Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 0.0e+00 1213.0 961 100.0
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.4e-242 842.0 683 77.9
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 1.2e-239 833.9 657 80.2
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 5.8e-234 815.1 678 80.4
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 8.4e-225 784.6 644 77.5
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 3.3e-221 772.7 676 78.0
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 3.4e-218 762.7 663 73.9
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 4.9e-217 758.8 677 72.7
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 1.4e-216 757.3 679 73.6
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.5e-216 756.5 650 75.8
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.6e-215 753.8 671 70.3
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 3.5e-215 752.7 683 73.8
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 3.5e-215 752.7 610 77.5
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 6.0e-215 751.9 607 74.5
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 3.8e-209 732.6 683 67.9
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.8e-206 723.8 699 66.5
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 4.3e-205 719.2 679 68.2
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 4.8e-204 715.7 678 68.3
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 6.3e-204 715.3 619 76.6
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 8.2e-204 714.9 698 69.9
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 8.2e-204 714.9 619 74.2
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 3.1e-203 713.0 698 70.1
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.1e-203 713.0 628 71.3
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 4.1e-203 712.6 688 65.7
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.1e-203 712.6 650 70.2
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 6.9e-203 711.8 698 69.8
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 6.9e-203 711.8 628 71.2
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 9.0e-203 711.4 719 66.9
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.2e-202 711.1 671 69.4
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.6e-202 709.9 698 69.9
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 7.7e-202 708.4 639 72.1
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 7.7e-202 708.4 682 68.6
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 7.7e-202 708.4 700 70.1
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 1.3e-201 707.6 677 68.4
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 5.5e-200 702.2 706 67.4
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 9.4e-200 701.4 679 68.0
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 9.4e-200 701.4 707 67.0
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 2.1e-199 700.3 691 64.8
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 4.6e-199 699.1 696 66.8
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 6.1e-199 698.7 681 73.7
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 3.0e-198 696.4 669 70.4
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 5.1e-198 695.7 696 72.7
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 1.5e-197 694.1 691 66.4
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 2.0e-197 693.7 616 71.6
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 4.3e-197 692.6 675 68.7
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.3e-196 691.0 695 72.5
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 1.1e-195 688.0 645 67.6
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.5e-194 684.1 667 67.3
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 2.0e-194 683.7 677 69.0
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 2.6e-194 683.3 594 72.9
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.4e-194 682.9 647 68.8
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 1.7e-193 680.6 599 72.3
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 6.5e-193 678.7 594 72.7
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 2.5e-192 676.8 553 77.4
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 2.1e-191 673.7 717 64.6
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 7.9e-191 671.8 703 65.9
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 5.1e-190 669.1 570 73.5
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 1.5e-189 667.5 697 60.8
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 3.3e-189 666.4 706 63.0
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 7.4e-189 665.2 683 70.9
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.3e-188 664.5 717 62.5
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 4.8e-188 662.5 609 71.3
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.8e-187 660.6 633 68.4
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-186 657.9 694 68.9
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 5.9e-186 655.6 685 64.1
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 6.5e-185 652.1 699 65.8
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.5e-184 650.2 608 70.4
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 5.5e-184 649.0 699 65.4
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 7.2e-184 648.7 696 62.6
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 4.7e-183 646.0 705 64.8
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 8.0e-183 645.2 686 64.1
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 1.8e-182 644.0 582 68.2
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.8e-182 644.0 607 73.5
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 2.0e-181 640.6 678 65.5
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 1.3e-180 637.9 676 66.3
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 4.8e-180 636.0 705 57.3
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 2.7e-178 630.2 684 64.5
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 7.7e-178 628.6 685 61.5
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 5.0e-177 625.9 706 63.0
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.5e-176 624.4 588 66.8
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.2e-175 621.3 631 65.3
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.0e-174 618.2 690 60.6
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 8.8e-174 615.1 623 66.0
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 2.2e-172 610.5 624 63.9
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 2.8e-172 610.1 628 63.7
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 3.7e-172 609.8 604 67.7
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.2e-169 600.5 505 71.5
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 4.2e-168 596.3 625 68.6
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 5.5e-168 595.9 625 68.6
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 1.2e-167 594.7 511 66.7
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 3.6e-167 593.2 511 66.7
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.6e-165 587.0 612 65.0
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 3.4e-165 586.6 615 60.5
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 5.7e-165 585.9 660 60.2
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 5.4e-163 579.3 627 58.7
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 5.4e-163 579.3 627 58.7
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.6e-162 577.8 627 58.5
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 2.1e-159 567.4 690 59.0
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 4.0e-158 563.1 670 59.9
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 7.3e-152 542.3 503 64.6
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 1.5e-149 534.6 483 74.1
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 5.2e-134 483.0 521 69.1
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 3.0e-121 440.7 620 55.6
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 1.5e-117 428.3 524 59.0
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.6e-114 416.8 296 74.7
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 5.1e-113 413.3 300 72.3
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 2.1e-111 407.9 606 51.0
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.3e-97 362.1 216 83.8
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 4.1e-94 350.5 539 49.9
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 1.8e-89 335.1 518 49.0
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.9e-88 331.6 621 55.9
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 2.8e-79 301.2 333 65.2
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.8e-78 298.5 513 49.3
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 2.0e-77 295.0 500 49.8
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 2.2e-76 291.6 522 47.3
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 5.5e-75 287.0 177 83.1
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.1e-74 285.0 345 65.8
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 8.8e-73 279.6 302 59.9
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 4.0e-65 254.2 298 50.0
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.3e-63 249.2 280 60.7
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.2e-61 242.7 178 73.0
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 2.8e-50 204.9 207 58.0
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 7.0e-30 137.1 140 63.6
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 4.9e-23 114.4 88 63.6
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 1.1e-22 113.2 69 81.2
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 3.5e-21 108.2 58 87.9
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 4.6e-21 107.8 85 64.7
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 1.2e-16 93.2 318 34.9
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 3.4e-16 91.7 86 66.3
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 5.8e-16 90.9 96 55.2
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 3.8e-15 88.2 425 28.9
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 1.9e-14 85.9 82 76.8
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 4.1e-14 84.7 94 55.3
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 4.6e-13 81.3 461 23.4
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 6.0e-13 80.9 96 52.1
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 5.1e-12 77.8 176 39.8
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 2.5e-11 75.5 138 58.7
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 1.5e-08 66.2 118 47.5
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 1.5e-08 66.2 244 36.1
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 9.9e-08 63.5 49 71.4
BcaC03g15750 Brassica carinata HOM05D005307 ORTHO05D027550 1.4e-06 59.7 228 35.5
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 5.4e-06 57.8 97 38.1
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 5.4e-06 57.8 97 38.1
Mapoly0001s0473 Marchantia polymorpha HOM05D042108 ORTHO05D048733 5.4e-06 57.8 113 46.9


User provided reference genes

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