Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42841 Davidia involucrata HOM05D003333 ORTHO05D003836 3.6e-96 355.1 212 100.0
Dinv43259 Davidia involucrata HOM05D003333 ORTHO05D003836 1.5e-86 323.2 201 98.0
Lj9A718T41 Lonicera japonica HOM05D003333 ORTHO05D003836 1.3e-53 213.8 171 79.5
CSS0000248 Camellia sinensis var. sinensis HOM05D003333 ORTHO05D003836 1.4e-52 210.3 171 79.5
Gohir.A05G052600 Gossypium hirsutum HOM05D003333 ORTHO05D003836 1.9e-52 209.9 171 80.1
DCAR_019403 Daucus carota HOM05D003333 ORTHO05D003836 2.5e-52 209.5 170 79.4
Cc00_g27050 Coffea canephora HOM05D003333 ORTHO05D003836 4.2e-52 208.8 171 76.0
Gorai.009G056000 Gossypium raimondii HOM05D003333 ORTHO05D003836 7.2e-52 208.0 171 79.5
Manes.14G145200 Manihot esculenta HOM05D003333 ORTHO05D003836 1.6e-51 206.8 171 60.8
Gohir.D05G054300 Gossypium hirsutum HOM05D003333 ORTHO05D003836 2.1e-51 206.5 171 78.9
Rhsim01G0028000 Rhododendron simsii HOM05D003333 ORTHO05D003836 2.1e-51 206.5 171 79.5
TWI34G1096 Tripterygium wilfordii HOM05D003333 ORTHO05D003836 4.6e-51 205.3 171 77.2
MSTRG.6153 Avicennia marina HOM05D003333 ORTHO05D003836 1.4e-50 203.8 171 78.4
Hma1.2p1_0222F.1_g093690 Hydrangea macrophylla HOM05D003333 ORTHO05D003836 1.8e-50 203.4 171 77.8
Oeu021312.1 Olea europaea HOM05D003333 ORTHO05D003836 3.9e-50 202.2 167 79.0
Duzib168G0432 Durio zibethinus HOM05D003333 ORTHO05D003836 8.8e-50 201.1 171 77.2
Ciclev10008985m.g Citrus clementina HOM05D003333 ORTHO05D003836 1.1e-49 200.7 168 78.6
ECA240G0541 Erigeron canadensis HOM05D003333 ORTHO05D003836 2.0e-49 199.9 171 73.1
vmacro16794 Vaccinium macrocarpon HOM05D003333 ORTHO05D003836 2.0e-49 199.9 171 77.8
Aqoxy7G03374 Aquilegia oxysepala HOM05D003333 ORTHO05D003836 3.3e-49 199.1 171 76.6
Migut.J01369 Erythranthe guttata HOM05D003333 ORTHO05D003836 4.3e-49 198.7 167 70.1
Dinv41364 Davidia involucrata HOM05D003333 ORTHO05D003836 5.7e-49 198.4 171 79.5
SalBow1G6609 Salvia bowleyana HOM05D003333 ORTHO05D003836 5.7e-49 198.4 167 77.2
TPR.G24850 Trifolium pratense HOM05D003333 ORTHO05D003836 7.4e-49 198.0 167 77.8
Atru.chr6.2482 Acer truncatum HOM05D003333 ORTHO05D003836 1.3e-48 197.2 168 57.7
arahy.Tifrunner.gnm1.ann1.LQ9XAK Arachis hypogaea HOM05D003333 ORTHO05D003836 1.7e-48 196.8 175 73.7
Sabra18G0089700 Salix brachista HOM05D003333 ORTHO05D003836 4.8e-48 195.3 171 74.9
HanXRQChr09g0244551 Helianthus annuus HOM05D003333 ORTHO05D003836 6.3e-48 194.9 167 71.9
Eucgr.C02501 Eucalyptus grandis HOM05D003333 ORTHO05D003836 3.1e-47 192.6 168 75.6
Eucgr.L03182 Eucalyptus grandis HOM05D003333 ORTHO05D003836 3.1e-47 192.6 168 75.6
Psat0s3930g0160 Pisum sativum HOM05D003333 ORTHO05D003836 3.1e-47 192.6 173 73.4
Eucgr.L01446 Eucalyptus grandis HOM05D003333 ORTHO05D003836 6.9e-47 191.4 171 74.3
Prupe.7G264700 Prunus persica HOM05D003333 ORTHO05D003836 6.9e-47 191.4 171 72.5
Peaxi162Scf00267g00510 Petunia axillaris HOM05D003333 ORTHO05D003836 9.1e-47 191.0 167 75.4
Cpa.g.sc46.170 Carica papaya HOM05D003333 ORTHO05D003836 1.2e-46 190.7 166 57.2
TAR636G2329 Trochodendron aralioides HOM05D003333 ORTHO05D003836 1.2e-46 190.7 170 73.5
SGA_v2.0_scaffold265G46094 Striga asiatica HOM05D003333 ORTHO05D003836 5.9e-46 188.3 171 72.5
QL02p093741 Quercus lobata HOM05D003333 ORTHO05D003836 1.0e-45 187.6 171 72.5
CANSAT11G2442 Cannabis sativa HOM05D003333 ORTHO05D003836 1.3e-45 187.2 171 69.6
Haze_19185 Corylus avellana HOM05D003333 ORTHO05D003836 1.3e-45 187.2 170 74.1
Thecc.09G028300 Theobroma cacao HOM05D003333 ORTHO05D003836 1.7e-45 186.8 171 72.5
CiPaw.15G166600 Carya illinoinensis HOM05D003333 ORTHO05D003836 2.9e-45 186.0 171 72.5
Medtr4g130620 Medicago truncatula HOM05D003333 ORTHO05D003836 3.8e-45 185.7 171 73.1
Phvul.003G155100 Phaseolus vulgaris HOM05D003333 ORTHO05D003836 3.8e-45 185.7 171 73.1
EL10Ac8g18939 Beta vulgaris HOM05D003333 ORTHO05D003836 5.0e-45 185.3 167 73.1
AUR62028344 Chenopodium quinoa HOM05D003333 ORTHO05D003836 5.0e-45 185.3 167 75.4
Ca_21138_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 8.5e-45 184.5 171 73.7
Ca_21143_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 8.5e-45 184.5 171 73.7
Lsat_1_v5_gn_7_50080 Lactuca sativa HOM05D003333 ORTHO05D003836 1.4e-44 183.7 167 74.3
Lj4g0011279 Lotus japonicus HOM05D003333 ORTHO05D003836 3.2e-44 182.6 171 72.5
Potri.018G104900 Populus trichocarpa HOM05D003333 ORTHO05D003836 4.2e-44 182.2 171 71.9
Ah.14g084600 Amaranthus hybridus HOM05D003333 ORTHO05D003836 9.4e-44 181.0 168 72.6
Lalb_Chr13g0300781 Lupinus albus HOM05D003333 ORTHO05D003836 2.7e-43 179.5 112 76.8
Nn8g39960 Nelumbo nucifera HOM05D003333 ORTHO05D003836 2.7e-43 179.5 171 70.2
arahy.Tifrunner.gnm1.ann1.GH9EZK Arachis hypogaea HOM05D003333 ORTHO05D003836 3.6e-43 179.1 170 71.2
Cfa020808 Carpinus fangiana HOM05D003333 ORTHO05D003836 3.6e-43 179.1 171 69.6
VMungo1215G1683 Vigna mungo HOM05D003333 ORTHO05D003836 3.6e-43 179.1 171 70.8
RcHm_v2.0_Chr2g0085481 Rosa chinensis HOM05D003333 ORTHO05D003836 4.7e-43 178.7 171 63.7
Sc08g0009270 Simmondsia chinensis HOM05D003333 ORTHO05D003836 6.1e-43 178.3 171 72.5
MD02G1006200 Malus domestica HOM05D003333 ORTHO05D003836 1.4e-42 177.2 171 68.4
FAN23G0545 Fragaria x ananassa HOM05D003333 ORTHO05D003836 2.3e-42 176.4 171 68.4
FAN26G2607 Fragaria x ananassa HOM05D003333 ORTHO05D003836 3.0e-42 176.0 165 70.9
Glyma.02G205200 Glycine max HOM05D003333 ORTHO05D003836 5.1e-42 175.3 170 71.2
Hund08925 Selenicereus undatus HOM05D003333 ORTHO05D003836 8.8e-42 174.5 171 70.8
FvH4_1g00760 Fragaria vesca HOM05D003333 ORTHO05D003836 2.6e-41 172.9 171 67.8
FAN28G1118 Fragaria x ananassa HOM05D003333 ORTHO05D003836 2.6e-41 172.9 171 67.8
Sp6g19570 Schrenkiella parvula HOM05D003333 ORTHO05D003836 9.7e-41 171.0 167 51.5
ATR0019G010 Amborella trichopoda HOM05D003333 ORTHO05D003836 8.2e-40 167.9 171 48.5
Sed0000092 Sechium edule HOM05D003333 ORTHO05D003836 8.2e-40 167.9 171 66.7
Oeu018383.3 Olea europaea HOM05D003333 ORTHO05D003836 1.4e-39 167.2 108 74.1
AUR62025341 Chenopodium quinoa HOM05D003333 ORTHO05D003836 1.8e-39 166.8 168 70.2
PGR142G2767 Punica granatum HOM05D003333 ORTHO05D003836 4.1e-39 165.6 112 67.9
ClCG02G014400 Citrullus lanatus HOM05D003333 ORTHO05D003836 1.6e-38 163.7 170 67.6
Ah.14g084580 Amaranthus hybridus HOM05D003333 ORTHO05D003836 4.5e-38 162.2 171 66.1
CARHR271670 Cardamine hirsuta HOM05D003333 ORTHO05D003836 1.0e-37 161.0 167 67.1
A10p15260 Brassica napus HOM05D003333 ORTHO05D003836 1.7e-37 160.2 168 47.0
BraA10t43607Z Brassica rapa HOM05D003333 ORTHO05D003836 1.7e-37 160.2 168 47.0
Carub.0008s1843 Capsella rubella HOM05D003333 ORTHO05D003836 3.8e-37 159.1 167 64.1
CDE04G3371 Ceratophyllum demersum HOM05D003333 ORTHO05D003836 6.5e-37 158.3 168 65.5
HPP92_013422 Vanilla planifolia HOM05D003333 ORTHO05D003836 8.5e-37 157.9 169 62.1
BolC9t57828H Brassica oleracea HOM05D003333 ORTHO05D003836 1.5e-36 157.1 168 51.2
MBI15_g18227_MAGBIO Magnolia biondii HOM05D003333 ORTHO05D003836 1.5e-36 157.1 167 66.5
AT5G57900 Arabidopsis thaliana HOM05D003333 ORTHO05D003836 1.9e-36 156.8 167 49.1
Aa31LG3G13720 Aethionema arabicum HOM05D003333 ORTHO05D003836 3.2e-36 156.0 166 66.3
MELO3C004126.2 Cucumis melo HOM05D003333 ORTHO05D003836 3.2e-36 156.0 170 68.8
Zm00001eb177870 Zea mays HOM05D003333 ORTHO05D003836 8.0e-35 151.4 167 44.9
AL8G33960 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 2.3e-34 149.8 167 47.3
Oeu021319.1 Olea europaea HOM05D003333 ORTHO05D003836 4.0e-34 149.1 170 65.9
PSO541G3342 Papaver somniferum HOM05D003333 ORTHO05D003836 4.0e-34 149.1 167 65.3
CsaV3_2G007600 Cucumis sativus L. HOM05D003333 ORTHO05D003836 8.8e-34 147.9 170 65.3
Nitab4.5_0002724g0090 Nicotiana tabacum HOM05D003333 ORTHO05D003836 8.8e-34 147.9 106 67.0
C09p49770 Brassica napus HOM05D003333 ORTHO05D003836 1.1e-33 147.5 168 49.4
Nitab4.5_0002320g0010 Nicotiana tabacum HOM05D003333 ORTHO05D003836 2.6e-33 146.4 106 65.1
Solyc07g005750.3 Solanum lycopersicum HOM05D003333 ORTHO05D003836 7.5e-33 144.8 101 68.3
THA.LOC104803544 Tarenaya hassleriana HOM05D003333 ORTHO05D003836 7.5e-33 144.8 168 61.9
Sopen07g001850 Solanum pennellii HOM05D003333 ORTHO05D003836 9.7e-33 144.4 101 68.3
PGSC0003DMG400011146 Solanum tuberosum HOM05D003333 ORTHO05D003836 1.3e-32 144.1 102 65.7
SEGI_02706 Sequoiadendron giganteum HOM05D003333 ORTHO05D003836 2.4e-31 139.8 164 56.1
Thhalv10014217m.g Eutrema salsugineum HOM05D003333 ORTHO05D003836 2.2e-29 133.3 167 59.3
Thhalv10014209m.g Eutrema salsugineum HOM05D003333 ORTHO05D003836 2.9e-29 132.9 171 58.5
SEGI_29061 Sequoiadendron giganteum HOM05D003333 ORTHO05D003836 1.6e-27 127.1 165 54.5
CDE02G3474 Ceratophyllum demersum HOM05D003333 ORTHO05D003836 1.4e-26 124.0 119 52.1
FvH4_5g27040 Fragaria vesca HOM05D003333 ORTHO05D003836 1.4e-26 124.0 167 55.7
AUR62028342 Chenopodium quinoa HOM05D003333 ORTHO05D003836 1.8e-26 123.6 144 67.4
FAN13G1111 Fragaria x ananassa HOM05D003333 ORTHO05D003836 5.7e-25 118.6 164 50.0
THA.LOC104811832 Tarenaya hassleriana HOM05D003333 ORTHO05D003836 5.7e-25 118.6 166 53.0
BcaB05g24930 Brassica carinata HOM05D003333 ORTHO05D003836 9.8e-25 117.9 164 37.8
CAN.G160.47 Capsicum annuum HOM05D003333 ORTHO05D003836 9.8e-25 117.9 102 60.8
BcaB03g12653 Brassica carinata HOM05D003333 ORTHO05D003836 1.3e-24 117.5 164 40.2
CARHR238520 Cardamine hirsuta HOM05D003333 ORTHO05D003836 1.3e-24 117.5 170 39.4
AL7G21500 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 2.8e-24 116.3 170 55.9
AT4G30640 Arabidopsis thaliana HOM05D003333 ORTHO05D003836 7.0e-23 111.7 170 54.7
AUR62025340 Chenopodium quinoa HOM05D003333 ORTHO05D003836 9.1e-23 111.3 144 64.6
Sp7g28550 Schrenkiella parvula HOM05D003333 ORTHO05D003836 1.6e-22 110.5 170 53.5
BcaNung04558 Brassica carinata HOM05D003333 ORTHO05D003836 2.7e-22 109.8 165 47.9
A08p19150 Brassica napus HOM05D003333 ORTHO05D003836 2.7e-22 109.8 170 54.7
BraA08t33876Z Brassica rapa HOM05D003333 ORTHO05D003836 2.7e-22 109.8 170 54.7
Aa31LG2G19780 Aethionema arabicum HOM05D003333 ORTHO05D003836 4.5e-22 109.0 158 55.7
BraA01t00704Z Brassica rapa HOM05D003333 ORTHO05D003836 3.8e-21 105.9 162 54.3
FAN08G3193 Fragaria x ananassa HOM05D003333 ORTHO05D003836 3.8e-21 105.9 168 53.6
BcaNung02970 Brassica carinata HOM05D003333 ORTHO05D003836 5.0e-21 105.5 170 51.8
MD15G1151100 Malus domestica HOM05D003333 ORTHO05D003836 5.0e-21 105.5 115 73.0
Carub.0007s0992 Capsella rubella HOM05D003333 ORTHO05D003836 1.5e-20 104.0 170 52.9
FAN26G3012 Fragaria x ananassa HOM05D003333 ORTHO05D003836 3.2e-20 102.8 168 53.0
FAN16G1551 Fragaria x ananassa HOM05D003333 ORTHO05D003836 7.2e-20 101.7 165 53.3
BcaNung00576 Brassica carinata HOM05D003333 ORTHO05D003836 9.4e-20 101.3 165 46.1
C07p58110 Brassica napus HOM05D003333 ORTHO05D003836 9.4e-20 101.3 165 46.1
SGA_v2.0_scaffold65G22225 Striga asiatica HOM05D003333 ORTHO05D003836 1.6e-19 100.5 191 34.6
BcaC09g51858 Brassica carinata HOM05D003333 ORTHO05D003836 3.6e-19 99.4 169 50.9
A03p60210 Brassica napus HOM05D003333 ORTHO05D003836 4.7e-19 99.0 165 47.3
C01p08250 Brassica napus HOM05D003333 ORTHO05D003836 4.7e-19 99.0 169 50.9
BolC1t00813H Brassica oleracea HOM05D003333 ORTHO05D003836 4.7e-19 99.0 169 50.9
A01p07610 Brassica napus HOM05D003333 ORTHO05D003836 6.1e-19 98.6 110 43.6
Sp7g28530 Schrenkiella parvula HOM05D003333 ORTHO05D003836 8.0e-19 98.2 169 39.6
Sp7g28520 Schrenkiella parvula HOM05D003333 ORTHO05D003836 1.4e-18 97.4 167 52.7
FAN21G3730 Fragaria x ananassa HOM05D003333 ORTHO05D003836 8.8e-18 94.7 163 52.1
BolC3t21167H Brassica oleracea HOM05D003333 ORTHO05D003836 2.6e-17 93.2 158 54.4
BcaNung04560 Brassica carinata HOM05D003333 ORTHO05D003836 7.5e-17 91.7 167 54.5
Aa31LG2G19840 Aethionema arabicum HOM05D003333 ORTHO05D003836 9.8e-17 91.3 158 51.9
Aa31LG2G19860 Aethionema arabicum HOM05D003333 ORTHO05D003836 1.3e-16 90.9 164 51.2
FAN18G2716 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.3e-16 90.9 159 37.7
Aa31LG2G19800 Aethionema arabicum HOM05D003333 ORTHO05D003836 1.7e-16 90.5 145 37.2
FAN04G1412 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.8e-15 87.0 83 55.4
BcaC09g51854 Brassica carinata HOM05D003333 ORTHO05D003836 2.4e-15 86.7 162 45.1
BolC1t00817H Brassica oleracea HOM05D003333 ORTHO05D003836 2.4e-15 86.7 162 45.1
BcaC09g51853 Brassica carinata HOM05D003333 ORTHO05D003836 7.0e-15 85.1 105 43.8
Peaxi162Scf00753g00011 Petunia axillaris HOM05D003333 ORTHO05D003836 9.2e-15 84.7 61 67.2
BolC7t46269H Brassica oleracea HOM05D003333 ORTHO05D003836 1.6e-14 84.0 163 35.0
AagrBONN_evm.TU.Sc2ySwM_368.1612 Anthoceros agrestis HOM05D003333 ORTHO05D003836 2.0e-14 83.6 163 47.2
A03p60160 Brassica napus HOM05D003333 ORTHO05D003836 3.5e-14 82.8 164 53.7
FAN18G3430 Fragaria x ananassa HOM05D003333 ORTHO05D003836 3.5e-14 82.8 72 56.9
BcaNung00573 Brassica carinata HOM05D003333 ORTHO05D003836 5.9e-14 82.0 164 51.2
C07p58070 Brassica napus HOM05D003333 ORTHO05D003836 5.9e-14 82.0 164 52.4
BolC7t46266H Brassica oleracea HOM05D003333 ORTHO05D003836 5.9e-14 82.0 164 52.4
Aa31LG2G19790 Aethionema arabicum HOM05D003333 ORTHO05D003836 7.7e-14 81.6 158 50.6
AL5G22560 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 7.7e-14 81.6 73 54.8
BcaNung00575 Brassica carinata HOM05D003333 ORTHO05D003836 1.1e-12 77.8 163 52.1
BcaNung04559 Brassica carinata HOM05D003333 ORTHO05D003836 3.3e-12 76.3 165 50.3
C01p08310 Brassica napus HOM05D003333 ORTHO05D003836 4.3e-12 75.9 74 50.0
C07p58100 Brassica napus HOM05D003333 ORTHO05D003836 2.8e-11 73.2 75 50.7
TPR.G5485 Trifolium pratense HOM05D003333 ORTHO05D003836 1.8e-10 70.5 88 47.7
Carub.0005s1014 Capsella rubella HOM05D003333 ORTHO05D003836 4.0e-10 69.3 164 29.3
TPR.G5421 Trifolium pratense HOM05D003333 ORTHO05D003836 4.0e-10 69.3 79 49.4
FAN24G1283 Fragaria x ananassa HOM05D003333 ORTHO05D003836 2.0e-09 67.0 51 60.8
FvH4_5g27030 Fragaria vesca HOM05D003333 ORTHO05D003836 3.4e-09 66.2 163 44.2
Mapoly0006s0173 Marchantia polymorpha HOM05D003333 ORTHO05D003836 9.2e-07 58.2 160 24.4
Mapoly0003s0037 Marchantia polymorpha HOM05D003333 ORTHO05D003836 2.7e-06 56.6 160 45.0
Medtr4g130630 Medicago truncatula HOM05D003333 ORTHO05D003836 4.6e-06 55.8 45 57.8
Cc00_g18500 Coffea canephora HOM05D000710 ORTHO05D000336 7.8e-06 55.1 70 41.4


User provided reference genes

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