Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 5.0e-191 671.0 353 100.0
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.8e-161 572.8 341 84.8
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.6e-160 569.7 341 83.3
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.5e-160 568.2 341 84.8
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.0e-159 567.0 341 83.9
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.7e-159 566.2 341 83.3
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.1e-158 563.5 341 83.9
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 5.6e-158 561.2 341 82.1
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 2.1e-157 559.3 341 82.1
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 4.7e-157 558.1 341 81.8
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 4.7e-157 558.1 341 81.8
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 8.0e-157 557.4 341 81.5
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.0e-156 557.0 341 83.6
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.8e-156 556.2 341 81.5
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 2.3e-156 555.8 341 81.5
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 5.2e-156 554.7 341 83.0
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.0e-155 552.7 341 80.6
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 2.6e-155 552.4 341 82.1
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.6e-155 552.4 341 80.4
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 4.4e-155 551.6 341 81.8
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 4.4e-155 551.6 341 81.2
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 4.4e-155 551.6 341 82.7
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 7.5e-155 550.8 341 82.4
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 9.8e-155 550.4 341 81.2
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.3e-154 550.1 341 81.5
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.3e-154 550.1 341 80.4
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 2.2e-154 549.3 341 81.5
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.9e-154 548.9 341 81.2
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.9e-154 548.9 341 80.6
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.9e-154 548.9 341 81.8
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 2.9e-154 548.9 341 80.6
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.7e-154 548.5 341 81.2
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 3.7e-154 548.5 341 81.2
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 3.7e-154 548.5 340 80.6
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.7e-154 548.5 341 83.3
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 4.9e-154 548.1 341 80.1
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 6.4e-154 547.7 341 80.4
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 8.3e-154 547.4 340 81.2
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 8.3e-154 547.4 341 81.2
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.1e-153 547.0 341 80.6
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.1e-153 547.0 341 80.6
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.1e-153 547.0 341 80.6
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.4e-153 546.6 341 81.2
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 4.1e-153 545.0 341 80.9
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 4.1e-153 545.0 341 80.1
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 4.1e-153 545.0 340 80.9
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 5.4e-153 544.7 341 80.6
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.6e-152 543.1 341 79.5
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.0e-152 542.7 341 79.8
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 2.7e-152 542.3 341 79.5
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 4.6e-152 541.6 341 80.6
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.7e-151 539.7 345 78.6
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.7e-151 539.7 345 78.6
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 5.0e-151 538.1 341 78.6
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.0e-151 538.1 346 78.6
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 5.0e-151 538.1 339 79.1
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.1e-150 537.0 341 78.9
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 2.5e-150 535.8 339 78.8
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 3.3e-150 535.4 341 78.9
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 4.3e-150 535.0 341 79.5
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 7.3e-150 534.3 341 77.4
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 6.2e-149 531.2 341 80.4
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 8.0e-149 530.8 341 76.5
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 5.2e-148 528.1 341 77.7
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 8.9e-148 527.3 341 76.8
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.2e-147 526.9 341 77.7
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.2e-147 526.9 341 78.9
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 2.6e-147 525.8 341 79.5
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 4.4e-147 525.0 341 76.8
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 4.4e-147 525.0 341 77.7
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 4.4e-147 525.0 341 76.0
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 1.7e-146 523.1 339 77.6
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 2.2e-146 522.7 341 75.4
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 3.7e-146 521.9 339 78.5
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 4.9e-146 521.5 341 76.2
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.4e-145 520.0 341 78.9
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 4.1e-145 518.5 339 77.9
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 2.0e-144 516.2 341 74.8
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 3.5e-144 515.4 328 78.4
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 4.6e-144 515.0 341 75.1
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 4.6e-144 515.0 342 75.4
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 4.6e-144 515.0 353 74.5
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 7.8e-144 514.2 341 75.1
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 7.8e-144 514.2 341 74.2
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.3e-143 513.5 341 73.9
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.3e-143 512.7 341 75.1
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.3e-143 512.7 341 75.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.3e-143 512.7 341 75.1
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 5.0e-143 511.5 318 81.4
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.5e-142 510.0 341 74.2
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 9.5e-142 507.3 320 80.6
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.8e-141 505.8 341 73.6
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.8e-141 505.8 341 75.4
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.8e-141 505.8 341 75.4
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 6.2e-141 504.6 341 73.3
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 2.3e-140 502.7 290 90.7
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 3.1e-140 502.3 341 73.0
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 5.2e-140 501.5 341 73.3
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 5.8e-139 498.0 341 72.7
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.1e-137 493.8 311 80.4
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.6e-136 490.0 338 74.6
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.5e-131 473.4 285 83.2
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 4.4e-131 471.9 307 80.5
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.1e-126 457.2 337 70.3
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.6e-125 453.4 341 70.4
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.4e-124 450.3 282 81.2
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.8e-124 449.9 341 67.4
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 9.9e-115 417.5 295 74.2
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 7.1e-113 411.4 280 72.9
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 6.2e-109 398.3 347 61.1
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 8.1e-109 397.9 347 60.5
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 5.8e-107 391.7 349 59.9
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 1.4e-105 387.1 284 72.2
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 5.1e-103 378.6 337 57.9
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 6.7e-103 378.3 339 57.5
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.5e-102 376.3 341 58.1
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 7.4e-102 374.8 315 64.8
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.1e-92 344.4 355 54.1
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.1e-92 342.8 342 54.7
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 2.3e-87 326.6 305 57.4
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.8e-85 319.7 349 51.3
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.7e-85 319.3 342 52.6
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 5.3e-84 315.5 333 50.5
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 5.5e-81 305.4 243 66.7
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.8e-76 290.4 338 50.0
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 9.1e-76 288.1 353 46.7
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 4.8e-69 265.8 332 48.2
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 2.8e-53 213.4 149 72.5
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 8.0e-48 195.3 333 39.3
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.6e-43 181.0 222 48.2
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.8e-42 176.4 164 57.3
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.5e-25 121.3 74 75.7
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.3e-25 119.8 162 45.7
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.6e-24 117.9 74 81.1
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.1e-24 115.5 61 85.2
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 2.0e-22 110.9 94 55.3
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.9e-21 106.3 87 70.1
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-20 104.0 73 67.1
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.3e-18 98.2 98 55.1
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 4.9e-13 79.7 75 50.7
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.5e-06 58.2 83 43.4


User provided reference genes

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