Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 0.0e+00 1288.9 738 100.0
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 0.0e+00 1152.5 738 90.5
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 5.0e-312 1074.7 732 85.2
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 1.1e-309 1066.2 736 84.8
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 2.2e-305 1052.0 738 83.5
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 5.7e-298 1027.3 732 82.7
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 7.2e-293 1010.4 752 80.7
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 2.1e-292 1008.8 739 80.9
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.7e-289 999.2 706 81.0
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 2.8e-289 998.4 734 79.7
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 1.1e-288 996.5 737 80.5
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 9.2e-288 993.4 734 79.8
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 1.6e-287 992.6 744 78.1
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 5.9e-287 990.7 706 80.5
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 1.3e-286 989.6 738 78.6
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.1e-284 982.2 802 74.4
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 4.7e-284 981.1 738 78.9
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 1.4e-283 979.5 737 79.4
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 5.2e-283 977.6 738 78.7
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 2.0e-282 975.7 743 77.8
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.4e-280 969.5 724 78.5
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 1.8e-280 969.1 706 80.9
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 3.5e-279 964.9 738 77.6
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 6.6e-278 960.7 737 76.4
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 1.1e-277 959.9 679 81.4
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 4.3e-277 958.0 739 77.8
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 2.1e-276 955.7 737 77.9
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 3.6e-276 954.9 752 76.6
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 6.2e-276 954.1 718 79.5
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 8.0e-276 953.7 703 79.4
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 1.0e-275 953.4 760 76.4
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 6.8e-275 950.7 729 77.5
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 8.9e-275 950.3 719 78.2
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 2.6e-274 948.7 734 77.9
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 4.4e-274 948.0 753 74.1
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 1.4e-272 943.0 734 76.6
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 2.4e-272 942.2 736 76.6
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 2.4e-272 942.2 735 76.9
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 4.1e-272 941.4 872 68.1
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 5.4e-272 941.0 740 77.3
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 7.0e-272 940.6 736 76.9
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 4.6e-271 937.9 732 76.2
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 4.6e-271 937.9 703 78.2
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.7e-270 936.0 736 76.8
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 4.3e-269 931.4 727 75.9
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 2.8e-268 928.7 736 76.1
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 2.3e-267 925.6 712 76.5
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 4.0e-267 924.9 680 78.8
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 5.2e-267 924.5 680 79.4
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 5.2e-267 924.5 749 75.4
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 6.8e-267 924.1 696 78.3
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 2.6e-266 922.2 736 75.7
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 2.9e-265 918.7 671 79.9
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 3.2e-264 915.2 733 74.4
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 3.2e-264 915.2 756 71.8
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 7.1e-264 914.1 681 78.7
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.7e-263 912.1 740 74.6
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 2.7e-263 912.1 708 76.7
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 3.5e-263 911.8 727 74.8
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 6.0e-263 911.0 732 74.2
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 7.8e-263 910.6 725 74.9
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.3e-262 909.8 739 74.2
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 3.0e-262 908.7 754 72.5
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 5.1e-262 907.9 729 75.9
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 6.6e-262 907.5 727 74.4
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 6.6e-262 907.5 700 76.4
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 1.5e-261 906.4 732 74.2
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 1.9e-261 906.0 768 73.0
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 3.3e-261 905.2 705 76.9
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 2.1e-260 902.5 725 74.6
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 2.8e-260 902.1 700 76.0
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 3.6e-260 901.7 734 74.7
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 6.2e-260 901.0 706 76.8
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 6.2e-260 901.0 736 74.7
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 8.1e-260 900.6 729 74.3
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 8.1e-260 900.6 730 74.7
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 6.8e-259 897.5 738 74.0
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 8.9e-259 897.1 745 72.3
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 8.9e-259 897.1 708 75.8
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 1.2e-258 896.7 696 76.4
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 1.5e-258 896.3 713 75.0
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 3.8e-257 891.7 719 74.5
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 1.9e-256 889.4 737 73.0
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 2.4e-256 889.0 746 74.1
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 4.1e-256 888.3 736 73.5
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 6.0e-255 884.4 738 72.4
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 7.8e-255 884.0 735 72.9
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 7.8e-255 884.0 738 73.6
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 3.9e-254 881.7 735 72.8
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 5.1e-254 881.3 738 73.3
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 2.5e-253 879.0 737 71.6
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 9.6e-253 877.1 728 73.6
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 1.6e-252 876.3 691 75.0
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 2.1e-252 875.9 687 75.7
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 1.1e-251 873.6 737 70.7
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 2.6e-250 869.0 738 71.8
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 3.4e-250 868.6 772 68.9
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 3.2e-248 862.1 738 71.4
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 1.2e-247 860.1 755 70.3
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 4.6e-247 858.2 751 68.8
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 6.0e-247 857.8 737 72.5
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 4.3e-245 851.7 721 72.8
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 1.3e-244 850.1 734 71.1
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 6.2e-244 847.8 686 73.0
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 3.4e-242 842.0 732 69.8
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 3.2e-240 835.5 735 69.3
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 9.3e-240 833.9 762 68.8
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 2.1e-239 832.8 698 72.6
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 1.1e-237 827.0 647 76.2
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 8.1e-236 820.8 724 71.1
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 8.4e-233 810.8 731 70.0
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.3e-227 791.6 698 69.8
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 2.5e-224 782.7 685 69.5
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 1.8e-222 776.5 748 64.8
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 3.0e-222 775.8 735 67.2
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 9.6e-221 770.8 747 64.4
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 2.7e-207 726.1 686 66.2
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 2.2e-204 716.5 704 64.1
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 2.8e-196 689.5 481 82.7
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 6.5e-193 678.3 768 56.8
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 3.5e-186 656.0 606 66.7
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.2e-175 620.9 648 58.6
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 1.8e-166 590.5 739 53.5
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 5.6e-160 568.9 549 63.8
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 7.3e-152 542.0 513 67.3
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 2.8e-151 540.0 669 52.9
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 2.1e-146 523.9 696 51.1
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 2.8e-119 433.7 391 67.3
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 7.6e-117 425.6 642 45.3
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 2.4e-78 297.7 468 47.0
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 1.8e-62 245.0 346 52.6
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 1.2e-61 242.3 216 70.4
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 4.2e-59 233.8 315 55.2
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 4.5e-53 213.8 177 71.2
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 3.3e-51 207.6 137 86.9
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.6e-51 206.8 194 63.9
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 6.8e-49 199.9 340 44.1
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 6.2e-42 176.8 242 51.7
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 1.2e-40 172.6 665 29.9
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 1.6e-37 162.2 158 62.0
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 3.3e-35 154.5 364 36.3
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 1.6e-34 152.1 120 76.7
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 6.2e-34 150.2 90 93.3
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 3.5e-29 134.4 88 80.7
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 2.3e-28 131.7 89 80.9
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 8.6e-28 129.8 162 56.2
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 5.6e-27 127.1 101 74.3
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 5.6e-27 127.1 640 27.2
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 9.5e-27 126.3 134 61.2
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 4.7e-26 124.0 91 78.0
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 6.2e-26 123.6 559 28.4
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 1.1e-25 122.9 651 26.3
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 2.0e-24 118.6 111 64.9
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 2.6e-24 118.2 99 70.7
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 7.6e-24 116.7 358 31.0
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.3e-23 115.9 104 66.3
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 1.1e-22 112.8 84 75.0
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 7.1e-22 110.2 89 74.2
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 1.2e-21 109.4 63 92.1
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 7.8e-21 106.7 73 79.5
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 7.8e-21 106.7 204 40.2
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 8.7e-20 103.2 224 41.5
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.2e-18 99.4 97 66.0
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 3.6e-18 97.8 74 75.7
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 6.2e-18 97.1 71 81.7
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 2.6e-16 91.7 200 39.0
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 1.7e-15 89.0 73 71.2
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 2.2e-15 88.6 60 83.3
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 2.7e-13 81.6 65 72.3
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 1.0e-12 79.7 79 63.3
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 1.0e-12 79.7 82 61.0
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 1.7e-12 79.0 106 50.9
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 1.5e-11 75.9 72 65.3
Actinidia32724 Actinidia chinensis HOM05D003521 ORTHO05D000476 4.3e-11 74.3 44 88.6
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 4.3e-11 74.3 211 38.9
Ca_25011_v3 Cicer arietinum L. HOM05D010632 ORTHO05D000013 9.6e-11 73.2 69 69.6
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 3.6e-10 71.2 135 46.7
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 3.1e-09 68.2 154 37.7
MBI19_g34543_MAGBIO Magnolia biondii HOM05D003521 ORTHO05D000476 2.6e-08 65.1 43 81.4
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 3.4e-08 64.7 45 75.6
Cfa026401 Carpinus fangiana HOM05D003521 ORTHO05D000476 2.2e-07 62.0 717 23.7
GSVIVG01038696001 Vitis vinifera HOM05D000906 ORTHO05D000713 5.4e-06 57.4 35 82.9


User provided reference genes

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