Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 5.3e-201 704.1 356 100.0
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 8.4e-122 441.0 303 72.9
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 8.2e-109 397.9 296 68.9
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 1.1e-105 387.5 313 63.6
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 1.8e-103 380.2 303 64.0
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 3.3e-102 375.9 303 63.7
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 1.3e-101 374.0 308 63.3
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 2.2e-101 373.2 228 77.2
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 2.8e-101 372.9 311 60.5
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 2.4e-100 369.8 308 63.3
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 4.5e-99 365.5 308 60.1
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 1.3e-98 364.0 310 61.6
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 4.2e-97 359.0 306 61.8
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 2.7e-96 356.3 311 58.5
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 2.7e-96 356.3 404 50.7
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 3.6e-96 355.9 306 60.8
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.4e-95 354.0 303 60.7
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 3.0e-95 352.8 303 60.7
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 1.1e-94 350.9 300 59.0
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.1e-94 350.9 303 61.1
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 2.0e-94 350.1 303 58.1
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 7.5e-94 348.2 309 61.8
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 1.7e-93 347.1 303 58.4
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 8.2e-93 344.7 277 64.3
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 1.1e-92 344.4 299 59.5
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 1.8e-92 343.6 307 58.0
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.8e-92 343.6 304 57.9
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 3.1e-92 342.8 296 60.8
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 5.3e-92 342.0 312 60.6
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 4.5e-91 339.0 304 60.5
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 1.3e-90 337.4 303 56.8
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 2.2e-90 336.7 277 62.8
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 2.2e-90 336.7 295 58.0
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 3.8e-90 335.9 295 57.6
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 1.1e-89 334.3 309 56.3
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 2.5e-89 333.2 316 55.7
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 7.2e-89 331.6 306 56.2
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 6.1e-88 328.6 296 60.5
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.4e-87 327.4 309 54.4
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 4.0e-87 325.9 302 58.6
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 5.2e-87 325.5 305 55.4
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 6.8e-87 325.1 297 56.6
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 7.5e-86 321.6 305 55.1
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 4.8e-85 318.9 290 56.2
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 8.3e-85 318.2 318 54.1
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.1e-84 317.8 290 56.2
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 1.7e-82 310.5 337 53.4
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 2.9e-82 309.7 309 53.7
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 6.5e-82 308.5 303 53.5
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 1.2e-80 304.3 299 53.8
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 3.6e-80 302.8 280 55.7
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 8.0e-80 301.6 295 54.9
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 1.2e-78 297.7 284 58.1
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 3.4e-78 296.2 299 55.9
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 3.4e-78 296.2 306 52.0
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 4.1e-76 289.3 306 50.0
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 5.4e-76 288.9 287 54.0
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 2.0e-75 287.0 306 50.7
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 5.9e-75 285.4 304 49.3
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 8.6e-74 281.6 304 49.3
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 8.6e-74 281.6 291 52.6
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 1.1e-73 281.2 303 48.8
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 1.5e-73 280.8 310 52.3
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.9e-73 280.4 231 61.5
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 4.3e-73 279.3 298 50.3
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 9.5e-73 278.1 303 46.9
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 1.0e-71 274.6 286 54.9
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 3.0e-71 273.1 263 56.3
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.6e-70 270.0 313 49.8
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 4.4e-70 269.2 307 48.2
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 4.4e-70 269.2 308 48.7
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 1.3e-69 267.7 305 49.5
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 8.3e-69 265.0 300 48.0
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 2.4e-68 263.5 245 52.2
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 1.2e-67 261.2 297 47.5
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 2.7e-67 260.0 302 48.7
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 5.9e-67 258.8 307 47.6
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 6.6e-66 255.4 220 57.7
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 5.6e-65 252.3 254 52.4
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 2.1e-64 250.4 313 47.3
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 2.8e-64 250.0 271 50.9
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 2.8e-64 250.0 259 54.1
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 3.6e-64 249.6 318 43.4
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 4.7e-64 249.2 308 47.4
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 8.0e-64 248.4 285 49.5
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 3.1e-63 246.5 276 50.4
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 2.0e-62 243.8 213 56.3
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 3.4e-62 243.0 308 47.7
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 7.5e-62 241.9 271 49.8
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 7.5e-62 241.9 248 53.6
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 9.8e-62 241.5 213 55.9
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 1.7e-61 240.7 238 55.5
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 9.2e-60 235.0 281 49.1
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.2e-59 234.6 299 44.5
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 3.5e-59 233.0 268 49.3
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 6.0e-59 232.3 299 44.5
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 1.2e-56 224.6 269 47.2
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 8.1e-56 221.9 308 44.8
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.4e-55 221.1 301 43.5
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 4.1e-52 209.5 302 39.4
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 6.6e-50 202.2 242 47.9
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.6e-48 197.6 325 44.6
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 3.6e-48 196.4 244 45.9
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 4.7e-48 196.1 137 63.5
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 2.0e-46 190.7 223 43.5
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.4e-44 183.7 291 45.7
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 6.0e-43 179.1 134 64.9
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 3.9e-42 176.4 193 50.8
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 1.1e-41 174.9 303 38.6
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 2.3e-34 150.6 224 39.7
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 3.3e-33 146.7 106 65.1
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 5.6e-33 146.0 202 44.1
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 7.3e-33 145.6 276 38.8
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 5.3e-31 139.4 104 62.5
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 4.5e-30 136.3 240 32.5
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 8.4e-29 132.1 222 32.9
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 2.7e-27 127.1 97 62.9
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 4.6e-27 126.3 137 46.0
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.8e-26 124.4 257 31.1
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 2.8e-24 117.1 62 88.7
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 2.8e-24 117.1 62 88.7
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 1.8e-23 114.4 94 66.0
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 7.6e-22 109.0 119 47.9
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 7.9e-19 99.0 215 29.3
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 1.5e-14 84.7 58 63.8
TAR636G2555 Trochodendron aralioides HOM05D005876 ORTHO05D007326 6.5e-13 79.3 122 45.1
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 2.3e-10 70.9 138 32.6
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 7.4e-09 65.9 147 27.2


User provided reference genes

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