Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 1.7e-157 559.3 278 100.0
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 5.1e-106 388.3 248 79.0
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.6e-104 383.3 243 80.7
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 4.7e-104 381.7 240 79.2
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 2.2e-101 372.9 239 79.9
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 2.4e-100 369.4 248 76.6
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 2.4e-100 369.4 248 76.6
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 5.4e-100 368.2 238 76.1
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 4.3e-97 358.6 243 73.3
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 2.1e-96 356.3 247 75.7
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.1e-96 356.3 243 73.7
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 2.1e-96 356.3 243 73.3
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 2.8e-96 355.9 237 73.4
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 6.2e-96 354.8 245 71.8
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 8.1e-96 354.4 244 71.7
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 1.1e-95 354.0 240 74.6
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 1.8e-95 353.2 243 72.0
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.8e-95 353.2 243 73.7
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 4.0e-95 352.1 240 74.2
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 1.5e-94 350.1 243 71.2
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 7.6e-94 347.8 245 72.7
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 8.4e-93 344.4 243 71.6
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 3.2e-92 342.4 246 69.9
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 6.0e-91 338.2 244 68.4
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.8e-90 336.7 238 71.8
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.3e-90 336.3 240 72.1
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 3.0e-90 335.9 239 70.3
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 3.0e-90 335.9 244 69.7
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 3.9e-90 335.5 243 68.7
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 5.1e-90 335.1 243 70.8
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 6.7e-90 334.7 239 72.4
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 6.7e-90 334.7 244 68.4
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 1.5e-89 333.6 237 69.6
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 1.9e-89 333.2 245 70.6
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 1.9e-89 333.2 240 70.4
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 3.3e-89 332.4 272 66.2
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 4.3e-89 332.0 243 68.3
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 5.6e-89 331.6 243 69.1
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 7.4e-89 331.3 244 67.2
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 9.6e-89 330.9 246 69.1
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 9.6e-89 330.9 246 69.1
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 9.6e-89 330.9 240 69.6
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 9.6e-89 330.9 240 70.8
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 1.3e-88 330.5 243 70.0
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 1.3e-88 330.5 240 70.0
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 1.3e-88 330.5 240 70.0
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.3e-88 330.5 240 69.6
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 3.7e-88 328.9 244 68.9
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 6.2e-88 328.2 240 69.6
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.1e-88 327.8 240 69.2
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 8.1e-88 327.8 249 65.5
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.4e-87 327.0 243 70.0
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 3.1e-87 325.9 242 68.6
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 5.3e-87 325.1 241 67.2
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 9.0e-87 324.3 241 68.5
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 7.6e-86 321.2 245 68.6
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 6.4e-85 318.2 242 67.4
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 1.1e-84 317.4 240 67.9
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 7.1e-84 314.7 264 62.1
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 1.6e-83 313.5 245 66.1
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 2.1e-83 313.2 244 68.0
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 3.9e-82 308.9 244 64.3
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 5.1e-82 308.5 256 64.1
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 8.7e-82 307.8 241 64.7
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.5e-81 307.0 284 58.8
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 3.1e-79 299.3 243 63.4
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 6.9e-79 298.1 232 67.7
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 9.0e-79 297.7 231 69.3
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 1.0e-74 284.3 251 59.0
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 6.7e-74 281.6 247 59.5
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 6.7e-74 281.6 240 61.7
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 9.7e-73 277.7 247 61.5
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 4.8e-72 275.4 183 77.6
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 8.2e-72 274.6 241 61.8
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 3.8e-69 265.8 250 56.8
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 8.5e-69 264.6 239 59.8
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.9e-68 263.5 239 59.4
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 1.9e-68 263.5 236 59.7
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 3.2e-68 262.7 246 55.3
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 2.7e-67 259.6 246 55.7
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 2.7e-67 259.6 240 57.1
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 6.1e-67 258.5 240 57.1
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 6.1e-67 258.5 246 56.5
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 6.1e-67 258.5 246 56.5
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 7.9e-67 258.1 240 57.1
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.0e-66 257.7 240 57.1
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 7.4e-65 251.5 235 57.0
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 8.2e-64 248.1 239 53.1
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 2.4e-63 246.5 235 56.2
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 3.1e-63 246.1 243 54.3
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 4.1e-63 245.7 244 54.1
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.0e-61 241.1 233 55.8
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 8.5e-61 238.0 238 52.5
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 1.6e-59 233.8 242 52.5
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 4.7e-59 232.3 245 51.8
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 8.2e-56 221.5 235 52.8
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 7.0e-55 218.4 171 67.8
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 1.4e-52 210.7 263 45.6
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 5.5e-52 208.8 210 57.1
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 4.7e-51 205.7 237 51.5
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.1e-49 201.1 257 43.2
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 6.3e-48 195.3 240 47.5
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 4.2e-44 182.6 146 66.4
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.4e-42 177.6 178 56.2
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 5.2e-42 175.6 293 39.2
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.5e-36 157.5 147 52.4
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 2.5e-36 156.8 239 39.7
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 4.2e-36 156.0 158 48.7
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 1.2e-33 147.9 235 37.9
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 6.3e-32 142.1 150 46.0
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 2.0e-25 120.6 74 73.0
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 4.9e-24 115.9 63 82.5
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 2.5e-20 103.6 114 51.8
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 7.5e-17 92.0 134 44.8
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 4.9e-16 89.4 60 78.3
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 4.6e-14 82.8 58 67.2
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 8.6e-13 78.6 54 75.9
Dinv43551 Davidia involucrata HOM05D006268 ORTHO05D180404 1.9e-12 77.4 80 50.0
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 7.3e-12 75.5 65 56.9
SGA_v2.0_scaffold7G03663 Striga asiatica HOM05D000015 ORTHO05D000984 6.0e-06 55.8 33 78.8


User provided reference genes

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