Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 3.7e-96 354.8 167 100.0
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 5.4e-95 350.9 167 98.8
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 8.1e-83 310.5 167 83.2
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 3.8e-80 301.6 166 80.1
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 4.9e-80 301.2 165 81.2
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.4e-79 299.7 165 80.6
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.9e-79 299.3 163 84.0
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.1e-79 297.4 164 79.9
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 7.8e-78 293.9 167 82.0
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.5e-76 289.7 166 78.3
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.9e-76 289.3 167 78.4
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.5e-76 288.9 166 78.3
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 2.5e-76 288.9 166 78.3
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 4.3e-76 288.1 162 78.4
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 9.6e-76 287.0 163 77.3
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 2.1e-75 285.8 163 77.9
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 1.4e-74 283.1 162 77.2
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 2.4e-74 282.3 166 75.3
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 3.1e-74 282.0 166 76.5
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 5.2e-74 281.2 166 75.3
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 6.9e-74 280.8 165 77.6
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 9.0e-74 280.4 165 75.2
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.5e-73 279.6 164 76.8
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.5e-73 279.6 164 76.8
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.5e-73 279.6 167 75.4
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 2.0e-73 279.3 163 75.5
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 3.4e-73 278.5 163 74.2
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 3.4e-73 278.5 167 76.0
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 5.8e-73 277.7 161 76.4
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 5.8e-73 277.7 161 76.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 2.2e-72 275.8 165 75.8
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.9e-72 275.4 162 75.3
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 3.8e-72 275.0 164 74.4
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 6.4e-72 274.2 164 75.6
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.1e-71 273.5 161 75.8
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.9e-71 272.7 160 76.2
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.9e-71 272.7 192 67.7
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 3.2e-71 271.9 162 74.7
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 3.2e-71 271.9 165 70.3
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 9.3e-71 270.4 165 72.1
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 9.3e-71 270.4 166 72.9
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.2e-70 270.0 158 72.8
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.6e-70 269.6 162 73.5
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.6e-70 269.6 165 73.3
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.6e-70 269.6 165 73.3
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.7e-70 268.9 165 73.3
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.7e-69 266.2 165 70.3
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 3.0e-69 265.4 164 73.8
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 5.1e-69 264.6 164 72.0
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 8.7e-69 263.8 163 69.3
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 8.7e-69 263.8 164 73.8
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 8.7e-69 263.8 154 77.3
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.1e-68 263.5 163 73.0
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-68 263.1 165 71.5
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 3.3e-68 261.9 167 70.1
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 9.6e-68 260.4 165 71.5
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 9.6e-68 260.4 180 67.8
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.6e-67 259.6 161 70.2
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.6e-67 259.6 163 70.6
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.1e-67 259.2 163 68.7
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 2.1e-67 259.2 166 70.5
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.8e-67 258.8 153 75.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 4.8e-67 258.1 162 71.6
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 8.1e-67 257.3 162 71.6
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 8.1e-67 257.3 167 67.1
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.8e-66 256.1 167 70.7
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 2.4e-66 255.8 163 69.9
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 3.1e-66 255.4 161 70.2
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 5.3e-66 254.6 161 70.2
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.2e-65 253.4 162 67.3
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 2.0e-65 252.7 162 64.2
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 3.4e-65 251.9 166 68.1
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 5.8e-65 251.1 180 63.9
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 7.6e-65 250.8 157 66.9
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 2.9e-64 248.8 162 64.8
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 3.8e-64 248.4 157 66.9
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 4.9e-64 248.1 162 69.8
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 8.4e-64 247.3 162 68.5
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 8.4e-64 247.3 157 64.3
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 3.2e-63 245.4 162 68.5
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 4.2e-63 245.0 157 64.3
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 9.3e-63 243.8 162 62.3
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 6.0e-62 241.1 157 63.1
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 7.9e-62 240.7 162 62.3
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 7.9e-62 240.7 157 64.3
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 3.9e-61 238.4 157 63.1
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 6.7e-61 237.7 157 63.7
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 8.7e-61 237.3 157 63.1
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.5e-60 236.5 163 65.6
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 2.5e-60 235.7 157 61.8
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 2.5e-60 235.7 157 61.8
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 3.3e-60 235.3 157 61.8
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 4.3e-60 235.0 164 66.5
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 3.7e-59 231.9 157 61.1
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.1e-58 230.3 152 67.8
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.1e-58 230.3 157 61.1
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 5.3e-58 228.0 149 67.8
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.5e-49 199.9 137 61.3
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 5.8e-49 198.0 133 62.4
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 8.4e-48 194.1 161 54.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 7.1e-47 191.0 160 52.5
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 2.7e-46 189.1 164 50.0
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 7.9e-46 187.6 160 52.5
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.9e-44 183.0 117 67.5
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 7.4e-44 181.0 115 70.4
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.3e-43 180.3 115 70.4
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.9e-42 174.5 110 71.8
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.5e-41 173.3 107 72.0
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.0e-41 172.9 148 56.8
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 9.3e-39 164.1 105 70.5
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 8.8e-37 157.5 124 61.3
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 6.3e-35 151.4 88 72.7
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 9.1e-34 147.5 79 79.7
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 1.5e-33 146.7 105 62.9
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 1.7e-32 143.3 157 38.2
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 3.8e-32 142.1 161 50.9
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 4.2e-31 138.7 102 64.7
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.5e-31 138.3 161 49.1
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 7.9e-30 134.4 100 64.0
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.1e-22 109.8 133 46.6
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.6e-22 109.0 132 46.2
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.6e-20 102.8 76 57.9
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 3.3e-20 102.4 85 55.3
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.2e-15 85.9 85 51.8
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.2e-15 85.5 71 63.4
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.0e-13 80.9 67 53.7


User provided reference genes

Program Settings