Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 6.0e-230 800.4 388 100.0
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 4.1e-178 628.2 406 77.1
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.3e-176 623.2 406 76.6
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 3.4e-169 598.6 414 72.2
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 9.7e-164 580.5 442 68.1
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.6e-161 573.2 429 68.5
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 3.8e-160 568.5 431 67.5
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 2.3e-157 559.3 440 64.8
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.6e-153 546.6 414 66.2
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 8.0e-150 534.3 438 65.5
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 8.8e-149 530.8 423 63.1
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 4.4e-148 528.5 406 64.8
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.1e-146 523.9 416 63.5
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.4e-146 521.5 390 65.6
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 7.0e-146 521.2 385 66.2
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.6e-145 520.0 382 66.5
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 1.6e-145 520.0 411 64.5
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.8e-144 515.4 382 65.4
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 3.8e-144 515.4 423 61.9
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 4.2e-143 511.9 411 63.5
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 9.5e-143 510.8 407 62.9
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.0e-141 507.3 405 65.9
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 1.4e-141 506.9 401 64.8
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 2.3e-141 506.1 431 60.3
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 6.8e-141 504.6 385 65.7
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 2.0e-140 503.1 405 61.0
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 3.4e-140 502.3 430 60.7
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 5.7e-140 501.5 407 63.4
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.7e-139 500.0 381 66.4
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 3.7e-139 498.8 403 63.3
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.1e-138 497.3 418 61.7
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.8e-138 496.5 433 59.4
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.8e-138 496.5 418 61.7
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 4.1e-138 495.4 437 58.6
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 7.0e-138 494.6 413 62.0
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 1.6e-137 493.4 436 58.5
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 1.6e-137 493.4 400 62.2
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 2.0e-137 493.0 422 59.7
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 2.7e-137 492.7 452 58.4
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 3.5e-137 492.3 392 64.0
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 5.9e-137 491.5 427 60.9
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 4.3e-135 485.3 412 61.7
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 7.3e-135 484.6 412 60.2
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 2.8e-134 482.6 418 59.8
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 8.0e-134 481.1 402 62.2
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 1.4e-133 480.3 405 61.0
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 6.8e-133 478.0 414 60.1
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 8.9e-133 477.6 412 58.7
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 1.2e-132 477.2 403 60.3
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.6e-132 476.1 439 57.6
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 3.4e-132 475.7 395 61.5
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 3.4e-132 475.7 418 60.5
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 1.3e-131 473.8 413 58.8
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 2.2e-131 473.0 410 57.6
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 6.4e-131 471.5 411 58.6
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 8.3e-131 471.1 412 61.9
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 8.3e-131 471.1 400 59.8
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 1.1e-130 470.7 420 57.4
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.6e-129 466.8 416 57.7
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 3.5e-129 465.7 428 56.1
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.3e-128 463.8 420 56.7
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 1.7e-128 463.4 367 65.4
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 3.0e-128 462.6 425 57.6
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 1.9e-127 459.9 417 59.0
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.3e-127 459.1 418 56.0
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 5.6e-127 458.4 440 55.5
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.2e-126 457.2 418 55.7
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 1.8e-125 453.4 346 65.3
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 4.0e-125 452.2 446 53.4
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.5e-124 450.3 437 55.4
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 2.6e-124 449.5 413 57.1
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.7e-123 446.8 367 62.1
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 2.2e-123 446.4 412 56.8
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 7.0e-122 441.4 413 56.4
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 1.2e-121 440.7 464 51.5
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 1.6e-121 440.3 355 63.1
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.7e-120 436.8 387 57.6
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 4.3e-119 432.2 425 54.4
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 5.6e-119 431.8 358 61.2
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 3.6e-118 429.1 403 54.6
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.1e-117 427.6 383 59.0
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.3e-117 426.4 321 64.2
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 6.8e-117 424.9 388 56.7
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.3e-115 420.6 407 53.6
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 8.3e-115 417.9 353 62.3
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.3e-112 410.6 375 58.4
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 5.6e-111 405.2 351 60.1
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 9.5e-111 404.4 346 62.1
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 1.7e-107 393.7 333 61.3
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.9e-106 390.2 369 56.9
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 3.0e-104 382.9 312 60.9
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 1.4e-101 374.0 360 55.8
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 1.2e-97 360.9 383 50.1
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 3.3e-95 352.8 303 61.4
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 4.8e-94 349.0 416 47.8
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 7.6e-92 341.7 397 47.4
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 7.1e-90 335.1 225 70.7
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 2.5e-87 326.6 305 58.7
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 7.4e-87 325.1 257 63.0
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 1.1e-85 321.2 380 49.7
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 2.4e-85 320.1 257 62.3
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.9e-80 302.8 268 59.7
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.5e-79 300.8 512 35.7
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.8e-70 269.2 188 67.0
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 8.2e-70 268.5 237 59.5
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.9e-69 265.4 190 65.8
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 4.5e-68 262.7 289 48.1
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.9e-66 257.3 220 57.7
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.9e-66 257.3 520 33.3
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 5.5e-66 255.8 416 38.0
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 3.0e-64 250.0 242 56.2
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 1.8e-61 240.7 216 54.2
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 2.4e-61 240.4 408 38.7
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 9.1e-61 238.4 304 48.0
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 6.3e-54 215.7 299 44.1
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 6.3e-54 215.7 165 66.7
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 1.2e-49 201.4 221 49.3
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 8.0e-49 198.7 264 42.8
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 6.3e-46 189.1 154 63.0
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 2.2e-43 180.6 219 46.1
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 2.2e-38 164.1 118 63.6
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 9.1e-37 158.7 108 66.7
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.7e-36 157.1 370 30.0
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 7.7e-36 155.6 91 81.3
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 5.5e-34 149.4 427 29.7
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 2.3e-32 144.1 124 55.6
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 3.4e-31 140.2 189 44.4
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.3e-30 135.6 152 49.3
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 8.3e-30 135.6 93 71.0
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 1.1e-29 135.2 102 70.6
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 2.3e-27 127.5 87 72.4
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.2e-25 121.7 420 26.9
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.0e-24 118.6 354 26.6
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 1.0e-24 118.6 135 49.6
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 1.2e-15 88.6 107 47.7
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 5.4e-13 79.7 61 59.0
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 1.3e-11 75.1 288 24.7
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.8e-09 67.4 287 23.7
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 8.9e-08 62.4 68 50.0
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 5.8e-07 59.7 33 78.8
Actinidia27239 Actinidia chinensis HOM05D005745 ORTHO05D006857 3.7e-06 57.0 66 48.5


User provided reference genes

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