Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 1.3e-73 279.6 138 100.0
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 2.6e-55 218.8 136 79.4
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.0e-47 192.6 134 73.1
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 7.2e-45 184.1 135 68.9
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.2e-45 184.1 133 69.9
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.7e-44 182.2 135 67.4
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.3e-43 179.1 130 69.2
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.0e-42 176.0 134 64.2
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 7.0e-40 167.5 135 63.0
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 4.5e-39 164.9 134 62.7
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 3.8e-38 161.8 136 61.8
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 3.8e-38 161.8 134 61.9
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 3.8e-38 161.8 136 62.5
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 2.5e-37 159.1 134 60.4
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 5.5e-37 157.9 137 59.1
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.2e-36 156.8 135 63.0
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.0e-35 153.7 130 65.4
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.8e-35 152.9 136 58.8
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.2e-34 150.2 138 59.4
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.2e-34 150.2 126 61.1
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.2e-34 150.2 136 59.6
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.3e-33 146.7 134 60.4
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 3.7e-33 145.2 130 56.9
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 3.7e-33 145.2 130 56.2
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 4.9e-33 144.8 131 59.5
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.9e-33 144.8 134 59.0
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 4.9e-33 144.8 134 53.7
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 6.3e-33 144.4 138 54.3
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.3e-33 144.1 134 59.7
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.4e-32 143.3 134 59.7
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.4e-32 143.3 130 55.4
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.8e-32 142.9 129 55.0
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.4e-32 142.5 105 69.5
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 3.5e-31 138.7 127 60.6
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 4.5e-31 138.3 135 57.0
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 4.5e-31 138.3 138 56.5
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.5e-31 138.3 138 56.5
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 4.5e-31 138.3 117 59.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 5.9e-31 137.9 135 54.8
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.3e-30 136.7 138 56.5
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.3e-30 136.7 134 57.5
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.7e-30 136.3 134 57.5
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.8e-30 135.2 104 68.3
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 5.0e-30 134.8 135 54.1
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 6.6e-30 134.4 130 57.7
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.1e-29 133.7 135 54.8
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 3.3e-29 132.1 136 53.7
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.2e-29 131.0 99 68.7
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.6e-28 129.8 129 55.8
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 4.7e-28 128.3 131 48.1
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 6.1e-28 127.9 125 56.0
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 6.1e-28 127.9 130 53.8
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 8.0e-28 127.5 135 53.3
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.0e-27 127.1 135 54.1
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.4e-27 126.7 126 52.4
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.8e-27 126.3 134 49.3
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 3.0e-27 125.6 134 52.2
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 3.0e-27 125.6 132 51.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 6.8e-27 124.4 130 51.5
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.8e-27 124.4 137 51.8
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 6.8e-27 124.4 132 48.5
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 6.8e-27 124.4 135 50.4
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 8.9e-27 124.0 168 40.5
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 8.9e-27 124.0 131 47.3
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 8.9e-27 124.0 132 49.2
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.0e-26 122.9 132 50.8
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 7.5e-26 120.9 136 52.2
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 3.7e-25 118.6 132 50.0
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 8.3e-25 117.5 132 49.2
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 8.3e-25 117.5 128 46.1
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.1e-24 117.1 144 49.3
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.4e-24 116.7 130 48.5
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.8e-24 116.3 163 43.6
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.4e-24 115.9 137 49.6
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 5.4e-24 114.8 130 49.2
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 7.0e-24 114.4 131 52.7
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 9.2e-24 114.0 135 48.1
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.6e-23 113.2 141 46.8
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.7e-23 112.5 134 44.8
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.7e-23 112.5 159 45.9
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.7e-23 112.5 128 50.0
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 4.6e-23 111.7 135 48.1
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 4.6e-23 111.7 130 45.4
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.9e-22 108.6 101 54.5
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 3.9e-22 108.6 117 48.7
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 6.6e-22 107.8 137 44.5
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 2.5e-21 105.9 119 49.6
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 4.3e-21 105.1 135 42.2
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 7.3e-21 104.4 131 44.3
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 7.3e-21 104.4 131 44.3
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.2e-20 103.6 110 50.9
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 2.8e-20 102.4 141 41.1
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 8.0e-20 100.9 126 41.3
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.0e-19 100.5 129 45.0
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.8e-19 99.8 139 44.6
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 4.0e-19 98.6 132 44.7
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 4.4e-18 95.1 137 41.6
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.7e-17 93.2 137 43.8
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 3.7e-17 92.0 120 47.5
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 6.4e-17 91.3 126 45.2
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 6.4e-17 91.3 126 45.2
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 8.3e-17 90.9 130 44.6
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.9e-16 89.7 126 44.4
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 2.4e-16 89.4 126 43.7
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 2.4e-16 89.4 90 52.2
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 4.1e-16 88.6 115 49.6
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 4.1e-16 88.6 126 44.4
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 4.1e-16 88.6 126 44.4
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 4.1e-16 88.6 115 49.6
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 4.1e-16 88.6 126 42.1
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.0e-16 87.8 125 44.0
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 7.0e-16 87.8 126 43.7
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-15 87.0 107 50.5
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.2e-15 87.0 137 41.6
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.6e-15 86.7 115 47.8
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.6e-15 85.1 122 42.6
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 4.6e-15 85.1 84 51.2
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 7.8e-15 84.3 93 50.5
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.0e-14 82.4 122 41.8
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 3.9e-14 82.0 126 38.1
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 1.1e-13 80.5 107 45.8
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.3e-13 78.6 113 41.6
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 9.5e-13 77.4 113 41.6
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.6e-12 76.6 128 40.6
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.6e-12 75.5 104 39.4
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 1.1e-11 73.9 86 50.0
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.1e-11 73.9 104 39.4
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.4e-11 73.6 51 64.7
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 2.3e-11 72.8 66 60.6
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 2.3e-11 72.8 86 48.8
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 3.1e-11 72.4 70 55.7
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 5.2e-11 71.6 99 41.4
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.6e-10 69.3 104 37.5
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 9.8e-10 67.4 95 43.2
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.2e-07 60.5 49 65.3
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 7.8e-07 57.8 53 56.6


User provided reference genes

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