Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 5.3e-109 397.9 228 100.0
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 7.9e-97 357.5 228 84.2
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.3e-96 356.7 228 89.9
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.6e-94 349.7 228 89.0
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.1e-93 347.1 228 88.6
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.1e-93 345.5 228 88.2
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.1e-93 345.5 229 80.8
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 5.3e-93 344.7 228 87.3
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.0e-92 342.8 228 87.7
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 4.5e-92 341.7 227 84.6
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 7.6e-92 340.9 229 85.6
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.0e-91 340.5 229 83.8
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.7e-91 339.7 210 94.8
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.9e-91 339.0 228 86.4
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.8e-91 338.6 229 83.8
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 4.9e-91 338.2 226 83.6
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.2e-89 333.6 228 78.1
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 1.2e-89 333.6 227 83.3
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.2e-89 333.6 229 82.1
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 4.6e-89 331.6 228 80.3
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 6.0e-89 331.3 228 77.6
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 6.0e-89 331.3 227 81.5
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.3e-88 330.1 228 82.9
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.8e-88 329.7 228 83.3
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 2.3e-88 329.3 228 83.3
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 5.1e-88 328.2 228 84.6
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 8.7e-88 327.4 225 81.8
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.1e-87 327.0 229 78.2
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.9e-87 326.2 228 82.0
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 3.3e-87 325.5 229 82.5
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 4.3e-87 325.1 228 82.9
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 4.3e-87 325.1 228 82.5
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 5.7e-87 324.7 228 83.3
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 7.4e-87 324.3 227 80.2
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 7.4e-87 324.3 228 82.9
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 9.6e-87 323.9 228 82.5
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.3e-86 323.6 228 75.0
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 2.1e-86 322.8 228 82.0
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 3.7e-86 322.0 228 82.5
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 3.7e-86 322.0 227 80.2
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 4.8e-86 321.6 228 82.0
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 6.2e-86 321.2 227 80.2
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 8.2e-86 320.9 228 80.3
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.1e-85 320.5 228 81.6
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.1e-85 320.5 228 79.8
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 1.1e-85 320.5 228 79.8
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.4e-85 320.1 228 75.0
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.4e-85 320.1 232 74.6
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.8e-85 319.7 228 75.0
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.8e-85 319.7 229 73.4
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.1e-85 318.9 228 79.8
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 4.0e-85 318.5 228 73.7
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 4.0e-85 318.5 228 82.0
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 9.0e-85 317.4 225 74.2
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.2e-84 317.0 228 82.0
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 1.2e-84 317.0 224 82.6
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.5e-84 316.6 228 78.9
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.5e-84 316.6 227 79.7
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.5e-84 316.6 228 73.7
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.0e-84 316.2 228 78.9
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 2.6e-84 315.8 233 73.8
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.6e-84 315.8 229 78.2
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 3.4e-84 315.5 228 73.7
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 3.4e-84 315.5 234 73.1
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 4.5e-84 315.1 228 73.7
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 5.8e-84 314.7 227 75.8
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 7.6e-84 314.3 228 80.7
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.0e-83 313.9 229 79.0
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.0e-83 313.9 227 79.3
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 2.2e-83 312.8 228 79.4
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 2.2e-83 312.8 228 79.4
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 2.2e-83 312.8 192 84.9
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 2.9e-83 312.4 195 81.5
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 4.9e-83 311.6 228 78.5
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.9e-83 311.6 228 80.3
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 6.5e-83 311.2 228 80.7
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 8.4e-83 310.8 228 80.7
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.1e-82 310.5 228 78.9
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.5e-82 309.3 227 78.0
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 5.5e-82 308.1 185 87.6
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 5.5e-82 308.1 182 88.5
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 5.5e-82 308.1 228 71.9
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 7.1e-82 307.8 229 76.0
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.0e-80 303.9 229 72.5
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.0e-80 303.9 229 72.5
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.0e-80 303.9 229 76.9
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.8e-80 303.1 229 72.1
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 3.9e-80 302.0 228 78.1
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.9e-80 302.0 229 72.1
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.9e-80 302.0 192 81.8
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 6.7e-80 301.2 190 83.7
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 8.7e-80 300.8 228 70.2
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 3.3e-79 298.9 226 77.4
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.3e-79 298.9 229 71.6
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 9.7e-79 297.4 185 84.3
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 9.7e-79 297.4 195 80.5
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.8e-78 295.8 228 70.6
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.7e-78 295.4 228 69.7
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 4.8e-78 295.0 229 76.0
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.8e-77 293.1 228 69.3
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 6.9e-77 291.2 195 79.0
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 9.0e-77 290.8 229 74.2
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 2.0e-76 289.7 194 76.3
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.0e-76 289.7 225 68.4
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.6e-76 289.3 195 77.9
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 4.5e-76 288.5 226 68.1
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.7e-76 287.7 182 83.5
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.3e-75 287.0 225 68.4
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.8e-75 285.4 230 72.6
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 6.5e-75 284.6 225 68.0
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 6.5e-75 284.6 191 77.0
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.1e-74 283.9 225 66.7
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 3.2e-74 282.3 195 75.9
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 1.2e-73 280.4 228 74.1
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.6e-73 280.0 226 66.8
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 6.1e-73 278.1 195 74.4
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.4e-72 276.9 178 78.7
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.5e-71 273.5 227 64.3
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 2.0e-71 273.1 191 72.8
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 2.0e-71 273.1 191 72.8
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 9.7e-71 270.8 191 72.3
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 9.7e-71 270.8 191 72.3
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 6.9e-69 264.6 227 62.1
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 3.4e-68 262.3 169 81.1
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.1e-63 247.3 195 66.7
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 2.2e-59 233.0 191 67.0
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 2.8e-54 216.1 142 76.8
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 3.1e-53 212.6 229 55.0
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.6e-52 210.3 195 62.1
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 3.8e-51 205.7 170 67.1
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 6.1e-41 171.8 119 73.9
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.4e-37 160.6 176 50.6
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 3.1e-37 159.5 195 52.3
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 1.7e-35 153.7 97 75.3
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 3.8e-35 152.5 173 49.7
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 4.1e-29 132.5 130 57.7
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 9.2e-29 131.3 188 41.5
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 3.5e-28 129.4 91 68.1
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.6e-25 119.4 91 84.6
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 6.1e-25 118.6 86 66.3
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 4.7e-17 92.4 90 60.0
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 6.2e-17 92.0 183 32.2
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.1e-10 71.2 41 85.4
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 7.3e-10 68.6 189 29.1
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 3.4e-07 59.7 79 49.4
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.9e-06 56.6 62 54.8


User provided reference genes

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