Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 2120.1 1072 100.0
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1734.2 1094 81.5
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1706.0 1096 80.4
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1683.3 1097 79.3
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1679.5 1093 79.0
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1666.4 1092 79.4
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1650.2 1092 76.8
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1649.8 1099 77.4
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1644.4 1096 77.2
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1643.2 1099 77.8
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1640.9 1095 77.0
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1639.4 949 89.8
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1632.1 1100 76.3
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1625.9 1095 76.4
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1616.7 1105 74.7
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1615.9 1093 75.9
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1611.7 1107 75.5
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1607.0 1092 75.5
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1602.8 1136 74.2
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1602.4 1092 75.3
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1600.5 1092 75.5
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1600.1 1100 74.3
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1599.3 1093 75.5
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1598.6 1093 74.6
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1596.3 1093 74.5
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1588.9 1093 74.1
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1588.5 1103 74.0
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1587.8 1093 74.7
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1583.2 1092 74.3
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1578.9 1101 74.1
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1578.9 1154 72.3
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1576.2 1093 72.9
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1575.8 1097 73.2
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1563.5 1095 73.9
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1563.1 1083 74.2
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1561.2 1094 73.9
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1558.9 1096 73.1
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1558.9 1097 72.5
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1554.3 1083 74.2
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1551.2 1103 72.4
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1550.8 1033 75.7
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1545.8 1017 76.2
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1541.6 1087 73.1
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1536.9 1035 75.4
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1533.9 1092 71.3
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1533.1 1095 71.2
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1531.2 1141 70.6
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1521.5 1101 71.8
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1520.0 1100 70.1
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1515.4 1184 68.1
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1511.1 1089 71.1
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1507.3 991 77.0
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1506.1 1089 70.5
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1494.2 1093 72.4
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1493.8 1096 70.9
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1488.4 1096 70.6
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1487.2 985 77.4
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1486.5 1097 71.0
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1478.8 968 78.0
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1465.7 1122 68.4
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1463.0 1119 69.2
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1460.7 1008 73.4
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1455.7 1000 74.2
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1455.7 1114 68.4
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1454.1 1092 69.6
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1453.3 1092 69.7
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1451.8 1092 69.5
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1450.6 1093 69.7
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1448.7 1092 69.6
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1442.9 997 75.2
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1441.8 962 76.6
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1440.6 1245 63.5
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1407.1 1033 68.4
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1400.2 1090 66.2
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1389.4 1035 68.2
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1332.4 1213 60.7
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1315.1 1115 64.1
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1313.5 998 65.6
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1305.0 900 74.1
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1293.1 888 74.8
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1270.0 968 70.1
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1265.8 1100 62.9
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1204.9 1050 60.0
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1204.9 1085 57.9
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1172.9 1024 59.3
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 0.0e+00 1117.1 662 83.4
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1115.9 1160 54.7
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1108.2 1049 53.4
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 5.4e-305 1051.2 1120 54.6
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 4.1e-297 1025.0 1069 52.0
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 6.0e-296 1021.1 995 56.3
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 1.8e-284 983.0 772 65.4
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.2e-277 960.3 1047 49.3
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 2.8e-277 959.1 1041 50.3
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 9.9e-267 924.1 617 74.2
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.6e-264 916.8 598 78.3
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 9.7e-222 774.6 501 79.0
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 1.5e-219 767.3 604 66.1
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 6.8e-199 698.7 815 52.1
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 2.4e-196 690.3 610 64.3
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 5.7e-190 669.1 539 68.8
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 2.7e-187 660.2 494 69.4
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 2.3e-186 657.1 626 59.3
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 9.5e-177 625.2 382 83.0
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 6.6e-170 602.4 397 76.3
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.1e-163 580.9 479 64.7
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 3.3e-153 547.0 430 67.0
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 1.1e-151 542.0 357 80.1
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 1.6e-136 491.5 341 76.0
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 5.5e-132 476.5 313 78.3
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 1.2e-131 475.3 362 70.7
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 1.0e-122 445.7 296 76.0
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.3e-121 440.3 294 72.1
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.2e-116 423.7 816 38.0
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 3.8e-109 400.6 305 70.5
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.1e-103 380.9 197 89.8
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 5.2e-82 310.5 292 50.3
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 6.8e-82 310.1 223 72.2
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.4e-73 281.2 261 59.0
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.4e-66 259.2 174 78.7
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 4.3e-60 237.7 184 69.0
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 4.7e-59 234.2 142 81.0
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 4.0e-50 204.5 189 60.8
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.4e-47 195.3 150 64.0
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 4.9e-40 171.0 105 79.0
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 9.3e-39 166.8 203 49.8
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 8.7e-37 160.2 148 56.8
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 8.1e-35 153.7 125 60.8
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 4.2e-31 141.4 93 75.3
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 5.4e-31 141.0 99 72.7
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 5.4e-31 141.0 112 61.6
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 6.0e-30 137.5 127 62.2
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 6.0e-30 137.5 127 62.2
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 7.9e-30 137.1 134 53.7
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.3e-29 136.3 92 71.7
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 5.1e-29 134.4 151 47.0
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 6.7e-29 134.0 112 62.5
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 3.4e-25 121.7 68 86.8
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 3.8e-24 118.2 95 69.5
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 4.9e-24 117.9 75 74.7
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 3.7e-19 101.7 185 35.7
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.1e-15 90.1 66 69.7
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 2.7e-14 85.5 54 74.1
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 4.6e-14 84.7 109 49.5
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 6.0e-14 84.3 51 74.5
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 5.1e-13 81.3 55 70.9
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 6.9e-10 70.9 45 75.6
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 4.5e-09 68.2 59 59.3
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 5.9e-09 67.8 37 81.1
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 6.5e-08 64.3 44 68.2
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 6.5e-08 64.3 44 68.2
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 6.5e-08 64.3 44 68.2
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 1.1e-07 63.5 44 68.2
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 3.2e-07 62.0 43 67.4
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 9.3e-07 60.5 44 63.6
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 9.3e-07 60.5 29 86.2
CAN.G1473.1 Capsicum annuum HOM05D004422 ORTHO05D013213 2.7e-06 58.9 43 62.8
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 3.6e-06 58.5 45 60.0


User provided reference genes

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