Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 5.6e-189 664.1 326 100.0
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.5e-149 533.1 331 77.3
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.3e-148 530.0 331 76.7
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.5e-146 523.1 323 79.6
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.1e-144 516.9 331 76.7
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.4e-139 500.0 319 76.2
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 4.1e-139 498.4 356 70.2
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 3.3e-133 478.8 287 76.7
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.3e-133 478.8 302 74.5
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 5.7e-133 478.0 291 77.3
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 9.7e-133 477.2 328 69.5
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.7e-132 476.5 289 75.8
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 4.8e-132 474.9 287 76.0
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.1e-131 473.8 291 76.3
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.1e-131 473.8 291 75.9
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.8e-131 473.0 330 70.3
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 4.1e-131 471.9 325 72.0
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 4.1e-131 471.9 329 70.2
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 9.1e-131 470.7 328 70.4
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.6e-130 469.9 323 70.9
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 4.5e-130 468.4 287 75.6
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.8e-129 465.3 320 70.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 6.5e-129 464.5 323 71.2
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 3.2e-128 462.2 324 71.0
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 4.2e-128 461.8 336 65.2
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 4.2e-128 461.8 314 70.7
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.6e-127 459.9 260 80.8
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.1e-127 459.5 310 70.6
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.7e-127 459.1 300 73.0
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 2.7e-127 459.1 321 69.2
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 4.7e-127 458.4 328 68.0
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 6.1e-127 458.0 329 67.8
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.8e-126 456.4 295 73.6
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 2.3e-126 456.1 323 69.7
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 2.3e-126 456.1 314 69.7
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 5.2e-126 454.9 324 69.4
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.7e-124 449.9 327 66.7
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.8e-124 449.1 315 67.6
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 8.3e-124 447.6 323 66.6
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 1.1e-123 447.2 325 68.6
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.1e-123 447.2 323 67.2
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 4.1e-123 445.3 331 67.4
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 7.0e-123 444.5 325 66.8
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.0e-122 443.0 296 69.3
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 2.0e-122 443.0 295 69.5
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 8.0e-119 431.0 284 72.2
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.0e-118 430.6 295 66.8
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 4.0e-118 428.7 249 78.7
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 5.2e-118 428.3 255 77.6
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.3e-116 423.7 284 70.4
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.3e-116 423.7 320 64.7
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 4.1e-115 418.7 285 69.1
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 1.2e-114 417.2 289 67.5
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.0e-113 414.1 281 69.8
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 1.0e-113 414.1 281 69.4
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.7e-113 413.3 281 65.1
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 2.9e-113 412.5 307 66.1
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 8.6e-113 411.0 256 73.8
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.1e-112 410.6 326 59.5
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.5e-112 410.2 321 60.4
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.9e-112 409.8 223 83.0
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 2.5e-112 409.5 322 58.4
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 3.3e-112 409.1 250 76.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 4.3e-112 408.7 254 76.4
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 6.1e-111 404.8 320 59.1
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 8.0e-111 404.4 281 68.0
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 4.0e-110 402.1 354 60.5
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.2e-109 400.6 322 59.0
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.4e-109 399.1 321 57.9
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 4.4e-109 398.7 322 59.0
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 7.5e-109 397.9 322 57.8
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 2.2e-108 396.4 262 69.1
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 2.2e-108 396.4 322 58.4
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 4.9e-108 395.2 321 57.3
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 3.2e-107 392.5 321 57.6
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 3.2e-107 392.5 322 58.1
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 3.5e-106 389.0 322 56.5
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 6.0e-106 388.3 316 57.3
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.0e-105 387.5 322 56.5
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 2.3e-105 386.3 323 56.3
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 3.3e-104 382.5 254 71.3
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 6.8e-102 374.8 251 68.5
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.2e-101 374.0 286 62.6
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.4e-101 372.1 286 60.5
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.7e-100 370.2 323 60.1
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.4e-100 368.2 320 59.7
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 4.6e-98 362.1 302 57.0
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 5.0e-97 358.6 296 58.1
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 1.4e-94 350.5 167 98.8
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.8e-94 350.1 250 68.8
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.5e-93 344.7 286 58.4
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 8.3e-92 341.3 319 56.4
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.1e-91 340.9 323 51.4
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.4e-91 340.5 328 53.7
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.4e-91 339.7 190 79.5
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 2.5e-88 329.7 223 70.4
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.6e-87 325.9 196 74.0
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.2e-85 320.9 285 58.6
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 1.2e-82 310.8 279 50.5
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 6.0e-82 308.5 278 50.7
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 8.7e-81 304.7 216 66.7
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.1e-80 304.3 191 69.6
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.3e-80 302.4 330 51.2
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 3.4e-77 292.7 316 45.3
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 4.9e-76 288.9 278 49.3
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 1.7e-68 263.8 154 77.3
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.8e-68 262.7 153 76.5
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.6e-66 255.8 180 66.7
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 9.6e-64 248.1 245 55.5
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.4e-62 244.2 245 54.3
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 4.0e-62 242.7 271 49.4
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.5e-61 240.7 166 72.3
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 2.1e-58 230.3 152 67.8
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.4e-54 217.6 140 74.3
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.1e-46 189.9 232 47.8
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.6e-45 186.8 195 51.8
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 2.9e-44 183.3 117 67.5
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 5.5e-43 179.1 127 63.0
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 3.0e-41 173.3 316 36.1
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 3.9e-41 172.9 148 56.8
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 5.7e-40 169.1 216 34.7
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.8e-38 164.1 127 62.2
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 3.1e-38 163.3 142 64.8
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 2.2e-36 157.1 128 61.7
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 8.8e-33 145.2 79 78.5
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.2e-31 140.6 102 65.7
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 4.1e-30 136.3 100 65.0
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.4e-27 127.9 110 69.1
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.1e-24 118.2 217 41.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 8.2e-23 112.1 67 79.1
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.9e-20 103.6 76 57.9
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.3e-15 88.2 85 52.9
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.8e-14 84.3 83 56.6
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 1.4e-06 58.2 42 73.8


User provided reference genes

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