Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43832 Davidia involucrata HOM05D000104 ORTHO05D004024 1.8e-307 1058.5 573 100.0
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 9.7e-253 876.7 619 80.5
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 1.2e-202 710.3 589 69.1
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 7.8e-202 707.6 623 66.6
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 4.9e-196 688.3 625 65.3
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 6.4e-196 688.0 627 64.0
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 2.4e-195 686.0 614 65.1
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 2.8e-191 672.5 629 63.3
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 4.7e-191 671.8 625 63.4
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 3.1e-190 669.1 625 63.2
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 1.3e-185 653.7 627 62.4
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 1.1e-184 650.6 615 61.3
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 2.8e-183 646.0 626 61.3
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 1.4e-182 643.7 628 61.0
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 5.8e-181 638.3 626 62.9
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 8.4e-180 634.4 617 61.6
CiPaw.01G063200 Carya illinoinensis HOM05D000104 ORTHO05D004024 6.6e-177 624.8 626 60.2
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 1.9e-176 623.2 633 60.0
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 5.6e-176 621.7 630 60.8
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 2.1e-175 619.8 628 61.1
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 3.8e-172 609.0 620 58.7
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 9.6e-168 594.3 621 58.5
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 1.6e-167 593.6 639 59.9
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 3.4e-165 585.9 625 59.0
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.5e-165 585.5 625 59.2
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 1.3e-164 583.9 625 58.6
Duzib138G0831 Durio zibethinus HOM05D000104 ORTHO05D004024 8.4e-164 581.3 624 57.7
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 4.2e-163 578.9 629 57.7
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 1.5e-160 570.5 624 57.4
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 1.3e-159 567.4 621 57.5
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 3.7e-159 565.8 625 57.8
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.8e-159 565.5 628 57.2
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 3.1e-158 562.8 620 55.5
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.2e-157 560.8 620 55.3
COL.COLO4_12729 Corchorus olitorius HOM05D000104 ORTHO05D004024 5.8e-157 558.5 606 57.1
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 5.8e-157 558.5 627 56.9
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 1.7e-156 557.0 623 55.9
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.9e-156 555.4 627 56.9
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 4.9e-156 555.4 625 55.2
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.9e-155 553.5 625 57.1
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 1.9e-155 553.5 626 55.8
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 3.2e-155 552.7 624 54.3
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.2e-155 552.4 627 56.9
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 1.6e-154 550.4 626 55.0
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 2.7e-154 549.7 624 54.0
Lalb_Chr17g0339491 Lupinus albus HOM05D000104 ORTHO05D004024 1.3e-153 547.4 627 55.0
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 3.0e-153 546.2 608 56.4
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 3.0e-153 546.2 625 54.9
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 4.3e-152 542.3 620 55.8
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 4.3e-152 542.3 621 55.9
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 7.4e-152 541.6 622 56.1
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 2.2e-151 540.0 624 53.8
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 1.8e-150 537.0 626 54.8
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.5e-149 533.9 620 53.5
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 2.9e-148 529.6 623 53.3
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 8.5e-148 528.1 624 55.0
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.1e-147 527.7 624 54.8
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 5.5e-147 525.4 624 53.5
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 6.1e-146 521.9 624 55.3
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 1.0e-145 521.2 626 53.7
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.0e-145 521.2 620 53.7
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 1.0e-145 521.2 617 54.9
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 1.1e-144 517.7 624 53.4
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 1.5e-144 517.3 630 52.5
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 7.4e-144 515.0 625 53.3
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.7e-143 513.8 625 52.8
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 3.7e-143 512.7 626 53.2
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 3.7e-143 512.7 625 54.9
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 6.3e-143 511.9 624 52.7
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 1.8e-142 510.4 625 53.3
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 3.1e-142 509.6 622 54.0
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 2.0e-141 506.9 610 54.3
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 3.4e-141 506.1 627 54.4
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 4.5e-141 505.8 619 53.0
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 2.9e-140 503.1 626 52.2
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 5.0e-140 502.3 619 52.3
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 1.1e-139 501.1 629 51.0
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 3.2e-139 499.6 629 51.0
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 4.2e-139 499.2 625 52.8
Rhsim01G0163000 Rhododendron simsii HOM05D000104 ORTHO05D004024 7.2e-139 498.4 607 54.2
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 1.4e-137 494.2 626 51.8
VMungo1383G0174 Vigna mungo HOM05D000104 ORTHO05D004024 1.4e-137 494.2 623 52.0
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 2.3e-137 493.4 623 51.7
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 3.0e-137 493.0 616 52.1
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 1.1e-136 491.1 629 51.0
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 3.7e-135 486.1 626 51.4
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 5.9e-133 478.8 622 50.2
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 1.3e-132 477.6 627 51.2
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 2.1e-130 470.3 622 50.3
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 6.7e-129 465.3 601 54.2
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 1.1e-128 464.5 618 52.3
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 3.3e-128 463.0 627 49.6
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 1.4e-126 457.6 631 48.3
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 1.5e-123 447.6 627 47.7
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 2.2e-116 423.7 611 47.1
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 5.5e-115 419.1 626 47.8
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 1.6e-114 417.5 626 47.6
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 1.6e-114 417.5 629 47.2
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 3.0e-113 413.3 606 49.5
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 1.1e-107 394.8 627 44.0
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 4.7e-106 389.4 627 47.8
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 1.8e-105 387.5 589 49.2
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 4.0e-105 386.3 613 46.7
HanXRQChr16g0522401 Helianthus annuus HOM05D000104 ORTHO05D004024 4.0e-105 386.3 627 47.7
PGR031G3697 Punica granatum HOM05D000104 ORTHO05D004024 2.0e-104 384.0 669 43.8
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 4.4e-104 382.9 605 47.4
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 2.8e-103 380.2 614 44.1
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 4.9e-103 379.4 614 46.6
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 1.1e-102 378.3 608 44.6
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 1.4e-102 377.9 692 43.6
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 5.4e-102 375.9 658 42.9
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 5.0e-100 369.4 600 47.8
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 4.7e-98 362.8 609 44.2
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 2.0e-96 357.5 615 43.9
C03p30340 Brassica napus HOM05D000104 ORTHO05D004024 2.6e-96 357.1 616 45.1
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 3.4e-96 356.7 612 44.9
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 1.3e-95 354.8 617 45.1
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 1.7e-95 354.4 613 44.0
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 2.4e-94 350.5 615 44.2
ATR0680G059 Amborella trichopoda HOM05D000104 ORTHO05D004024 4.1e-94 349.7 637 43.0
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 2.3e-92 344.0 618 43.9
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 3.9e-92 343.2 691 41.5
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 5.0e-92 342.8 549 47.2
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 3.6e-90 336.7 591 45.3
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 2.3e-89 334.0 608 41.9
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 8.9e-89 332.0 518 48.3
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 1.3e-87 328.2 611 43.0
unitig_8.g3795 Utricularia gibba HOM05D000104 ORTHO05D017821 6.6e-84 315.8 564 43.4
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 8.6e-84 315.5 609 40.6
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 5.6e-83 312.8 550 44.5
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 7.3e-83 312.4 602 42.0
CDE06G1551 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 1.2e-82 311.6 613 40.5
SHI13459 Sapria himalayana HOM05D000104 ORTHO05D004024 6.0e-77 292.7 601 41.6
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 1.3e-76 291.6 583 43.9
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 1.8e-73 281.2 579 42.1
Oeu060227.1 Olea europaea HOM05D000104 ORTHO05D004024 3.5e-69 266.9 376 50.3
MBI17_g33791_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 4.3e-67 260.0 285 58.2
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 6.9e-65 252.7 237 62.0
HPP92_025786 Vanilla planifolia HOM05D000104 ORTHO05D004024 9.3e-62 242.3 621 35.9
SEGI_28802 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 3.4e-56 223.8 602 35.4
Os02g0114033 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 1.6e-50 204.9 554 35.4
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 6.2e-50 203.0 251 50.6
unitig_22.g5348 Utricularia gibba HOM05D000104 ORTHO05D004024 3.5e-45 187.2 249 49.0
C07p31550 Brassica napus HOM05D000104 ORTHO05D004024 1.9e-38 164.9 440 34.5
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 1.9e-38 164.9 269 46.5
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 3.5e-37 160.6 616 31.8
unitig_22.g5349 Utricularia gibba HOM05D000104 ORTHO05D017821 3.7e-34 150.6 162 53.7
CDE02G1733 Ceratophyllum demersum HOM05D000104 ORTHO05D017821 3.8e-31 140.6 228 44.7
HPP92_022593 Vanilla planifolia HOM05D000104 ORTHO05D004024 2.5e-30 137.9 499 31.9
CDE02G2573 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 4.2e-30 137.1 279 38.7
Oeu060229.1 Olea europaea HOM05D000104 ORTHO05D017821 6.3e-26 123.2 190 48.9
HPP92_025792 Vanilla planifolia HOM05D000104 ORTHO05D017821 8.5e-23 112.8 142 47.2
Nitab4.5_0006018g0100 Nicotiana tabacum HOM05D000104 ORTHO05D004024 1.1e-22 112.5 80 70.0
TPR.G21176 Trifolium pratense HOM05D000104 ORTHO05D017821 2.5e-22 111.3 134 52.2
BcaC06g34219 Brassica carinata HOM05D000104 ORTHO05D004024 6.7e-20 103.2 545 26.6
HPP92_025793 Vanilla planifolia HOM05D000104 ORTHO05D004024 1.7e-15 88.6 220 35.0
Psat5g170920 Pisum sativum HOM05D039909 ORTHO05D017821 5.3e-09 67.0 59 64.4
TPR.G27492 Trifolium pratense HOM05D000104 ORTHO05D017821 6.5e-07 60.1 76 48.7
Psat3g039480 Pisum sativum HOM05D002175 ORTHO05D002303 3.2e-06 57.8 82 46.3
Psat6g240600 Pisum sativum HOM05D000104 ORTHO05D004024 3.2e-06 57.8 61 50.8


User provided reference genes

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