Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41932 Davidia involucrata HOM05D001601 ORTHO05D002628 8.6e-111 403.7 205 100.0
Dinv14116 Davidia involucrata HOM05D001601 ORTHO05D002628 1.3e-37 160.6 210 55.7
Cfa005256 Carpinus fangiana HOM05D001601 ORTHO05D002628 2.9e-34 149.4 177 55.4
Haze_02127 Corylus avellana HOM05D001601 ORTHO05D002628 5.0e-34 148.7 164 56.7
QL11p050977 Quercus lobata HOM05D001601 ORTHO05D002628 1.4e-31 140.6 202 52.0
CiPaw.05G083200 Carya illinoinensis HOM05D001601 ORTHO05D002628 4.0e-31 139.0 173 52.6
CiPaw.06G121200 Carya illinoinensis HOM05D001601 ORTHO05D002628 5.2e-31 138.7 174 54.0
Thecc.02G058200 Theobroma cacao HOM05D001601 ORTHO05D002628 8.5e-26 121.3 153 53.6
Hma1.2p1_0032F.1_g019320 Hydrangea macrophylla HOM05D001601 ORTHO05D002628 1.9e-25 120.2 211 46.4
Manes.04G072000 Manihot esculenta HOM05D001601 ORTHO05D002628 9.4e-25 117.9 157 55.4
COL.COLO4_17355 Corchorus olitorius HOM05D001601 ORTHO05D002628 2.7e-24 116.3 158 51.9
Prupe.8G166800 Prunus persica HOM05D001601 ORTHO05D002628 2.6e-22 109.8 187 48.7
Ciclev10030105m.g Citrus clementina HOM05D001601 ORTHO05D002628 2.8e-21 106.3 194 46.9
Rhsim05G0054200 Rhododendron simsii HOM05D001601 ORTHO05D002628 8.3e-21 104.8 157 52.9
Duzib132G1094 Durio zibethinus HOM05D001601 ORTHO05D002628 1.1e-20 104.4 179 48.0
Gorai.008G036900 Gossypium raimondii HOM05D001601 ORTHO05D002628 1.4e-20 104.0 185 47.6
Gohir.A12G036800 Gossypium hirsutum HOM05D001601 ORTHO05D002628 3.1e-20 102.8 187 47.1
GSVIVG01013720001 Vitis vinifera HOM05D001601 ORTHO05D002628 1.6e-19 100.5 153 52.3
Gohir.D12G035600 Gossypium hirsutum HOM05D001601 ORTHO05D002628 2.0e-19 100.1 183 47.5
Sabra09G0105900 Salix brachista HOM05D001601 ORTHO05D002628 2.0e-19 100.1 201 45.3
MD05G1122900 Malus domestica HOM05D001601 ORTHO05D002628 5.9e-19 98.6 182 45.6
Potri.009G136300 Populus trichocarpa HOM05D001601 ORTHO05D002628 5.9e-19 98.6 173 49.7
Cc04_g12140 Coffea canephora HOM05D001601 ORTHO05D002628 7.7e-19 98.2 192 44.3
ClCG02G004010 Citrullus lanatus HOM05D001601 ORTHO05D002628 1.0e-18 97.8 184 45.1
TAR381G1205 Trochodendron aralioides HOM05D001601 ORTHO05D002628 2.9e-18 96.3 177 45.2
Prupe.8G166900 Prunus persica HOM05D001601 ORTHO05D002628 6.5e-18 95.1 186 41.9
CSS0003134 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 1.5e-17 94.0 82 68.3
Lj5g0000172 Lotus japonicus HOM05D001601 ORTHO05D002628 1.9e-17 93.6 170 47.1
Rhsim05G0054400 Rhododendron simsii HOM05D001601 ORTHO05D002628 2.1e-16 90.1 149 51.0
Sed0019722 Sechium edule HOM05D001601 ORTHO05D002628 8.0e-16 88.2 174 42.5
CsaV3_5G026500 Cucumis sativus L. HOM05D001601 ORTHO05D002628 1.0e-15 87.8 184 42.4
TAR625G1180 Trochodendron aralioides HOM05D001601 ORTHO05D002628 1.8e-15 87.0 162 42.6
CSS0000255 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 3.0e-15 86.3 65 78.5
Glyma.20G107466 Glycine max HOM05D001601 ORTHO05D002628 4.0e-15 85.9 166 42.2
Lsat_1_v5_gn_4_71800 Lactuca sativa HOM05D001601 ORTHO05D002628 5.2e-15 85.5 125 50.4
CANSAT25G3111 Cannabis sativa HOM05D001601 ORTHO05D002628 8.8e-15 84.7 211 38.4
VMungo0720G1541 Vigna mungo HOM05D001601 ORTHO05D002628 2.6e-14 83.2 168 39.9
EL10Ac9g21368 Beta vulgaris HOM05D001601 ORTHO05D002628 3.4e-14 82.8 184 37.0
ECA234G0339 Erigeron canadensis HOM05D001601 ORTHO05D002628 4.4e-14 82.4 150 45.3
Cpa.g.sc20.95 Carica papaya HOM05D001601 ORTHO05D002628 1.3e-13 80.9 154 44.8
MELO3C021653.2 Cucumis melo HOM05D001601 ORTHO05D002628 1.3e-13 80.9 158 44.9
Glyma.10G281800 Glycine max HOM05D001601 ORTHO05D002628 1.7e-13 80.5 165 40.0
RcHm_v2.0_Chr6g0278441 Rosa chinensis HOM05D001601 ORTHO05D002628 2.2e-13 80.1 171 43.9
FvH4_2g15460 Fragaria vesca HOM05D001601 ORTHO05D002628 3.7e-13 79.3 185 41.6
FAN24G0324 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.1e-12 77.8 185 41.1
MSTRG.16976 Avicennia marina HOM05D001601 ORTHO05D002628 1.8e-12 77.0 162 44.4
AUR62013022 Chenopodium quinoa HOM05D001601 ORTHO05D002628 9.2e-12 74.7 84 53.6
Eucgr.G01783 Eucalyptus grandis HOM05D001601 ORTHO05D002628 9.2e-12 74.7 143 41.3
TPR.G2429 Trifolium pratense HOM05D001601 ORTHO05D002628 9.2e-12 74.7 165 41.2
Medtr1g112680 Medicago truncatula HOM05D001601 ORTHO05D002628 1.2e-11 74.3 177 37.9
Nn3g19711 Nelumbo nucifera HOM05D001601 ORTHO05D002628 1.2e-11 74.3 165 38.2
MBI08_g34004_MAGBIO Magnolia biondii HOM05D001601 ORTHO05D002628 1.6e-11 73.9 179 42.5
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 2.7e-11 73.2 170 42.4
Oeu015560.1 Olea europaea HOM05D001601 ORTHO05D002628 4.5e-11 72.4 131 47.3
AUR62010034 Chenopodium quinoa HOM05D001601 ORTHO05D002628 5.9e-11 72.0 84 52.4
Psat6g232480 Pisum sativum HOM05D001601 ORTHO05D002628 5.9e-11 72.0 141 44.7
SHI05752 Sapria himalayana HOM05D001601 ORTHO05D002628 1.3e-10 70.9 136 42.6
RcHm_v2.0_Chr6g0278471 Rosa chinensis HOM05D001601 ORTHO05D002628 1.7e-10 70.5 192 40.6
PGR042G3640 Punica granatum HOM05D001601 ORTHO05D002628 2.3e-10 70.1 200 36.5
TWI31G0590 Tripterygium wilfordii HOM05D001601 ORTHO05D002628 2.3e-10 70.1 187 38.5
THA.LOC104819650 Tarenaya hassleriana HOM05D001601 ORTHO05D002628 2.9e-10 69.7 171 42.7
MD10G1125700 Malus domestica HOM05D001601 ORTHO05D002628 5.0e-10 68.9 87 55.2
Aqoxy2G01591 Aquilegia oxysepala HOM05D001601 ORTHO05D002628 1.1e-09 67.8 115 47.8
FAN15G2735 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.9e-09 67.0 183 39.3
Oeu015561.1 Olea europaea HOM05D001601 ORTHO05D002628 1.9e-09 67.0 110 50.9
Atru.chr5.3376 Acer truncatum HOM05D001601 ORTHO05D002628 2.5e-09 66.6 159 42.8
Lalb_Chr02g0143431 Lupinus albus HOM05D001601 ORTHO05D002628 2.5e-09 66.6 169 40.8
arahy.Tifrunner.gnm1.ann1.GJBP3C Arachis hypogaea HOM05D001601 ORTHO05D002628 3.3e-09 66.2 127 43.3
arahy.Tifrunner.gnm1.ann1.W4LCKL Arachis hypogaea HOM05D001601 ORTHO05D002628 3.3e-09 66.2 127 43.3
Phvul.007G019000 Phaseolus vulgaris HOM05D001601 ORTHO05D002628 5.6e-09 65.5 148 39.9
Thhalv10022620m.g Eutrema salsugineum HOM05D001601 ORTHO05D002628 7.3e-09 65.1 119 47.1
Solyc08g062780.2 Solanum lycopersicum HOM05D001601 ORTHO05D002628 9.5e-09 64.7 148 41.9
Sopen08g018260 Solanum pennellii HOM05D001601 ORTHO05D002628 9.5e-09 64.7 148 41.9
PGSC0003DMG400008195 Solanum tuberosum HOM05D001601 ORTHO05D002628 9.5e-09 64.7 148 41.2
CAN.G432.3 Capsicum annuum HOM05D001601 ORTHO05D002628 1.2e-08 64.3 148 40.5
GSVIVG01024008001 Vitis vinifera HOM05D001601 ORTHO05D002628 1.2e-08 64.3 135 44.4
THA.LOC104819656 Tarenaya hassleriana HOM05D001601 ORTHO05D002628 2.1e-08 63.5 152 41.4
AT2G16910 Arabidopsis thaliana HOM05D001601 ORTHO05D002628 4.7e-08 62.4 68 61.8
TWI75G1106 Tripterygium wilfordii HOM05D001601 ORTHO05D002628 8.0e-08 61.6 140 40.7
AL3G49670 Arabidopsis lyrata HOM05D001601 ORTHO05D002628 1.4e-07 60.8 68 60.3
Sc14g0002300 Simmondsia chinensis HOM05D001601 ORTHO05D002628 1.8e-07 60.5 80 53.8
FvH4_2g15470 Fragaria vesca HOM05D001601 ORTHO05D002628 2.3e-07 60.1 190 37.4
Carub.0003s3072 Capsella rubella HOM05D001601 ORTHO05D002628 6.8e-07 58.5 68 58.8
FAN20G1511 Fragaria x ananassa HOM05D001601 ORTHO05D002628 6.8e-07 58.5 172 36.0
TAR628G0026 Trochodendron aralioides HOM05D001601 ORTHO05D002628 6.8e-07 58.5 197 33.0
CARHR107200 Cardamine hirsuta HOM05D001601 ORTHO05D002628 8.9e-07 58.2 68 58.8
MD05G1123000 Malus domestica HOM05D001601 ORTHO05D002628 8.9e-07 58.2 202 34.7
BcaB03g16426 Brassica carinata HOM05D001601 ORTHO05D002628 1.2e-06 57.8 68 57.4
BcaC06g36193 Brassica carinata HOM05D001601 ORTHO05D002628 1.5e-06 57.4 119 44.5
C07p06690 Brassica napus HOM05D001601 ORTHO05D002628 1.5e-06 57.4 119 44.5
BolC7t41091H Brassica oleracea HOM05D001601 ORTHO05D002628 1.5e-06 57.4 119 44.5
Migut.B01188 Erythranthe guttata HOM05D001601 ORTHO05D002628 1.5e-06 57.4 181 38.7
Aa31LG8G14100 Aethionema arabicum HOM05D001601 ORTHO05D002628 3.4e-06 56.2 133 42.9


User provided reference genes

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