Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 1.9e-33 145.2 72 100.0
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 7.7e-14 80.1 54 75.9
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.7e-13 79.0 60 73.3
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 3.8e-13 77.8 55 70.9
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 5.0e-13 77.4 55 70.9
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 8.5e-13 76.6 60 71.7
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 1.1e-12 76.3 54 72.2
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 1.4e-12 75.9 54 72.2
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 4.2e-12 74.3 62 64.5
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 7.2e-12 73.6 55 70.9
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 7.2e-12 73.6 55 70.9
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 9.4e-12 73.2 63 65.1
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.6e-11 72.4 60 66.7
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.6e-11 72.4 59 67.8
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 2.1e-11 72.0 63 63.5
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 4.6e-11 70.9 52 75.0
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 7.9e-11 70.1 59 64.4
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 7.9e-11 70.1 58 65.5
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 7.9e-11 70.1 49 75.5
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 7.9e-11 70.1 49 75.5
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 7.9e-11 70.1 49 75.5
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 7.9e-11 70.1 49 75.5
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 7.9e-11 70.1 43 83.7
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 7.9e-11 70.1 59 67.8
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 7.9e-11 70.1 49 75.5
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 7.9e-11 70.1 49 75.5
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 1.0e-10 69.7 62 61.3
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 1.0e-10 69.7 54 68.5
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 1.4e-10 69.3 49 75.5
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.4e-10 69.3 44 81.8
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 1.4e-10 69.3 61 65.6
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.4e-10 69.3 61 65.6
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 1.8e-10 68.9 59 67.8
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.8e-10 68.9 55 67.3
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 1.8e-10 68.9 43 81.4
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 2.3e-10 68.6 49 73.5
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 2.3e-10 68.6 43 81.4
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 3.0e-10 68.2 53 66.0
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 3.0e-10 68.2 42 83.3
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 3.9e-10 67.8 55 65.5
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 3.9e-10 67.8 46 73.9
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 5.1e-10 67.4 59 66.1
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 5.1e-10 67.4 49 73.5
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 5.1e-10 67.4 59 66.1
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 6.7e-10 67.0 50 68.0
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 6.7e-10 67.0 50 68.0
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 6.7e-10 67.0 57 66.7
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 6.7e-10 67.0 41 82.9
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 6.7e-10 67.0 64 57.8
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 6.7e-10 67.0 46 73.9
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 6.7e-10 67.0 45 73.3
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 8.8e-10 66.6 41 82.9
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 1.1e-09 66.2 46 71.7
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 1.5e-09 65.9 50 68.0
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 1.5e-09 65.9 63 55.6
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 3.3e-09 64.7 64 57.8
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 3.3e-09 64.7 63 60.3
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 3.3e-09 64.7 43 72.1
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 3.3e-09 64.7 51 66.7
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 3.3e-09 64.7 64 59.4
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 3.3e-09 64.7 53 64.2
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 4.3e-09 64.3 57 63.2
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 4.3e-09 64.3 47 66.0
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 4.3e-09 64.3 55 63.6
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 5.7e-09 63.9 63 57.1
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 5.7e-09 63.9 63 57.1
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 5.7e-09 63.9 55 60.0
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 5.7e-09 63.9 57 63.2
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 7.4e-09 63.5 53 62.3
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 9.7e-09 63.2 57 57.9
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 9.7e-09 63.2 57 57.9
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 9.7e-09 63.2 58 60.3
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 1.3e-08 62.8 57 57.9
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 1.3e-08 62.8 54 57.4
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.7e-08 62.4 55 58.2
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 2.2e-08 62.0 49 67.3
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 2.2e-08 62.0 47 66.0
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 2.8e-08 61.6 53 60.4
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 4.8e-08 60.8 51 66.7
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 4.8e-08 60.8 56 58.9
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 6.3e-08 60.5 49 65.3
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 6.3e-08 60.5 49 65.3
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 6.3e-08 60.5 49 65.3
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 6.3e-08 60.5 49 65.3
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 8.2e-08 60.1 41 70.7
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 8.2e-08 60.1 46 67.4
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.2e-08 60.1 43 69.8
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.4e-07 59.3 57 57.9
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.4e-07 59.3 55 60.0
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 2.4e-07 58.5 43 69.8
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 2.4e-07 58.5 42 66.7
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 1.2e-06 56.2 54 57.4
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 1.5e-06 55.8 54 51.9
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 2.6e-06 55.1 39 71.8
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 2.6e-06 55.1 48 58.3
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 4.5e-06 54.3 49 57.1
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 5.9e-06 53.9 54 51.9


User provided reference genes

Program Settings