Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38591 Davidia involucrata HOM05D003188 ORTHO05D003602 8.1e-100 367.1 186 100.0
Dinv36901 Davidia involucrata HOM05D003188 ORTHO05D003602 1.1e-61 240.4 183 74.9
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 1.5e-61 240.0 205 65.9
TAR371G0535 Trochodendron aralioides HOM05D003188 ORTHO05D003602 1.4e-59 233.4 208 64.9
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 1.3e-57 226.9 205 61.5
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 2.2e-57 226.1 205 61.5
TAR629G2124 Trochodendron aralioides HOM05D003188 ORTHO05D003602 8.5e-57 224.2 206 62.1
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 6.1e-55 218.0 208 61.1
Nn3g17701 Nelumbo nucifera HOM05D003188 ORTHO05D003602 3.9e-54 215.3 205 61.0
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 9.7e-53 210.7 203 60.1
Lj5A144T29 Lonicera japonica HOM05D003188 ORTHO05D003602 1.3e-52 210.3 201 62.2
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 1.7e-52 209.9 204 58.3
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 1.7e-52 209.9 205 60.5
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 5.3e-51 204.9 205 59.5
Duzib138G0729 Durio zibethinus HOM05D003188 ORTHO05D003602 7.0e-51 204.5 203 58.1
Thecc.01G174500 Theobroma cacao HOM05D003188 ORTHO05D003602 2.0e-50 203.0 204 58.8
SGA_v2.0_scaffold159G37605 Striga asiatica HOM05D003188 ORTHO05D003602 2.6e-50 202.6 204 56.4
Duzib133G0881 Durio zibethinus HOM05D003188 ORTHO05D003602 1.0e-49 200.7 204 57.8
Potri.010G102000 Populus trichocarpa HOM05D003188 ORTHO05D003602 1.7e-49 199.9 203 58.1
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 1.4e-48 196.8 207 58.0
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 1.9e-48 196.4 221 55.2
Nitab4.5_0000410g0090 Nicotiana tabacum HOM05D003188 ORTHO05D003602 2.5e-48 196.1 194 61.3
MSTRG.14163 Avicennia marina HOM05D003188 ORTHO05D003602 7.2e-48 194.5 207 56.5
Rhsim09G0110400 Rhododendron simsii HOM05D003188 ORTHO05D003602 7.2e-48 194.5 180 62.2
MSTRG.6539 Avicennia marina HOM05D003188 ORTHO05D003602 2.1e-47 193.0 202 54.5
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 3.6e-47 192.2 189 57.7
PGSC0003DMG400005704 Solanum tuberosum HOM05D003188 ORTHO05D003602 1.0e-46 190.7 207 58.0
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 1.0e-46 190.7 204 56.4
Sopen03g038640 Solanum pennellii HOM05D003188 ORTHO05D003602 3.0e-46 189.1 193 59.6
Prupe.5G216800 Prunus persica HOM05D003188 ORTHO05D003602 5.2e-46 188.3 207 56.5
SalBow7G4400 Salvia bowleyana HOM05D003188 ORTHO05D003602 5.2e-46 188.3 205 54.6
Manes.12G158000 Manihot esculenta HOM05D003188 ORTHO05D003602 6.7e-46 188.0 212 55.7
Potri.015G051000 Populus trichocarpa HOM05D003188 ORTHO05D003602 6.7e-46 188.0 205 57.6
Oeu058326.2 Olea europaea HOM05D003188 ORTHO05D003602 1.1e-45 187.2 247 48.2
Solyc03g119790.3 Solanum lycopersicum HOM05D003188 ORTHO05D003602 2.0e-45 186.4 188 59.0
Nitab4.5_0003716g0120 Nicotiana tabacum HOM05D003188 ORTHO05D003602 1.3e-44 183.7 193 60.1
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 2.2e-44 183.0 210 51.4
QL10p022977 Quercus lobata HOM05D003188 ORTHO05D003602 6.3e-44 181.4 172 59.3
MELO3C017285.2 Cucumis melo HOM05D003188 ORTHO05D003602 8.2e-44 181.0 190 55.8
CANSAT64G2546 Cannabis sativa HOM05D003188 ORTHO05D003602 1.8e-43 179.9 212 56.1
PGR083G2637 Punica granatum HOM05D003188 ORTHO05D003602 3.1e-43 179.1 207 53.1
ATR0787G140 Amborella trichopoda HOM05D003188 ORTHO05D003602 5.3e-43 178.3 206 51.5
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 7.0e-43 177.9 216 51.9
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 7.0e-43 177.9 207 53.6
Ciclev10019993m.g Citrus clementina HOM05D003188 ORTHO05D003602 9.1e-43 177.6 204 53.4
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 9.1e-43 177.6 202 53.0
Peaxi162Scf00015g00637 Petunia axillaris HOM05D003188 ORTHO05D003602 9.1e-43 177.6 172 60.5
Ah.16g101610 Amaranthus hybridus HOM05D003188 ORTHO05D003602 5.9e-42 174.9 205 53.7
Aqoxy3G00385 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 5.9e-42 174.9 207 50.2
CAN.G438.112 Capsicum annuum HOM05D003188 ORTHO05D003602 5.9e-42 174.9 210 55.2
Gohir.D07G087600 Gossypium hirsutum HOM05D003188 ORTHO05D003602 5.9e-42 174.9 216 51.4
CDE05G2945 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 1.0e-41 174.1 210 52.4
Atru.chr3.1254 Acer truncatum HOM05D003188 ORTHO05D003602 1.3e-41 173.7 225 50.7
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 2.2e-41 172.9 188 53.2
Hund13349 Selenicereus undatus HOM05D003188 ORTHO05D003602 3.8e-41 172.2 187 57.2
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 5.0e-41 171.8 205 52.2
Actinidia37847 Actinidia chinensis HOM05D003188 ORTHO05D003602 6.5e-41 171.4 205 53.2
HPP92_009419 Vanilla planifolia HOM05D003188 ORTHO05D003602 6.5e-41 171.4 206 50.0
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 8.5e-41 171.0 199 54.3
Atru.chr12.1495 Acer truncatum HOM05D003188 ORTHO05D003602 1.1e-40 170.6 187 54.5
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 1.1e-40 170.6 205 54.1
HanXRQChr02g0055261 Helianthus annuus HOM05D003188 ORTHO05D003602 2.5e-40 169.5 207 55.6
MD14G1221400 Malus domestica HOM05D003188 ORTHO05D003602 3.2e-40 169.1 205 52.7
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 7.2e-40 167.9 205 52.7
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 7.2e-40 167.9 207 49.3
Cpa.g.sc13.60 Carica papaya HOM05D003188 ORTHO05D003602 9.4e-40 167.5 266 44.7
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 1.2e-39 167.2 205 51.7
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 1.2e-39 167.2 208 48.1
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 2.1e-39 166.4 205 48.8
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 4.7e-39 165.2 204 52.5
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.7e-39 165.2 204 52.5
Migut.H01201 Erythranthe guttata HOM05D003188 ORTHO05D003602 6.1e-39 164.9 207 51.7
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 8.0e-39 164.5 195 51.8
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 1.0e-38 164.1 207 49.3
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 3.0e-38 162.5 207 48.8
Atru.chr2.2945 Acer truncatum HOM05D003188 ORTHO05D003602 8.8e-38 161.0 194 53.6
Sc02g0004270 Simmondsia chinensis HOM05D003188 ORTHO05D003602 1.2e-37 160.6 203 49.8
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 1.2e-37 160.6 205 49.3
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 2.6e-37 159.5 195 50.3
CiPaw.12G051000 Carya illinoinensis HOM05D003188 ORTHO05D003602 3.3e-37 159.1 186 50.5
vmacro10787 Vaccinium macrocarpon HOM05D003188 ORTHO05D003602 3.3e-37 159.1 159 59.7
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.4e-37 158.7 204 51.0
Gorai.007G172700 Gossypium raimondii HOM05D003188 ORTHO05D003602 9.7e-37 157.5 204 51.0
Gohir.A11G155400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.7e-36 156.8 204 51.0
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 2.2e-36 156.4 208 49.0
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 8.3e-36 154.5 205 47.8
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 1.1e-35 154.1 210 47.1
PSO017G4721 Papaver somniferum HOM05D003188 ORTHO05D003602 1.8e-35 153.3 205 48.3
Aqoxy3G03899 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 7.0e-35 151.4 195 49.7
Gohir.D11G162400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 7.0e-35 151.4 204 49.5
Lj9A216T28 Lonicera japonica HOM05D003188 ORTHO05D003602 3.5e-34 149.1 179 54.2
THA.LOC104811602 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 3.5e-34 149.1 208 48.6
PSO478G1890 Papaver somniferum HOM05D003188 ORTHO05D003602 5.9e-34 148.3 205 47.8
CiPaw.09G173500 Carya illinoinensis HOM05D003188 ORTHO05D003602 1.0e-33 147.5 204 48.5
Gohir.A07G084627 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.7e-33 146.7 199 47.7
Sabra10G0074600 Salix brachista HOM05D003188 ORTHO05D003602 2.9e-33 146.0 203 47.3
Aqoxy5G00582 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 5.0e-33 145.2 206 46.6
Carub.0007s2083 Capsella rubella HOM05D003188 ORTHO05D003602 1.1e-32 144.1 211 47.4
SEGI_20097 Sequoiadendron giganteum HOM05D003188 ORTHO05D003602 1.5e-32 143.7 223 43.5
THA.LOC104803141 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 1.9e-32 143.3 208 49.0
CSS0046008 Camellia sinensis var. sinensis HOM05D003188 ORTHO05D003602 3.2e-32 142.5 83 85.5
Carub.0001s0239 Capsella rubella HOM05D003188 ORTHO05D003602 4.2e-32 142.1 205 47.8
Zm00001eb223630 Zea mays HOM05D003188 ORTHO05D003602 2.1e-31 139.8 200 48.0
ECA234G2517 Erigeron canadensis HOM05D003188 ORTHO05D003602 2.7e-31 139.4 207 50.7
Oeu050638.1 Olea europaea HOM05D003188 ORTHO05D003602 3.6e-31 139.0 261 39.5
CDE05G1652 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 8.0e-31 137.9 182 50.0
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 8.0e-31 137.9 206 46.6
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 8.8e-30 134.4 210 44.8
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 2.0e-29 133.3 209 42.1
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 3.4e-29 132.5 208 44.2
CARHR002580 Cardamine hirsuta HOM05D003188 ORTHO05D003602 4.4e-29 132.1 209 46.9
Thhalv10023437m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 7.5e-29 131.3 192 47.9
Zm00001eb028110 Zea mays HOM05D003188 ORTHO05D003602 3.7e-28 129.0 200 45.5
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 4.8e-28 128.6 210 45.2
Hund05006 Selenicereus undatus HOM05D003188 ORTHO05D003602 1.1e-27 127.5 183 48.1
Thhalv10025149m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 4.1e-27 125.6 193 48.2
AL7G33550 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 5.4e-27 125.2 209 45.9
AT4G20340 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 9.1e-27 124.4 211 44.1
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 9.1e-27 124.4 233 39.5
VMungo1215G2257 Vigna mungo HOM05D003188 ORTHO05D003602 1.2e-26 124.0 204 40.7
Cpa.g.sc79.52 Carica papaya HOM05D003188 ORTHO05D003602 2.9e-25 119.4 176 48.9
Lj9C432G3 Lonicera japonica HOM05D003188 ORTHO05D003602 1.9e-24 116.7 145 53.1
CARHR227350 Cardamine hirsuta HOM05D003188 ORTHO05D003602 4.2e-24 115.5 190 45.8
Sp1g02280 Schrenkiella parvula HOM05D003188 ORTHO05D003602 1.2e-23 114.0 205 41.5
Mapoly0046s0071 Marchantia polymorpha HOM05D003188 ORTHO05D003602 1.6e-23 113.6 224 39.3
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 6.8e-22 108.2 217 37.3
AL1G12780 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 1.5e-21 107.1 215 41.4
AT4G20810 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 4.4e-21 105.5 182 40.1
RcHm_v2.0_Chr7g0184551 Rosa chinensis HOM05D003188 ORTHO05D003602 9.8e-21 104.4 141 45.4
Aa31LG1G9260 Aethionema arabicum HOM05D003188 ORTHO05D003602 1.7e-20 103.6 209 41.6
Pp3c27_3010 Physcomitrium patens HOM05D003188 ORTHO05D003602 2.8e-20 102.8 211 34.1
AT1G03280 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 3.7e-20 102.4 161 43.5
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 4.9e-20 102.1 189 42.9
BcaC05g24548 Brassica carinata HOM05D003188 ORTHO05D003602 6.3e-20 101.7 218 41.3
Carub.0007s2063 Capsella rubella HOM05D003188 ORTHO05D003602 6.3e-20 101.7 211 37.9
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.4e-19 100.5 188 42.0
Migut.M00376 Erythranthe guttata HOM05D003188 ORTHO05D003602 1.4e-19 100.5 179 38.5
Lsat_1_v5_gn_8_11621 Lactuca sativa HOM05D003188 ORTHO05D003602 1.8e-19 100.1 213 41.3
Lsat_1_v5_gn_6_3380 Lactuca sativa HOM05D003188 ORTHO05D003602 2.4e-19 99.8 206 40.8
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 3.1e-19 99.4 196 42.3
arahy.Tifrunner.gnm1.ann1.8N8EX2 Arachis hypogaea HOM05D003188 ORTHO05D003602 5.4e-19 98.6 209 37.8
BraA10t42457Z Brassica rapa HOM05D003188 ORTHO05D000504 7.8e-18 94.7 158 43.0
SMO196G0219 Selaginella moellendorffii HOM05D003188 ORTHO05D003602 8.6e-17 91.3 159 39.6
C01p13220 Brassica napus HOM05D003188 ORTHO05D003602 1.5e-16 90.5 189 39.2
BcaC09g51427 Brassica carinata HOM05D003188 ORTHO05D003602 1.9e-16 90.1 189 39.2
A01p11180 Brassica napus HOM05D003188 ORTHO05D003602 1.9e-16 90.1 199 39.7
BolC1t01296H Brassica oleracea HOM05D003188 ORTHO05D003602 9.5e-16 87.8 187 38.5
FAN18G3545 Fragaria x ananassa HOM05D003188 ORTHO05D003602 9.5e-16 87.8 74 64.9
BraA01t01064Z Brassica rapa HOM05D003188 ORTHO05D003602 1.8e-14 83.6 193 37.8
CDE05G0152 Ceratophyllum demersum HOM05D002339 ORTHO05D002545 1.5e-13 80.5 134 42.5
arahy.Tifrunner.gnm1.ann1.73QXIF Arachis hypogaea HOM05D003188 ORTHO05D003602 3.4e-13 79.3 209 34.4
PSO170G0558 Papaver somniferum HOM05D003188 ORTHO05D003602 4.4e-13 79.0 176 37.5
TPR.G11885 Trifolium pratense HOM05D003998 ORTHO05D005144 5.8e-13 78.6 139 45.3
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 1.7e-12 77.0 170 37.1
AagrBONN_evm.TU.Sc2ySwM_228.1658 Anthoceros agrestis HOM05D003188 ORTHO05D003602 4.9e-12 75.5 191 32.5
RcHm_v2.0_Chr1g0365801 Rosa chinensis HOM05D003188 ORTHO05D003602 8.3e-12 74.7 159 37.7
FAN13G2738 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.2e-11 72.8 82 52.4
FAN18G2667 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.1e-11 72.4 122 41.8
FAN03G2249 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.0e-09 67.8 159 34.6
FAN17G1577 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.0e-09 67.8 159 34.6
CBR_g46212 Chara braunii HOM05D003188 ORTHO05D003602 1.7e-09 67.0 215 29.8
AagrBONN_evm.TU.Sc2ySwM_344.4503 Anthoceros agrestis HOM05D003188 ORTHO05D003602 1.6e-07 60.5 152 31.6
ATR0580G251 Amborella trichopoda HOM05D003188 ORTHO05D003602 2.8e-07 59.7 162 32.1
FvH4_7g21490 Fragaria vesca HOM05D003188 ORTHO05D003602 2.8e-07 59.7 144 35.4
Lj4g0000284 Lotus japonicus HOM05D003188 ORTHO05D003602 3.6e-07 59.3 64 57.8
QL10p022987 Quercus lobata HOM05D003188 ORTHO05D003602 6.2e-07 58.5 32 84.4
FAN06G4431 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.1e-06 56.2 162 33.3
FAN06G5104 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.1e-06 56.2 162 33.3
AL7G33340 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 6.8e-06 55.1 136 33.1
CDE05G0460 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 8.9e-06 54.7 33 75.8


User provided reference genes

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