 131.3 156 50.0
unitig_32.g11850 Utricularia gibba HOM05D006035 ORTHO05D007155 5.5e-29 131.3 160 49.4
Manes.03G205900 Manihot esculenta HOM05D006035 ORTHO05D007155 9.4e-29 130.6 149 47.7
AUR62039264 Chenopodium quinoa HOM05D006035 ORTHO05D007155 1.2e-28 130.2 164 46.3
AUR62016225 Chenopodium quinoa HOM05D006035 ORTHO05D007155 2.0e-26 122.9 149 47.7
Solyc01g058720.4 Solanum lycopersicum HOM05D006035 ORTHO05D007155 2.0e-26 122.9 147 46.9
Oeu038773.1 Olea europaea HOM05D006035 ORTHO05D007155 5.7e-26 121.3 182 42.9
MSTRG.10157 Avicennia marina HOM05D006035 ORTHO05D007155 7.4e-26 120.9 156 47.4
PGR031G3428 Punica granatum HOM05D006035 ORTHO05D007155 4.8e-25 118.2 162 43.8
ATR0693G356 Amborella trichopoda HOM05D006035 ORTHO05D007155 1.6e-23 113.2 139 46.8
CSS0018156 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 2.9e-22 109.0 159 42.8
Cpa.g.sc9.45 Carica papaya HOM05D006035 ORTHO05D007155 5.0e-22 108.2 154 42.2
Manes.15G000900 Manihot esculenta HOM05D006035 ORTHO05D007155 1.9e-21 106.3 156 39.1
Lj6P692T31 Lonicera japonica HOM05D006035 ORTHO05D007155 5.5e-21 104.8 94 60.6
CDE08G1648 Ceratophyllum demersum HOM05D006035 ORTHO05D007155 1.0e-19 100.5 120 44.2
MD04G1036600 Malus domestica HOM05D006035 ORTHO05D007155 2.3e-19 99.4 96 55.2
Oeu038774.1 Olea europaea HOM05D006035 ORTHO05D007155 9.7e-18 94.0 135 42.2
TAR362G0119 Trochodendron aralioides HOM05D006035 ORTHO05D007155 2.8e-17 92.4 153 40.5
HPP92_005426 Vanilla planifolia HOM05D006035 ORTHO05D007155 2.2e-14 82.8 139 36.0
Os03g0310800 Oryza sativa ssp. japonica HOM05D006035 ORTHO05D007155 2.5e-13 79.3 90 48.9
SEGI_01581 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 7.2e-13 77.8 141 34.0
GSVIVG01034916001 Vitis vinifera HOM05D006035 ORTHO05D007155 9.4e-13 77.4 58 62.1
Prupe.1G115600 Prunus persica HOM05D006035 ORTHO05D007155 3.6e-12 75.5 148 35.1
SEGI_08802 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 4.7e-12 75.1 141 33.3
Ciclev10006337m.g Citrus clementina HOM05D006035 ORTHO05D007155 1.8e-11 73.2 48 70.8
Carub.0008s0934 Capsella rubella HOM05D006035 ORTHO05D007155 2.3e-11 72.8 163 33.7
Zm00001eb395970 Zea mays HOM05D006035 ORTHO05D007155 5.7e-10 68.2 130 33.8
QL06p006093 Quercus lobata HOM05D001729 ORTHO05D001155 7.5e-10 67.8 54 61.1
Aa31LG6G13960 Aethionema arabicum HOM05D000227 ORTHO05D004725 8.3e-09 64.3 140 30.0
CBR_g28479 Chara braunii HOM05D000227 ORTHO05D007155 7.0e-08 61.2 140 29.3
CBR_g28477 Chara braunii HOM05D000227 ORTHO05D000451 9.1e-08 60.8 140 29.3
Gohir.A01G193500 Gossypium hirsutum HOM05D000135 ORTHO05D004276 9.1e-08 60.8 69 40.6
Nitab4.5_0002625g0040 Nicotiana tabacum HOM05D000135 ORTHO05D004427 1.2e-07 60.5 133 31.6
Gohir.D01G183860 Gossypium hirsutum HOM05D000135 ORTHO05D004276 1.6e-07 60.1 69 40.6
Gorai.002G227200 Gossypium raimondii HOM05D000135 ORTHO05D004276 1.6e-07 60.1 69 40.6
SGA_v2.0_scaffold20G09168 Striga asiatica HOM05D006035 ORTHO05D007155 2.7e-07 59.3 74 41.9
FAN06G4215 Fragaria x ananassa HOM05D000122 ORTHO05D017956 5.9e-07 58.2 126 31.7
VMungo0720G0712 Vigna mungo HOM05D000227 ORTHO05D000451 5.9e-07 58.2 130 30.8
SEGI_03909 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 7.7e-07 57.8 165 28.5
Duzib093G1739 Durio zibethinus HOM05D000135 ORTHO05D004276 1.0e-06 57.4 70 38.6
MBI19_g26577_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 1.3e-06 57.0 151 28.5
AL7G13780 Arabidopsis lyrata HOM05D000227 ORTHO05D004725 1.7e-06 56.6 151 26.5
COL.COLO4_32718 Corchorus olitorius HOM05D000135 ORTHO05D004276 1.7e-06 56.6 70 38.6
Duzib128G1351 Durio zibethinus HOM05D000135 ORTHO05D004276 1.7e-06 56.6 71 38.0
Pp3c25_1480 Physcomitrium patens HOM05D000227 ORTHO05D007155 1.7e-06 56.6 143 28.7
SEGI_18095 Sequoiadendron giganteum HOM05D000135 ORTHO05D000203 1.7e-06 56.6 150 30.0
Pp3c16_2040 Physcomitrium patens HOM05D006035 ORTHO05D007155 2.3e-06 56.2 143 28.7
Thecc.05G142900 Theobroma cacao HOM05D000135 ORTHO05D004276 2.3e-06 56.2 71 36.6
Duzib106G1597 Durio zibethinus HOM05D000135 ORTHO05D004276 2.9e-06 55.8 71 36.6
MD12G1087300 Malus domestica HOM05D000135 ORTHO05D004276 2.9e-06 55.8 66 43.9
SGA_v2.0_scaffold5G02968 Striga asiatica HOM05D000135 ORTHO05D000203 5.0e-06 55.1 78 38.5
AT4G37010 Arabidopsis thaliana HOM05D000227 ORTHO05D004725 8.6e-06 54.3 151 24.5
FAN10G0417 Fragaria x ananassa HOM05D000227 ORTHO05D000139 8.6e-06 54.3 141 25.5


User provided reference genes

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